RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1482
(627 letters)
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat,
guanine nucleotide exchange factor, disease mutation,
leukodystrophy; 2.00A {Homo sapiens}
Length = 182
Score = 147 bits (373), Expect = 1e-41
Identities = 60/178 (33%), Positives = 101/178 (56%), Gaps = 9/178 (5%)
Query: 459 TPPMDDTSLFYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAIL-- 516
MDD +F EV+ +L RG EE + CDNL LEINS +YAYN+++KEV + +L
Sbjct: 5 HHHMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEF 64
Query: 517 -VVKNKPDMDMKSFHTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFAEENESLSVVA 575
+ + +D + ++ + + P+F+NYIK + + L A E+F E+E+L +
Sbjct: 65 PLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISM 124
Query: 576 GKLLHKLYDKDILSEDIVTKWFNKLEPSS------LRKSVEPFVKWLLEADEESEEDD 627
K+L Y +IL+ + + WF++ + + + ++ F++WL EA+EES EDD
Sbjct: 125 AKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSEDD 182
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat,
AA motif; 2.30A {Saccharomyces cerevisiae} SCOP:
a.118.1.14
Length = 189
Score = 138 bits (350), Expect = 3e-38
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 443 SDSESENDVDSVDGQGTPPMDDTSLFYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNV 502
S + D + +D + + F E + ++ R E D LE+N+ R + NV
Sbjct: 2 SVNSIYTDREEIDSE-----FEDEDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNV 56
Query: 503 TVKEVNFYMVKAIL-VVKNKPDMDMKSFHTHMMSKINYFLPLFKNYIKNESAQQDCLDAF 561
T EV + A+L V + ++ N + LFK +E D ++
Sbjct: 57 TYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKRQAFDEEEYIDLMNII 116
Query: 562 EEF--AEENESLSVVAGKLLHKLYDKDILSEDIVTKWFNKLEP----SSLRKSVEPFVKW 615
E + + ++ L LYD DI+ ED++ KW++ + ++K +V+W
Sbjct: 117 MEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEW 176
Query: 616 LLEADEESEEDD 627
L ADEES ++
Sbjct: 177 LQNADEESSSEE 188
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat
motif; 1.50A {Saccharomyces cerevisiae}
Length = 177
Score = 85.5 bits (211), Expect = 1e-19
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 529 FHTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEF-AEENESLSVVAGKLLHKLYDKDI 587
F ++++I F + +++ + E F E++ L + K+L +LY+ DI
Sbjct: 61 FDEDIVNEIAEHNAFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDI 120
Query: 588 LSEDIVTKWFNKLEPSS--------LRKSVEPFVKWLLEADEESEEDD 627
+SE+ + ++ K +R++ +PF+ WL A+ + +E+D
Sbjct: 121 ISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDDDEED 168
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding,
phosphorylation, protein biosynthesis, translation
inititation; 1.8A {Homo sapiens}
Length = 208
Score = 74.4 bits (182), Expect = 2e-15
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 538 NYFLPLFKNYIKNESAQQDCLDAFEEF-AEENESLSVVAGKLLHKLYDKDILSEDIVTKW 596
Y + N+ AQ+ L E A L +L ++YD D+L E+++ W
Sbjct: 64 KYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISW 123
Query: 597 FNKLEPSS--------LRKSVEPFVKWLLEADEESEEDD 627
K +R EPF+KWL EA+EES +
Sbjct: 124 SEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSGGE 162
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat
domain, structural genomics, PSI, protein structure
initiative; 1.90A {Homo sapiens}
Length = 168
Score = 72.4 bits (177), Expect = 5e-15
Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 9/146 (6%)
Query: 483 KLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVKNKPDMDMKSFHTHMMSK---INY 539
K + DN++ +++ + N+ + Y+ + ++ D + + +
Sbjct: 23 KWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS 82
Query: 540 FLPLFKNYIK-NESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWFN 598
F P+ + ++ + Q L A + + + + YD +I+ E+ W
Sbjct: 83 FKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKE 142
Query: 599 KLEPSS-----LRKSVEPFVKWLLEA 619
+ V ++ WL A
Sbjct: 143 DITQEFPGKGKALFQVNQWLTWLETA 168
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 76.1 bits (188), Expect = 6e-15
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRL 350
+ N ++ + +K +V+I E + I T + IG+ IG N L
Sbjct: 218 VNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYL 277
Query: 351 -EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG------NKTCLS 403
+ L + KI + EV+ SV+ + + S + ++ V G N
Sbjct: 278 RPYTILVEKNKIGASVEVKESVIMEGSKIPHLSY-VGDSVIAEDVNFGAGTLIANLRFDE 336
Query: 404 GVKLPSAGADEVDDGNN 420
+ + G
Sbjct: 337 KEVKVNVKGKRISSGRR 353
Score = 37.6 bits (88), Expect = 0.011
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGS 346
++ + + + K IG G N + IG I
Sbjct: 332 LRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYP 385
Score = 32.9 bits (76), Expect = 0.30
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIV 66
+P+++K L+EY +E+L GI +I V
Sbjct: 25 FVPILSKPLIEYQIEYLRKCGIRDITV 51
>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO;
1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB:
3fsb_A* 3fsc_A*
Length = 273
Score = 66.3 bits (162), Expect = 4e-12
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 296 YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH-------CIIGRNCTIGSNV 348
+ + I ++IG+ ++++ + VI + IG+N Q H IG N IG+
Sbjct: 60 FYNDRINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLS 119
Query: 349 RLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
++ +V I + + N VGE S + + L V++ N
Sbjct: 120 DIQH-----HVYIGNYVNI-----HSNVFVGEKSIIKDFVWLFPHVVLTN 159
Score = 65.9 bits (161), Expect = 4e-12
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 309 IGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
I K++++K+ V+IGE +I +N + CII N I + + +
Sbjct: 5 ISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIG-----ARSILGEYLVD 59
Query: 368 RLSV---LSYNTGVGEHSKLLNGCLLGTGVLIGNKT 400
+ + +GE++ + ++ +IG+
Sbjct: 60 FYNDRINKKHPLIIGENALIRTENVIYGDTIIGDNF 95
Score = 65.1 bits (159), Expect = 7e-12
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 11/117 (9%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRL---EKSY 354
+ + E V+IG+ ++ V I G I +N + IG +G + ++
Sbjct: 7 KSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRIN 66
Query: 355 LFDNVKIEDNCEVRLSVLSY-------NTGVGEHSKLLNGCLLGTGVLIGNKTCLSG 404
+ I +N +R + Y N G + +G V IG + +
Sbjct: 67 KKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQH 123
Score = 49.7 bits (119), Expect = 1e-06
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 1/100 (1%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH-CIIGRNCTIGSNVRLEKSYLFD 357
+ + + E+ IG + I IG + +G I V L +
Sbjct: 99 HKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLT 158
Query: 358 NVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
N + E+ + + S +L G + L+G
Sbjct: 159 NDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVG 198
Score = 41.3 bits (97), Expect = 5e-04
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 11/95 (11%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
+ V IG + V +GE S I + + + + N S
Sbjct: 117 TLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDF-----VWLFPHVVLT-NDPTPPSNELLG 170
Query: 359 VKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTG 393
V IE V++ + V + L+G G
Sbjct: 171 VTIELFA-----VIAARSVVLPGIHINEDALVGAG 200
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal
region, MA2 domain, W2 domain, EIF4G2, EIF family
translation; HET: MES PG4; 2.00A {Homo sapiens}
Length = 364
Score = 65.0 bits (157), Expect = 2e-11
Identities = 20/147 (13%), Positives = 50/147 (34%), Gaps = 9/147 (6%)
Query: 482 EKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVKNKPDMDMKSFHTHM---MSKIN 538
K + DN++ +++ + N+ + Y+ + ++ D + +
Sbjct: 218 YKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLL 277
Query: 539 YFLPLFKNYI-KNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWF 597
F P+ + ++ + Q L A + + + + YD +I+ E+ W
Sbjct: 278 SFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWK 337
Query: 598 NKLEPSSL-----RKSVEPFVKWLLEA 619
+ V ++ WL A
Sbjct: 338 EDITQEFPGKGKALFQVNQWLTWLETA 364
>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix,
acetyl transferase, transferase; HET: ACO U5P UDP PE4;
1.43A {Bordetella petrii} PDB: 3mqh_A*
Length = 192
Score = 59.6 bits (144), Expect = 2e-10
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEK-SYLFDNV 359
+ E IG S + V I G+ IGE L + +G IG+ V+++ ++DNV
Sbjct: 11 IVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNV 70
Query: 360 KIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGV-----LIGNKTCLSGVKL 407
+ED+ S++ N + T V L N T + G +
Sbjct: 71 FLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATI 123
Score = 47.3 bits (112), Expect = 3e-06
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 322 GEGSSIGENTQLSHCIIGRNCTIGSNVRLEK-SYLFDNVKIEDNCEV-RLSVLSYNTGVG 379
G ++I I+ IG++ R+ ++ +I + C + + + +G
Sbjct: 1 GHMATIHPT-----AIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIG 55
Query: 380 EHSKLLNGCLLGTGVLIGNKT 400
K+ N + V + +
Sbjct: 56 NRVKIQNNVSVYDNVFLEDDV 76
Score = 45.4 bits (107), Expect = 1e-05
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDN 358
+++ IG+ L Q V +G IG ++ ++ + N + +V S +F N
Sbjct: 27 WVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTN 86
Query: 359 VKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
V R S T V + + L C + G IG
Sbjct: 87 VYNPRAAIERKSEYRD-TIVRQGATLGANCTVVCGATIGR 125
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 60.0 bits (146), Expect = 9e-10
Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 282 IVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGR 340
++ ++ P + + +I ++ V+ + + +G + S +IG
Sbjct: 112 CLELFITPVDSGFPGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGA 171
Query: 341 NCTIGSNVRLEKSYLFDNVKIEDNCEV 367
T+G + SY+ V I + +
Sbjct: 172 YSTVGEH-----SYIHPRVVIRERVSI 193
Score = 58.1 bits (141), Expect = 3e-09
Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 31/134 (23%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-------SHCIIGRNCTIGSNVRL-- 350
+ + +G + VIG S++GE++ + IG+ I +
Sbjct: 148 YAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGS 207
Query: 351 -------------EKSYLFDNVKIEDNCEV-------RLSVLSYNTGVGEHSKLLNGCLL 390
+ V IED+ E+ R ++ V E SK+ N +
Sbjct: 208 CGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRF--KHSVVREGSKIDNLVQI 265
Query: 391 GTGVLIGNKTCLSG 404
V +G + +
Sbjct: 266 AHQVEVGQHSMIVA 279
Score = 35.3 bits (82), Expect = 0.047
Identities = 9/89 (10%), Positives = 23/89 (25%), Gaps = 34/89 (38%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVG 379
VI + I ++ I + + + G
Sbjct: 132 VIHPTAIIEDH-----VCIEPYAVVCQHAHV----------------------------G 158
Query: 380 EHSKLLNGCLLGTGVLIGNKTCL-SGVKL 407
+ +G ++G +G + + V +
Sbjct: 159 SACHIGSGSVIGAYSTVGEHSYIHPRVVI 187
Score = 29.9 bits (68), Expect = 2.3
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
N + +A V +G+ S++ Q I GS IG + IG + +
Sbjct: 261 NLVQIAHQVEVGQHSMIVAQAGIA-GS----------TKIGNHVIIGGQAGIT-----GH 304
Query: 359 VKIEDNCEV 367
+ I D+ +
Sbjct: 305 ICIADHVIM 313
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 59.6 bits (145), Expect = 1e-09
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 30/133 (22%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-------SHCIIGRNCTIGSNVRL-- 350
+ IG + VIG S IGE L IG +I S +
Sbjct: 143 YAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGG 202
Query: 351 ------------EKSYLFDNVKIEDNCEV-------RLSVLSYNTGVGEHSKLLNGCLLG 391
+K V I D+ E+ R ++ +T +G KL N ++
Sbjct: 203 EGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGAL--SDTLIGNGVKLDNQIMIA 260
Query: 392 TGVLIGNKTCLSG 404
V IG+ T ++
Sbjct: 261 HNVQIGDHTAMAA 273
Score = 58.8 bits (143), Expect = 2e-09
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 20/115 (17%)
Query: 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVK 360
+A D + ++ + VI G+ IG + +HC+IG IG +L V
Sbjct: 127 IVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEG-----GWLAPRVT 181
Query: 361 IEDNCEVRLSVL------------SYNTGVGEHSKL--LNGCLLGTGVLIGNKTC 401
+ + + V + G K+ + G +G V IG T
Sbjct: 182 LYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTT 236
Score = 52.3 bits (126), Expect = 3e-07
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 309 IGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
I T+++ + +S+G + S IG +IG++ + I +
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHC-----VIGARSVIGEGG-- 174
Query: 368 RLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
L+ + + + +G +IG
Sbjct: 175 ---WLAPRVTLYHDVTIGARVSIQSGAVIG 201
Score = 35.3 bits (82), Expect = 0.047
Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 44/143 (30%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGE------------GSSIGEN--------------TQL 333
+ + +IG+ L +V + G+ IG Q+
Sbjct: 161 HCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQI 220
Query: 334 SHCIIGRNCTIGSNV-----RLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGC 388
IG + IG+N L + + + VK+ DN ++++N +G+H+ + C
Sbjct: 221 GGVTIGDDVEIGANTTIDRGALSDTLIGNGVKL-DN----QIMIAHNVQIGDHT-AMAAC 274
Query: 389 L-------LGTGVLIGNKTCLSG 404
+ +G ++ L G
Sbjct: 275 VGISGSAKIGRHCMLAGGVGLVG 297
Score = 31.8 bits (73), Expect = 0.63
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
N I +A +V IG + + V I GS IGR+C + V L +
Sbjct: 255 NQIMIAHNVQIGDHTAMAACVGIS-GS----------AKIGRHCMLAGGVGLV-----GH 298
Query: 359 VKIEDNCEV 367
++I DN V
Sbjct: 299 IEICDNVFV 307
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 59.1 bits (144), Expect = 1e-09
Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 30/133 (22%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-------SHCIIGRNCTIGSNVRL-- 350
N + V +G ++ +G+ S IG ++L IG+NC I S +
Sbjct: 121 NAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGA 180
Query: 351 ------------EKSYLFDNVKIEDNCEV-------RLSVLSYNTGVGEHSKLLNGCLLG 391
K V I D E+ R ++ +T +G + N C +
Sbjct: 181 DGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGAL--DDTIIGNGVIIDNQCQIA 238
Query: 392 TGVLIGNKTCLSG 404
V+IG+ T ++G
Sbjct: 239 HNVVIGDNTAVAG 251
Score = 58.8 bits (143), Expect = 2e-09
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVK 360
+ +G + VI G +G+N + + C +G+N IG+ S L+ NV
Sbjct: 105 VIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAG-----SRLWANVT 159
Query: 361 IEDNCEV 367
I ++
Sbjct: 160 IYHEIQI 166
Score = 52.2 bits (126), Expect = 2e-07
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 309 IGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
I ++V+ +G SIG N + S +G N IG+ ++ N KI
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGC-----FVGKNSKIGAGS-- 152
Query: 368 RLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
L N + ++ CL+ +G ++G
Sbjct: 153 ---RLWANVTIYHEIQIGQNCLIQSGTVVG 179
Score = 48.4 bits (116), Expect = 4e-06
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
NN+ + + +I L V+IG G +G+N IG + +NV ++
Sbjct: 114 NNVSIGANAVIESGVELGDNVIIGAGCFVGKN-----SKIGAGSRLWANVT-----IYHE 163
Query: 359 VKIEDNCEVRLSV------LSYNTGVGEHSKL--LNGCLLGTGVLIGNKTC 401
++I NC ++ Y G K+ + ++G V IG T
Sbjct: 164 IQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTT 214
Score = 30.6 bits (70), Expect = 1.4
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
N +A +V+IG + + V++ GS IGR C IG + +
Sbjct: 233 NQCQIAHNVVIGDNTAVAGGVIMA-GS----------LKIGRYCMIGGASVIN-----GH 276
Query: 359 VKIEDNCEV 367
++I D V
Sbjct: 277 MEICDKVTV 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 2e-09
Identities = 76/463 (16%), Positives = 129/463 (27%), Gaps = 146/463 (31%)
Query: 226 PLFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQR 285
F DNFD + + K +L EE +D I I S+D V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEE----------IDHI-------------IMSKDAVSG 63
Query: 286 -----WVHPFVPSYKYRRNNIY--LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCII 338
W ++ + E+VL L + +
Sbjct: 64 TLRLFWT------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-- 115
Query: 339 GRNCTIGSNVRLEKSYLFDNV-KIEDNCEVR--LSVLSYNTGVGEHSKLLNGCLLGTGVL 395
R+ N K NV +++ ++R L L V L++G +LG+G
Sbjct: 116 -RDRLYNDNQVFAK----YNVSRLQPYLKLRQALLELRPAKNV-----LIDG-VLGSG-- 162
Query: 396 IGNKTCLSGVKLPSAGADEVDD--------GNNDSDEEEVPKFKCESEQELDSDESDSES 447
KT ++ S D N +S E + E Q+L
Sbjct: 163 ---KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-----EMLQKLLYQID---- 210
Query: 448 ENDVDSVDGQGTPPMDDTSLFYTEVVDSLL--RGYEEKL-----VCDNLTLEINSSRYAY 500
N D + S+ + LL + YE L V + A+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLNVQNAKAWN------AF 262
Query: 501 NVTVKEVNFYMVKAILVV-KNKPDMD----MKSFHTHMMSKINYFLP-----LFKNYIKN 550
N++ K IL+ + K D + H + P L Y+
Sbjct: 263 NLSCK---------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 551 ESAQQDCLDAFEEFAEENESLS--VVA--GKLLH---------KLYDKDILSEDIVTKWF 597
++ E + + ++ + + K + D L+ I+
Sbjct: 314 R---------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSL 363
Query: 598 NKLEPSSLRKSVEPF------VK---------WLLEADEESEE 625
N LEP+ RK + W +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics,
national institute allergy and infectious diseases; HET:
GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A
1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Length = 459
Score = 57.1 bits (139), Expect = 8e-09
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
+ L ++ G+ + V+I EG H I+G IG+ L+ + D+
Sbjct: 261 SRFDLRGELTHGRDITIDTNVII-EG----------HVILGDRVRIGTGCVLKNCVIGDD 309
Query: 359 VKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
+I + + L N VG ++L G L G +GN
Sbjct: 310 SEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGN 349
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 53.4 bits (129), Expect = 1e-07
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNT--G 377
VIGEG I +N ++ H ++G I +E S L E + + +L + G
Sbjct: 332 VIGEGCVI-KNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIG 390
Query: 378 VGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSAGADEVDDGNNDSD 423
+G++ + ++ IG+ VK+ D V + ++D
Sbjct: 391 IGKNCHIKR-AIIDKNARIGD-----NVKI--INKDNVQEAARETD 428
Score = 40.3 bits (95), Expect = 0.002
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 18/66 (27%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSS------------------IGENTQLSHCIIGRNCTI 344
+ I + ++++ +++G IG+N + II +N I
Sbjct: 349 VGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI 408
Query: 345 GSNVRL 350
G NV++
Sbjct: 409 GDNVKI 414
>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein,
N-glycan biosynthesis, bacillosamine, structural
genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni}
SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A*
2npo_A
Length = 194
Score = 51.1 bits (123), Expect = 1e-07
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 19/112 (16%)
Query: 287 VHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH-CIIGRNCTIG 345
+H + + +LI V+ + I +G + ++ + H C+IG +
Sbjct: 78 IHKS--ALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVS 135
Query: 346 SNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
+ NVKI NC +G +S +L L ++G
Sbjct: 136 VGAK-----CAGNVKIGKNCF-----------LGINSCVLPNLSLADDSILG 171
Score = 33.8 bits (78), Expect = 0.097
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 299 NNIYLAEDVLIGKTS------VLKQQVVIGEGSSIGENTQLSHCI-IGRNCTIGSN 347
+ + + +IG+ S V IG+ +G N+ + + + + +G
Sbjct: 118 TSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGG 173
Score = 28.4 bits (64), Expect = 4.8
Identities = 10/90 (11%), Positives = 22/90 (24%), Gaps = 32/90 (35%)
Query: 319 VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGV 378
+I + + EN + +I I + + +
Sbjct: 82 ALISPSAIVEEN---AGILIMPYVVINAKAK----------------------------I 110
Query: 379 GEHSKLLNGCLLGTGVLIG-NKTCLSGVKL 407
+ L ++ +IG G K
Sbjct: 111 EKGVILNTSSVIEHECVIGEFSHVSVGAKC 140
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Length = 456
Score = 52.9 bits (128), Expect = 2e-07
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 23/106 (21%)
Query: 299 NNIYLAEDVLIGK------TSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEK 352
L + GK +++ V +G+ IG L + +IG + I LE
Sbjct: 258 ARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLED 317
Query: 353 SYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
S + + +G S+L G L +GN
Sbjct: 318 S------IVGEKAA-----------IGPFSRLRPGAELAAETHVGN 346
>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}
Length = 496
Score = 52.7 bits (126), Expect = 2e-07
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 305 EDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIED 363
+ + + + G+S+ + +IG N + L+ +++ ++
Sbjct: 260 DFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQE 319
Query: 364 NCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSG 404
NC + S L N H + LG + G + L G
Sbjct: 320 NCYIINSRLERNCVTA-HGGKIINAHLGDMIFTGFNSFLQG 359
Score = 45.0 bits (106), Expect = 5e-05
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 21/98 (21%)
Query: 286 WVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVV----------------IGEGSSIGE 329
V + + + + E+VL+ + + L + +
Sbjct: 281 SVSGYA----VIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAH 336
Query: 330 NTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
++ + +G G N L+ S +KI D C V
Sbjct: 337 GGKIINAHLGDMIFTGFNSFLQGSES-SPLKIGDGCVV 373
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
pyrophosphorylase, allostery, kinetics,
structure-function relationships; 2.10A {Agrobacterium
tumefaciens}
Length = 420
Score = 52.2 bits (126), Expect = 2e-07
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVG 379
V+ I L+ ++ S RLE + + +VKI + ++ V+ + +
Sbjct: 326 VVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIP 384
Query: 380 EH 381
E
Sbjct: 385 EG 386
Score = 50.3 bits (121), Expect = 1e-06
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 324 GSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSK 383
++ +C I S L +S LF V+ + +V+ + +G H++
Sbjct: 313 HDDEDRRGSAVSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQ 371
Query: 384 LLNGCLLGTGVLIGNKTCLSGVKLPSAGADEVDDGN 419
L N ++ GV+I G+ + G D D
Sbjct: 372 LSN-VVIDHGVVIPE-----GLIV---GEDPELDAK 398
Score = 46.4 bits (111), Expect = 2e-05
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL 350
L V S L+ V+ IG + QLS+ +I I + +
Sbjct: 343 LFTGVRANSYSRLEN-AVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIV 389
Score = 43.7 bits (104), Expect = 1e-04
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
++ G ++L + ++ + IG + +L + V I + V
Sbjct: 342 LLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIV 389
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat
repeat, translation; 2.24A {Homo sapiens} SCOP:
a.118.1.14 a.118.1.14
Length = 339
Score = 51.8 bits (123), Expect = 3e-07
Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 8/133 (6%)
Query: 470 TEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVKNKPDMDMKSF 529
++ L G + V D + ++ + N V+ + + + ++ + +D+
Sbjct: 213 RQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPLRVDVAVL 272
Query: 530 HTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILS 589
L + Y+ +E + L A + E + LYD+D++
Sbjct: 273 KARA--------KLLQKYLCDEQKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVK 324
Query: 590 EDIVTKWFNKLEP 602
ED W + +P
Sbjct: 325 EDAFYSWESSKDP 337
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta
helix; HET: U20; 1.74A {Escherichia coli K12} SCOP:
b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Length = 262
Score = 50.3 bits (121), Expect = 6e-07
Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 42/134 (31%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL------------ 350
+ + IG ++ V IGEG+ + SH ++ + IG + +
Sbjct: 20 IGANAHIGPFCIVGPHVEIGEGTVLK-----SHVVVNGHTKIGRDNEIYQFASIGEVNQD 74
Query: 351 -----EKSYLFDNVKIEDNCEVRLSVLSYNTG---------VGEHSKLLNG------CLL 390
E + + +I D +R SV + + G VG + L+ C +
Sbjct: 75 LKYAGEPTRV----EIGDRNRIRESV-TIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTV 129
Query: 391 GTGVLIGNKTCLSG 404
G ++ N L+G
Sbjct: 130 GNRCILANNATLAG 143
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
ssgcid, beta helix, structural genomics, seattle
structural center for infectious disease, transferase;
1.80A {Burkholderia thailandensis}
Length = 283
Score = 50.0 bits (120), Expect = 7e-07
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 42/134 (31%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL------------ 350
L E V +G +++ V IG ++IG SH +I + TIG + R+
Sbjct: 37 LHETVEVGPYAIVGSNVTIGARTTIG-----SHSVIEGHTTIGEDNRIGHYASVGGRPQD 91
Query: 351 -----EKSYLFDNVKIEDNCEVRLSVLSYNTG---------VGEHSKLLNG------CLL 390
E + L I D +R + +TG +G+ + ++ C +
Sbjct: 92 MKYKDEPTRL----VIGDRNTIREFT-TIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRV 146
Query: 391 GTGVLIGNKTCLSG 404
G+ V++ + ++G
Sbjct: 147 GSHVVLSSNAQMAG 160
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase
binding motif, pyrophosphorylase; HET: GTP; 2.80A
{Methanocaldococcus jannaschii}
Length = 196
Score = 49.0 bits (117), Expect = 9e-07
Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 10/138 (7%)
Query: 33 PVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLIT 92
V +P L+ L +CL++Y + L S + I + + + + +E + K I
Sbjct: 16 GVEKP--LIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYKDYKN--IV 71
Query: 93 LIVSDGCYSFGDVMRDLDGKAVIRNDFILVSGDV--VSNINLLSALKSFKKINSMDSGAV 150
+I + G D+ + F++VS D+ + + + S + F I +
Sbjct: 72 VIDTSGKGYIEDLNECIG---YFSEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVE 128
Query: 151 ALVLYKKKGQSKSSWKED 168
AL + K + + D
Sbjct: 129 ALAVMIPKEK-YPNPSID 145
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
UDP-N-acetylglucosamine acyltransferase, LPXA,
LEFT-handed B structure; HET: SOG TLA; 2.10A
{Helicobacter pylori} SCOP: b.81.1.1
Length = 270
Score = 49.6 bits (119), Expect = 1e-06
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 42/134 (31%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL------------ 350
+ + V IG+ V+ V + EG + ++ + + +G N +
Sbjct: 16 INKGVEIGEFCVIGDGVKLDEGVKLH-----NNVTLQGHTFVGKNTEIFPFAVLGTQPQD 70
Query: 351 -----EKSYLFDNVKIEDNCEVRLSVLSYNTG---------VGEHSKLLNG------CLL 390
E S L I ++ +R N G +G+ + L+ C++
Sbjct: 71 LKYKGEYSEL----IIGEDNLIREFC-MINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVI 125
Query: 391 GTGVLIGNKTCLSG 404
G+ ++ N L+G
Sbjct: 126 GSHCILANGVTLAG 139
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 50.3 bits (121), Expect = 1e-06
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 24/106 (22%)
Query: 299 NNIYLAEDVLIGK------TSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEK 352
++ DV IG+ + L + IG +G +T L + +G + +
Sbjct: 276 ATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTL------TDVAVGDGASVVR 329
Query: 353 SYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
++ + I D VG + L G LG +G
Sbjct: 330 THG-SSSSIGDGAA-----------VGPFTYLRPGTALGADGKLGA 363
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe;
acetyltransferase, bifunctional, drug design; HET: ACO
UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4
c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A*
1g95_A*
Length = 468
Score = 49.8 bits (120), Expect = 2e-06
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 24/106 (22%)
Query: 299 NNIYLAEDVLIGK------TSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEK 352
Y+ DV I +LK Q IG + + T + + TIG+ +
Sbjct: 267 EATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYV------VDSTIGAGAVITN 320
Query: 353 SYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
S + + + D VG ++ + LG V IGN
Sbjct: 321 SMI-EESSVADGVT-----------VGPYAHIRPNSSLGAQVHIGN 354
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 48.5 bits (116), Expect = 2e-06
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 308 LIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCE 366
I ++V+ V +GEG ++ + + IG I + ++ + ++ C
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVD-----HDCRLGAACH 155
Query: 367 V-RLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKT 400
+ S L+ VGE + L G + GV IG T
Sbjct: 156 LGPASALAGGVSVGERAFLGVGARVIPGVTIGADT 190
Score = 35.0 bits (81), Expect = 0.049
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 299 NNIYLAEDVLIGKTS------VLKQQVVIGEGSSIGENTQLSHCI-IGRNCTIGSN 347
+ D +G L V +GE + +G ++ + IG + +G+
Sbjct: 140 TGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAG 195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 3e-06
Identities = 95/619 (15%), Positives = 169/619 (27%), Gaps = 241/619 (38%)
Query: 84 KSLV---GTL-ITLIVSDGCYSFGDVMRDLDGKAVIRNDFI---------LVSGD-VVSN 129
+ L G+L L+V + +++ F + D +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQE---------QFNKILPEPTEGFAADDEPTTP 57
Query: 130 INLLSALKSF--KKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYECDSKKLL----MH 183
L+ + + G VL + +E L +H
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVL------------NLCLTEFENC---YLEGNDIH 102
Query: 184 ----QTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLF----SDNFDF- 234
+ Q+N + E I Y + + LF N
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRP---FDKKSNSALFRAVGEGNAQLV 157
Query: 235 -----Q--TQEHFIKGVLINEEILDCRLYC---SVVDDI---------EYGISVKDWPSY 275
Q T ++F EE+ D LY +V D+ E + D
Sbjct: 158 AIFGGQGNTDDYF-------EELRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 276 QIASRDIVQRWV-HP-FVPSYKYRRNNIYLAED----VLIGKTSVLKQQVVIGEGSSIGE 329
+I++ W+ +P P YL LIG +
Sbjct: 209 FTQGLNILE-WLENPSNTPD------KDYLLSIPISCPLIG----V-------------- 243
Query: 330 NTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCL 389
QL+H Y+ V +L + G E L G
Sbjct: 244 -IQLAH------------------YV-----------VTAKLLGFTPG--ELRSYLKGAT 271
Query: 390 LGTGVLIGNKTCLSGVKLPSAGA-DEVDDGNNDSDEEEVPK-----FK--CESEQELDSD 441
G+ +A A E D +S V K F E +
Sbjct: 272 ----------GHSQGL--VTAVAIAETDSW--ESFFVSVRKAITVLFFIGVRC-YEAYPN 316
Query: 442 ESDSESENDVDSVD-GQGTP-PM---DDTSLFYTEVVDSLLRGYEEKLVCDN---LTLEI 493
S S + DS++ +G P PM + + E V + L ++L +
Sbjct: 317 TSLPPSILE-DSLENNEGVPSPMLSISNLTQ---EQVQDYVNKTNSHLPAGKQVEISL-V 371
Query: 494 NSSR-----------YAYNVTVKEVNFYMVKA--------ILVVKNKPDMDMK----S-- 528
N ++ Y N+T+++ KA I + K + +
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKA-----KAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 529 FHTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFA-----------EENESLSVVAGK 577
FH+H++ ++ +D + F + L V++G
Sbjct: 427 FHSHLLVPA------------SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 578 LLHKLYDKDILSEDIVTKW 596
+ ++ D I+ + KW
Sbjct: 475 ISERIVD-CIIRLPV--KW 490
Score = 45.8 bits (108), Expect = 5e-05
Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 39/156 (25%)
Query: 4 KKGKAKSEIQKDEVL--QAVIVTDTFNRNFFPVPEPY---CLLPLVNKCLLEYTLEHLHL 58
+K KA S + + + + + F+ F PV P+ L+P + + ++
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLK---FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 59 SGIE-EIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCY-------------SFGD 104
+ + +I V+ T + +R L S+ ++ I+ FG
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVL----SGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 105 ---------VMRDLDGKAVIRNDFILVSGDVVSNIN 131
R+ DG V R ++V+G + N +
Sbjct: 507 GGASGLGVLTHRNKDGTGV-R---VIVAGTLDINPD 538
Score = 44.3 bits (104), Expect = 1e-04
Identities = 36/242 (14%), Positives = 67/242 (27%), Gaps = 75/242 (30%)
Query: 407 LPSAGADEVDDGNNDSDEEEVPKFKCESEQELDSDESDSESENDVDSVDGQGTPPMDDTS 466
LP D + E V KF ++ +
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ--------------------- 79
Query: 467 LFYTEVVDSLLRGYEEKLVCDN----LTLEINSSRYAYNVTVKEV--NFYMVKAILVVKN 520
+ +V++ L +E + N L ++ V KE+ N+ A ++ K
Sbjct: 80 --FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI--TARIMAKR 135
Query: 521 KPDMDMKSFHTHMMSKINYFLPLFKNYIKNESA--------QQDCLDAFEEFAEENESLS 572
D S LF+ + +A Q + D FEE +
Sbjct: 136 PFDKKSNS-------------ALFRA-VGEGNAQLVAIFGGQGNTDDYFEELRD------ 175
Query: 573 VVAGKLLHKLYDKDILSEDIVTKWFNKLEP-SSLRKSVEPF-------VKWLLEADEESE 624
L++ Y ++ D++ L E ++WL +
Sbjct: 176 ------LYQTY-HVLV-GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 625 ED 626
+D
Sbjct: 228 KD 229
Score = 42.3 bits (99), Expect = 6e-04
Identities = 76/477 (15%), Positives = 133/477 (27%), Gaps = 164/477 (34%)
Query: 13 QKDEVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHV 72
Q D+VL + F + + + L L + + T +
Sbjct: 79 QFDQVLNLCL--TEFENCYLEGNDIHALA--------------AKLLQENDTTLVKTKEL 122
Query: 73 NQI----RELVKRKEKSLVGTLITLIVSDG---CYS-FG---------DVMRDL--DGKA 113
+ R + KR + + V +G + FG + +RDL
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 114 VIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAY 173
++ D I S + +S L+ +K ++ + G + W E+
Sbjct: 183 LVG-DLIKFSAETLSE--LIRTTLDAEK------------VFTQ-GLNILEWLENP---- 222
Query: 174 ECDSKKLLMHQTPQDN---QKKVNIPMENILLYSKLEICAHLAST--------------- 215
TP + ++ P+ I + AH T
Sbjct: 223 ---------SNTPDKDYLLSIPISCPL--IGVIQ----LAHYVVTAKLLGFTPGELRSYL 267
Query: 216 -GIMICSPAVPP--LFS-----DNFDFQTQEH----FIKGVLINEEILDCRLYCSVVDD- 262
G S + + ++F ++ F GV E + L S+++D
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 263 IEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIG 322
+E V PS ++ ++ Q V +V + N +L +QV I
Sbjct: 328 LENNEGV---PSPMLSISNLTQEQVQDYV-----NKTNSHLPAG----------KQVEIS 369
Query: 323 EGSSIGENTQLSHCIIGRNCTI---------GSNVRLEKSYLFDNVKIE---DNCEVRLS 370
L + G + G N+ L K K D + S
Sbjct: 370 ----------L---VNGAKNLVVSGPPQSLYGLNLTLRK------AKAPSGLDQSRIPFS 410
Query: 371 ----VLSYN---TGVGEHSKLLNGC-------LLGTGVLIGNKTCLSGVKLPSAGAD 413
S HS LL L+ V K V G+D
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Score = 32.7 bits (74), Expect = 0.47
Identities = 48/361 (13%), Positives = 91/361 (25%), Gaps = 169/361 (46%)
Query: 50 EYTLEHLHLSGIEEI---------IVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCY 100
+ + S I +I I F +IRE +I + DG
Sbjct: 1651 NHFKDTYGFS-ILDIVINNPVNLTIHFGGEKGKRIRENY--------SAMIFETIVDGKL 1701
Query: 101 SFGDVMRDLDGK-------------------------------AVIRNDFILVSGDVV-- 127
+ ++++ +++ ++ +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 128 -SNINLL---SALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYECDSKKLLMH 183
S L +AL S + S++S V +V +G +
Sbjct: 1762 HS----LGEYAALASLADVMSIES-LVEVV--FYRG-------------------MTMQV 1795
Query: 184 QTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKG 243
P+D + N M A +P
Sbjct: 1796 AVPRDELGRSNYGM-----------IA---------INPGRV-----------------A 1818
Query: 244 VLINEEILDCRLYCSVVDDI--EYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNI 301
++E L VV+ + G V +I N
Sbjct: 1819 ASFSQEALQ-----YVVERVGKRTGWLV------EIV---------------------N- 1845
Query: 302 YLAEDVLIGKTSVLKQQVVI-GEGSSIGENTQ-LSHCIIGRNCTIGSNVRLEKSYLFDNV 359
Y E+ QQ V G+ ++ T L+ + + I + L+KS + V
Sbjct: 1846 YNVEN----------QQYVAAGDLRALDTVTNVLNFIKL-QKIDI---IELQKSLSLEEV 1891
Query: 360 K 360
+
Sbjct: 1892 E 1892
Score = 28.5 bits (63), Expect = 8.4
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 596 WFNKLEPSSLRKSVEPFVKWLLEADEESEEDD 627
+F S L+ E F K L E E DD
Sbjct: 27 FFIA---SQLQ---EQFNKILPEPTEGFAADD 52
>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar,
LEFT-handed beta helix, sugar N-AC transferase; HET: COA
0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A*
3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*
Length = 205
Score = 47.0 bits (112), Expect = 4e-06
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 296 YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHC----IIGRNCTIGSNVRLE 351
Y I + +V I +L +V IG S I T L + I S +
Sbjct: 48 YNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVY 107
Query: 352 KSYLFDNVKIEDNCEVRLSVLSYNTG---------VGEHSKLLNGCLLGTGVLIG 397
+ + + + TG +G HS + ++G GV +G
Sbjct: 108 AAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVG 162
Score = 42.8 bits (101), Expect = 1e-04
Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 321 IGEGSSIGENTQLSHCIIGRNCTIGSNVRLEK-SYLFDNVKIEDNCEV--RLSVLSYNTG 377
+G+ I + + + +IG+NVR++ L V I + ++ G
Sbjct: 35 VGKNVLISKKASIYNP---GVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVG 91
Query: 378 V--GEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408
+ + + + + ++ + + L G +P
Sbjct: 92 IEMYDFANISSRTIVYAAIDDFSGNALMGPTIP 124
Score = 41.2 bits (97), Expect = 3e-04
Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 16/117 (13%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNV 359
+IY + IG + ++ +IG I + ++D
Sbjct: 46 SIYNPGVISIGNNVRIDDFCILSGKVTIGSY-----SHIAAYTALYGGE--VGIEMYDFA 98
Query: 360 KIEDNCEVRLSVLSYNTGV--------GEHSKLLNGCLLGTGVLIG-NKTCLSGVKL 407
I V ++ ++ + +L V+IG + V +
Sbjct: 99 NISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVI 155
Score = 35.8 bits (83), Expect = 0.021
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 277 IASRDIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGEN-TQLSH 335
I+SR IV + F N + + +V +V++ + IG + +
Sbjct: 100 ISSRTIVYAAIDDF-------SGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN 152
Query: 336 CIIGRNCTIGSN 347
+IG +G+
Sbjct: 153 VVIGEGVAVGAM 164
>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase;
structural genomics, csgid; 1.70A {Bacillus anthracis}
PDB: 3cj8_A*
Length = 240
Score = 47.1 bits (112), Expect = 5e-06
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 286 WVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIG 345
+ P R+++ + ++ +I + + VIGEGS I + ++G T+G
Sbjct: 93 RIEPGA----IIRDHVEIGDNAVIMMNATINIGAVIGEGSMID-----MNAVLGGRATVG 143
Query: 346 SNVRLEKSYLFDNVK---------IEDNC 365
N + + V +ED+
Sbjct: 144 KNCHVGAGAVLAGVIEPPSAKPVIVEDDV 172
Score = 36.0 bits (83), Expect = 0.022
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 21/102 (20%)
Query: 297 RRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLF 356
I + S + + G + I II + IG
Sbjct: 64 NSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPG-----AIIRDHVEIG----------- 107
Query: 357 DNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
DN I N + +GE S + +LG +G
Sbjct: 108 DNAVIMMNATIN-----IGAVIGEGSMIDMNAVLGGRATVGK 144
Score = 28.7 bits (64), Expect = 5.5
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 357 DNVKIEDNCEVRLSV-LSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402
+IE +R V + N + ++ + G ++G G +I L
Sbjct: 90 IKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVL 136
Score = 28.7 bits (64), Expect = 5.8
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 319 VVIGEGSSIGEN-TQLSHCIIGRNCTIGSNVRLEKS 353
V++ + IG N L +G+ + + + +
Sbjct: 166 VIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED 201
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
structural genomics; 2.30A {Campylobacter jejuni subsp}
Length = 266
Score = 47.2 bits (113), Expect = 7e-06
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 43/135 (31%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL------------ 350
L +DV+I + + + IG I I + TIG + R+
Sbjct: 19 LGDDVVIEAYAYVSKDAKIGNNVVIK-----QGARILSDTTIGDHSRVFSYAIVGDIPQD 73
Query: 351 ------EKSYLFDNVKIEDNCEVRLSVLSYNTG---------VGEHSKLLNG------CL 389
+KS + I N +R + N+G +G+++ ++ CL
Sbjct: 74 ISYKEEQKSGV----VIGKNATIREFA-TINSGTAKGDGFTRIGDNAFIMAYCHIAHDCL 128
Query: 390 LGTGVLIGNKTCLSG 404
LG +++ N L+G
Sbjct: 129 LGNNIILANNATLAG 143
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
O-acyltransferase; L.interrogans LPXA, LPXA, LPXA
acyltransferase; 2.10A {Leptospira interrogans} PDB:
3i3a_A* 3i3x_A*
Length = 259
Score = 46.8 bits (112), Expect = 8e-06
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 34/130 (26%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL-----------E 351
L E V +G S+++ V I EG+ I H I IG R +
Sbjct: 15 LHESVEVGPYSIIEGNVSIQEGTIIE-----GHVKICAGSEIGKFNRFHQGAVIGVMPQD 69
Query: 352 KSY---LFDNVKIEDNCEVRLSVLSYNTG--------VGEHSKLLNG------CLLGTGV 394
+ L I D+ R + + G +G + + C+LG
Sbjct: 70 LGFNQQLLTKTVIGDHNIFREYS-NIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNN 128
Query: 395 LIGNKTCLSG 404
++ + L+G
Sbjct: 129 ILTHGAVLAG 138
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure,
CTP:phosphocholine cytidylyltransferase; 1.50A
{Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Length = 254
Score = 45.9 bits (109), Expect = 2e-05
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH-VNQIRELVKR--------KEKSLV 87
P L+ + K L+EY +E L GI +II+ + Q L ++ + +
Sbjct: 47 PKALVQVNQKPLIEYQIEFLKEKGINDIII-IVGYLKEQFDYLKEKYGVRLVFNDKYADY 105
Query: 88 GTLITLIVSDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALK 137
+L + K + N +++ + + + + L
Sbjct: 106 NNFYSLYL---------------VKEELANSYVIDADNYLFKNMFRNDLT 140
>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics,
protein structure initiative, medwest C structural
genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5
PDB: 3vnp_A 2eg0_A
Length = 173
Score = 43.8 bits (104), Expect = 4e-05
Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 43/130 (33%)
Query: 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSS---------------IGENT--Q---L 333
Y Y+ +A I + V +GE SS IG+ Q
Sbjct: 6 YPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCT 65
Query: 334 SHC------IIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNG 387
H I+ + T+G V L I+ + L +G S +L+G
Sbjct: 66 LHQSPQYPLILEDDVTVGHQVILHSC------HIKKDA---L--------IGMGSIILDG 108
Query: 388 CLLGTGVLIG 397
+G G IG
Sbjct: 109 AEIGEGAFIG 118
Score = 29.5 bits (67), Expect = 2.1
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 305 EDVLIGKTSVL-----KQQVVIGEGSSIGENTQLSHCIIGRNCTIGSN 347
+DV +G +L K+ +IG GS I L IG IG+
Sbjct: 78 DDVTVGHQVILHSCHIKKDALIGMGSII-----LDGAEIGEGAFIGAG 120
>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.38A {Salmonella paratyphi} PDB:
2f9c_A
Length = 334
Score = 44.5 bits (104), Expect = 6e-05
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 319 VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE-----------KSYLFDNVKIEDNCEV 367
I + N ++H I + +E + ++ + ++ E
Sbjct: 163 SRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEE 222
Query: 368 -RLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSG 404
+ L Y++ V EH+ + C+L VL+G + G
Sbjct: 223 DAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRG 260
Score = 33.7 bits (76), Expect = 0.16
Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH------CIIGRNCTIGSNVRLEK 352
N I + + Q + IG+N + I N TI S+ E+
Sbjct: 64 ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREE 123
Query: 353 SYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
++ + ++ + E+ + ++ + + ++
Sbjct: 124 CAIYGDARVLNQSEILAIQ-GLTHEHAQILQIYDRATVNHSRIVHQ 168
>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase,
structural genomics, riken S genomics/proteomics
initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii}
SCOP: b.81.1.5 PDB: 1v67_A 2fko_A
Length = 173
Score = 43.0 bits (102), Expect = 7e-05
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 43/130 (33%)
Query: 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSS---------------IGENTQLS---- 334
Y+ + + + +V+ VV+ E +S +G+ + +
Sbjct: 4 YEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVS 63
Query: 335 -H------CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNG 387
H IG TIG N + + K+ + + +G S +L+G
Sbjct: 64 IHTSHGYPTEIGEYVTIGHNAMVHGA------KVGNYV---I--------IGISSVILDG 106
Query: 388 CLLGTGVLIG 397
+G V+IG
Sbjct: 107 AKIGDHVIIG 116
Score = 28.0 bits (63), Expect = 6.9
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 305 EDVLIGKTSVL-----KQQVVIGEGSSIGENTQLSHCIIGRNCTIGSN 347
E V IG +++ V+IG S I L IG + IG+
Sbjct: 76 EYVTIGHNAMVHGAKVGNYVIIGISSVI-----LDGAKIGDHVIIGAG 118
>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle
structural genomics center for infect disease,
GRAM-negative bacteria; 1.61A {Anaplasma
phagocytophilum}
Length = 191
Score = 41.9 bits (99), Expect = 2e-04
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 44/131 (33%)
Query: 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSS---------------IGENT--Q---L 333
Y + + I + + V IG+ +S +GE T Q +
Sbjct: 27 VPYAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTV 86
Query: 334 SHC-------IIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLN 386
H +IG+ TIG + L + +N V G+G S +++
Sbjct: 87 VHTDSMHGDTVIGKFVTIGHSCILHAC------TLGNNAFV---------GMG--SIVMD 129
Query: 387 GCLLGTGVLIG 397
++ G ++
Sbjct: 130 RAVMEEGSMLA 140
Score = 28.0 bits (63), Expect = 6.7
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 10/48 (20%)
Query: 305 EDVLIGKTSVL-----KQQVVIGEGSSIGENTQLSHCIIGRNCTIGSN 347
+ V IG + +L +G GS + + ++ + +
Sbjct: 100 KFVTIGHSCILHACTLGNNAFVGMGSIV-----MDRAVMEEGSMLAAG 142
>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta
helix, gamma carbonic anhydrase, disulfide dependent
activity; 1.10A {Thermosynechococcus elongatus} PDB:
3kwe_A 3kwc_A
Length = 213
Score = 40.5 bits (95), Expect = 7e-04
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 32/130 (24%)
Query: 300 NIYLAEDVLIGKTSVLK----QQVVIGEGSSIGENTQLSHC----------------IIG 339
++ + + V I + ++ IG ++I + + H IG
Sbjct: 57 DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVI-HGLQQGRVIGDDGQEYSVWIG 115
Query: 340 RNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNK 399
N +I + I D C + +N VG GC++ VLI +
Sbjct: 116 DNVSITHMALIHGP-----AYIGDGCFIGFRSTVFNARVGA------GCVVMMHVLIQDV 164
Query: 400 TCLSGVKLPS 409
G +PS
Sbjct: 165 EIPPGKYVPS 174
>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}
Length = 189
Score = 39.6 bits (93), Expect = 0.001
Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 50/149 (33%)
Query: 282 IVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSS--------------- 326
+ + Y+ + L E V + ++SV+ V +G+ S
Sbjct: 1 MSDQSGKLLTSVRTYQGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIR 60
Query: 327 IGENT--Q---LSHC-------------IIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR 368
IG T Q + H IIG + TIG L I +
Sbjct: 61 IGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGC------TIGNRV--- 111
Query: 369 LSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
L +G S +++G ++ V++
Sbjct: 112 L--------IGMKSMIMDGAIVEDEVIVA 132
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein;
LEFT-handed parallel beta helix, lipid A biosynthesis,
lipid synthesis; 2.10A {Arabidopsis thaliana}
Length = 305
Score = 40.1 bits (94), Expect = 0.001
Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 56/152 (36%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN---- 358
+ + V +G + V +G G + + N +G + L + +
Sbjct: 22 IGKGVSVGPYCTIGSSVKLGNGCKLY-----PSSHVFGNTELGESCVLMTGAVVGDELPG 76
Query: 359 --------------------------------VKIEDNCEVRLSVLSYNTG--------V 378
+ I +N E+R S + +
Sbjct: 77 YTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFC-SIHRSSKPSDKTVI 135
Query: 379 GEHSKLLNG------CLLGTGVLIGNKTCLSG 404
G+++ ++ C +G + N T L+G
Sbjct: 136 GDNNLIMGSCHIAHDCKIGDRNIFANNTLLAG 167
Score = 36.3 bits (84), Expect = 0.022
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 307 VLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEK-SYLFDNVKIEDNC 365
VLI ++V+ VIG+G S+G +C IG + +G+ +L S++F N ++ ++C
Sbjct: 8 VLIHPSAVVHPNAVIGKGVSVG-----PYCTIGSSVKLGNGCKLYPSSHVFGNTELGESC 62
Query: 366 EVRLSVLSYNTGVGEHSKLLN 386
+ + + G N
Sbjct: 63 VLMTGAVVGDELPGYTFIGCN 83
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol,
DI-MYO-inositol phosphate; 1.89A {Archaeoglobus
fulgidus} PDB: 2xmh_A*
Length = 232
Score = 39.1 bits (92), Expect = 0.002
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 33 PVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLIT 92
VP+P L+ + ++ T++ L + E I+ + + + I +K K +
Sbjct: 34 GVPKP--LVRVGGCEIILRTMKLLS-PHVSEFIIVASRYADDIDAFLKDKGFN-----YK 85
Query: 93 LIVSDGCYSFGDVM---RDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSM 145
++ D + L K + + FIL GD V + + + + +
Sbjct: 86 IVRHDR----PEKGNGYSLLVAKNHVEDRFILTMGDHVYSQQFIEKAVRGEGVIAD 137
>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center
for structural genomics O infectious diseases, all beta
protein; 1.20A {Salmonella enterica subsp}
Length = 187
Score = 38.0 bits (89), Expect = 0.003
Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 50/137 (36%)
Query: 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSS---------------IGENT--Q---L 333
Y+ + + V+I +SV+ V + + IG T Q +
Sbjct: 9 RPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSV 68
Query: 334 SHC-------------IIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGE 380
H IIG + T+G V L I + V G+G
Sbjct: 69 LHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGC------TIGNRVLV---------GMG- 112
Query: 381 HSKLLNGCLLGTGVLIG 397
S +L+G ++ V+IG
Sbjct: 113 -SIVLDGAIIEDDVMIG 128
Score = 28.0 bits (63), Expect = 7.2
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 305 EDVLIGKTSVL-----KQQVVIGEGSSIGENTQLSHCIIGRNCTIGSN 347
EDV +G +L +V++G GS + L II + IG+
Sbjct: 88 EDVTVGHKVMLHGCTIGNRVLVGMGSIV-----LDGAIIEDDVMIGAG 130
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics,
NPPSFA, national project O structural and functional
analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Length = 232
Score = 34.4 bits (79), Expect = 0.083
Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 23/117 (19%)
Query: 39 CLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDG 98
L+P + ++E+ LE L+ +G+ + V + L L+ L
Sbjct: 25 ALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPAPALTLPDRGGLLENLEQA----- 79
Query: 99 CYSFGDVMRDLDGKAVIRN-DFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVL 154
+ ++G+ ++ D ++ + V +L ++ V ++
Sbjct: 80 -------LEHVEGRVLVATGDIPHLTEEAVR--FVLDKAP--------EAALVYPIV 119
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A
{Mycobacterium SP}
Length = 199
Score = 33.9 bits (78), Expect = 0.094
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLV 87
LLPL + LL TL +++IV +++ E V+ +V
Sbjct: 25 LLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVELDGLDIV 72
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium
tuberculosis H37RV} PDB: 2we9_A 2yes_A
Length = 197
Score = 33.4 bits (77), Expect = 0.14
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLV 87
LLP + +L TL+ +G +++I+ + +R + +V
Sbjct: 25 LLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMALDGTDVV 72
>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix
domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB:
1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*
Length = 209
Score = 33.3 bits (76), Expect = 0.14
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 25/108 (23%)
Query: 311 KTSVLKQQVVIGEGSSIGENTQLS--------------------HCIIGRNCTIGSNVRL 350
+K + E +GE + IG+ C+IG V +
Sbjct: 16 SVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTI 75
Query: 351 EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
+ D ++ + G +H L+ + +IGN
Sbjct: 76 ---IMNGANHRMDGSTYPFNL--FGNGWEKHMPKLDQLPIKGDTIIGN 118
Score = 31.4 bits (71), Expect = 0.67
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 232 FDFQTQEHFIKGVLINEEILDCRL----YCS----VVDDIEYGISVKDWPSYQIASRDIV 283
+D + E F K +L + IL+ +L +CS V + D +Y
Sbjct: 38 YDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNG 97
Query: 284 QRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIG 328
P + + + + DV IGK V+ V IG+G+ +
Sbjct: 98 WEKHMPKLDQLPIKGD-TIIGNDVWIGKDVVIMPGVKIGDGAIVA 141
Score = 29.1 bits (65), Expect = 3.9
Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVR-- 349
SY +N + +L +L ++ IG+ SIG + + G N + +
Sbjct: 35 YSYYDSKNGETFDKQILYHYP-ILNDKLKIGKFCSIGPGVTI--IMNGANHRMDGSTYPF 91
Query: 350 -LEKSYLFDNVKIEDNCEVRLSV-LSYNTGVGEHSKLLNGCLLGTGVLIG 397
L + ++ D ++ + + +G+ ++ G +G G ++
Sbjct: 92 NLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVA 141
>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H
domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium
tuberculosis} PDB: 3fsx_A*
Length = 332
Score = 33.5 bits (76), Expect = 0.18
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 316 KQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKS 353
+ IG+ +G N+ L +G +C + + + +
Sbjct: 231 THVISIGKRCLLGANSGLG-ISLGDDCVVEAGLYVTAG 267
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina
thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A
1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A
Length = 247
Score = 32.5 bits (74), Expect = 0.32
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQL----SHCI-IGRNCTIGSNVRL-EKSYLF 356
+ I + + +V IG + + I +G + V L +
Sbjct: 62 IDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETIN 121
Query: 357 DNVKIEDNCEVRLSVLSYNTGVGE-----HSKLLNG-CLLGTGVLIG 397
+ + ++ V + Y +G H ++G +G IG
Sbjct: 122 EEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIG 168
>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate
succinyltransferase; structural genomics, joint center
for structural genomics; HET: MSE CIT; 1.90A
{Campylobacter jejuni}
Length = 387
Score = 32.0 bits (72), Expect = 0.68
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 309 IGKTSVLKQQVVIGEGSSIG---ENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNC 365
I ++++ + +G G+SI T + +G+ C +G+N + + DNC
Sbjct: 261 ISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSVT-------GIPLGDNC 313
Query: 366 EV 367
V
Sbjct: 314 IV 315
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase,
MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis}
PDB: 2xwm_A*
Length = 223
Score = 31.3 bits (72), Expect = 0.74
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 40 LLPLVNKCLLEYTLEHLHLSG-IEEIIVFC-TSHVNQIRELVKRKEKSLV 87
+ L LLE+ L L SG I+ I++ + ++ + + ++ +V
Sbjct: 24 FVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGGEDSVIV 73
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.74
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 601 EPSSLRKSVEPFVKWLLEADEESEED 626
EP S+RK E K L E D S+
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVM 108
Score = 29.7 bits (66), Expect = 1.9
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 18/75 (24%)
Query: 410 AGADEVDDGNNDSDEEEVPKFKCESEQELDSDESDSESENDVDSVDGQGTPPMDDTSLFY 469
A AD + + E + K++ E + L E D+ S+ + +++ +
Sbjct: 75 AQADRLT-----QEPESIRKWREEQRKRL--QELDAASKVMEQEWREKAKKDLEE---WN 124
Query: 470 TEVVDSLLRGYEEKL 484
+ E++
Sbjct: 125 --------QRQSEQV 131
>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic
resistance, center for struc genomics of infectious
diseases (csgid); 2.70A {Staphylococcus aureus}
Length = 219
Score = 31.1 bits (70), Expect = 0.91
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL--SHCIIGRNCTIGSNVRL 350
E++L+G+ S + + + ++ IIGR C+IG
Sbjct: 27 KPTITNENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTF 80
Score = 30.3 bits (68), Expect = 1.6
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
NI + + + + E +GE S+ R + V + D
Sbjct: 12 ENILPIKG---NRNLQFIKPTITNENILVGEY---SYYDSKRGESFEDQVLYHYEVIGDK 65
Query: 359 VKIEDNC 365
+ I C
Sbjct: 66 LIIGRFC 72
Score = 29.1 bits (65), Expect = 3.7
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 271 DWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGEN 330
D +Y + P + +I + DV IG+ + V IG+G+ I
Sbjct: 90 DGSTYPFHLFRMGWEKYMP-SLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAE 148
Query: 331 T 331
Sbjct: 149 A 149
Score = 28.0 bits (62), Expect = 9.2
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 293 SYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEK 352
SY Y ED ++ V+ +++IG SIG T + G N + +
Sbjct: 41 SY-YDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFI--MNGANHRMDGSTYPFH 97
Query: 353 SYLFDNVKIEDNCEVRLSVLSYNTG----VGEHSKLLNGCLLGTGVLIG 397
+ K + + G +G ++ G +G G +I
Sbjct: 98 LFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIA 146
>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas
aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A
Length = 347
Score = 31.3 bits (70), Expect = 0.92
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 299 NNIYLAEDVLIGKTSVL--KQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKS 353
L T + +GEG IG N + +G + + + +
Sbjct: 235 KGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGIG-IPLGDRNIVEAGLYITAG 290
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2; structural genomics, PSI-2, protein structure
initiative; 2.30A {Listeria monocytogenes str}
Length = 246
Score = 30.6 bits (70), Expect = 1.1
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 40 LLPLVNKCLLEYTLEHLHLS-GIEEIIVFCT-SHVNQIRELVKRKEKSLVGTLIT 92
LPL K ++ +T+E L+ ++I++ +N + +K+ +I
Sbjct: 26 FLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIE 80
>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix;
3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB:
2xat_A*
Length = 212
Score = 30.3 bits (68), Expect = 1.3
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 285 RWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENT 331
+ + + +V IG ++ V +G G+ IG
Sbjct: 95 EPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRA 141
Score = 30.3 bits (68), Expect = 1.3
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 20/83 (24%)
Query: 335 HCIIGRNCTIGSNVRLEKS------------YLFDNVKIEDNCEVRLSVLSYNTGV---- 378
+IG C+IGS + + F + E ++
Sbjct: 56 KLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGH 115
Query: 379 ----GEHSKLLNGCLLGTGVLIG 397
G + + G +G G +IG
Sbjct: 116 EVWIGTEAMFMPGVRVGHGAIIG 138
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 30.7 bits (69), Expect = 1.3
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 217 IMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQ 276
I I S P + F F+ ++ I+ L I + + D Y W
Sbjct: 39 INIGSCFNTPNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEPLADYFYQEQK--WQDE- 95
Query: 277 IASRDIVQRWVHPFVPSY 294
+++ V+ +
Sbjct: 96 ------LRKNVYKHAKNN 107
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 31.1 bits (70), Expect = 1.4
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 410 AGADEVDDGNNDSD-EEEVPKFKCESEQELDSDESDSESENDVDSVDGQGTPPMDDTS 466
G D + E Q +SD + ++ SVD GT ++
Sbjct: 416 QMVPLDPKGTTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYVNTDR 473
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, P protein structure initiative;
2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 30.5 bits (69), Expect = 1.5
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 319 VVIGEGSSI-GENTQLSHCIIGRNCTIGSNVRLEKS 353
V++ ++I G T IG+ T+G N+ + ++
Sbjct: 258 VIVYSNATILGRVT------IGKGATVGGNIWVTEN 287
Score = 29.7 bits (67), Expect = 2.7
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 22/85 (25%)
Query: 319 VVIGEGSSIGENTQLSHCIIGRNCTIG--SNVRLEKSYLFDNVK----IEDNCEVRLSVL 372
VVIG S IG N +L + T+G S + +ED+ V+
Sbjct: 211 VVIGATSIIGNNVKLYQGV-----TLGAKSFPLDNNGNPIKGIPRHPILEDD------VI 259
Query: 373 SYNTGVGEHSKLLNGCLLGTGVLIG 397
V ++ +L +G G +G
Sbjct: 260 -----VYSNATILGRVTIGKGATVG 279
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A
{Streptococcus pneumoniae} PDB: 2vsi_A*
Length = 236
Score = 30.2 bits (69), Expect = 1.6
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 40 LLPLVNKCLLEYTLEHLHLS-GIEEIIVFCT-SHVNQIRELVKR 81
L L ++ +L +T+E L IE+I+V V+ +LV +
Sbjct: 25 FLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK 68
>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-
succinyltransferase; ssgcid, beta helix,
acyltransferase, amino-acid biosynthesis, cytoplasm;
1.87A {Brucella suis}
Length = 304
Score = 30.5 bits (68), Expect = 1.6
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 19/105 (18%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE---KSYL 355
++ + K +++ +G + IG+N + V + +
Sbjct: 151 MPSFVNLGAYVDKGAMIDTWATVGSCA-----------QIGKNVHLSGGVGIGGVLEPMQ 199
Query: 356 FDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKT 400
IEDNC + + V E + G +LG GV IG T
Sbjct: 200 AGPTIIEDNC-----FIGARSEVVEGCIVREGSVLGMGVFIGKST 239
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics,
center for STR genomics of infectious diseases, csgid;
2.61A {Vibrio cholerae o1 biovar el tor}
Length = 212
Score = 29.9 bits (67), Expect = 2.0
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 17/57 (29%)
Query: 311 KTSVLKQQVVIGEGSSIG---------ENTQLSHC--------IIGRNCTIGSNVRL 350
V +++G+ S + + H +IG C+IGS
Sbjct: 17 DQQVTNPNIIVGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAVF 73
Score = 28.7 bits (64), Expect = 5.1
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 271 DWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGEN 330
DW S R + + DV IG +++ V IG G+ I
Sbjct: 84 DWIS--TFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASR 141
Query: 331 T 331
+
Sbjct: 142 S 142
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix,
OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Length = 313
Score = 30.1 bits (68), Expect = 2.1
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 319 VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKS 353
V IG G+ + L + I+G + IG+N +++
Sbjct: 230 VTIGTGAKV-----LGNIIVGSHVRIGANCWIDRD 259
Score = 29.0 bits (65), Expect = 5.2
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 33/90 (36%)
Query: 319 VVIGEGSSIGENTQLSHCIIGRNCTI-------GSNVRLEKSYLFDNVK----IEDNCEV 367
VVIGE IIG C I + + E + K + D
Sbjct: 184 VVIGET-----------AIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDY--- 229
Query: 368 RLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
V +G +K+L ++G+ V IG
Sbjct: 230 ---VT-----IGTGAKVLGNIIVGSHVRIG 251
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314,
rhodococcus RHA1, structural genomics, PSI-2; HET: MSE;
2.05A {Rhodococcus SP}
Length = 209
Score = 29.5 bits (67), Expect = 2.2
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 36 EPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELV 79
P LL + ++ +G + + T++ R V
Sbjct: 104 HPMVLLDAP--PSTNHAMDVCREAGFAPRVAYRTANFETARAFV 145
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural
genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Length = 255
Score = 29.2 bits (64), Expect = 3.2
Identities = 15/110 (13%), Positives = 29/110 (26%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGC 99
+L + L E+++ +F +V V+ K L +
Sbjct: 24 MLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTE 83
Query: 100 YSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGA 149
L + + + V NI+ F I+ G
Sbjct: 84 TRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDISQHSDGY 133
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 29.6 bits (67), Expect = 3.4
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 280 RDIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEG 324
D H +P + E V+ GK + K+ V++
Sbjct: 493 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNAD 537
>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL;
HET: SOP; 1.90A {Neisseria meningitidis serogroup Y}
PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*
Length = 215
Score = 29.0 bits (65), Expect = 3.4
Identities = 11/100 (11%), Positives = 37/100 (37%), Gaps = 21/100 (21%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSS--IGENTQLSHCIIGRNCTIGSNVRLEKSYLF 356
N++Y+ + I +++ + G + I ++ ++ + + ++ + +
Sbjct: 35 NSVYIGNNCKIVSSNIR----LKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGN 90
Query: 357 DNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLI 396
+ I + ++ +G+ C+L G I
Sbjct: 91 GEITIAEKGKIS---------IGKD------CMLAHGYEI 115
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics,
PSI-2, structure initiative; 2.71A {Pseudomonas
aeruginosa PA01}
Length = 306
Score = 29.1 bits (66), Expect = 3.9
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 36 EPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELV 79
EP LL + + Y + G+ I F + + +R +V
Sbjct: 194 EPMILLDV--QPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMV 235
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 28.6 bits (65), Expect = 5.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 41 LPLVNKCLLEYTLEHLHLSGIEEII 65
LP+V+K L++Y +E +G E +
Sbjct: 28 LPIVDKPLIQYAVEEAMEAGCEVMA 52
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic;
transferase, non-mevalonate-pathway, herbicide,
allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana}
PDB: 2yc5_A* 1w77_A* 2ycm_A*
Length = 228
Score = 28.2 bits (64), Expect = 6.3
Identities = 6/28 (21%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 40 LLPLVNKCLLEYTLEHLH-LSGIEEIIV 66
+PL+ + + Y+ + ++EI+V
Sbjct: 26 YIPLLGQPIALYSFFTFSRMPEVKEIVV 53
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural
genomics consortium, TBSGC, rossman fold; HET: CDM;
2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A
2xwn_A*
Length = 231
Score = 28.3 bits (64), Expect = 6.3
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 40 LLPLVNKCLLEYTLEHLHLSG-IEEIIV 66
L + L+E ++ L SG ++ ++V
Sbjct: 29 FYQLDGQTLIERAVDGLLDSGVVDTVVV 56
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 28.7 bits (65), Expect = 6.7
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEII 65
LLP+V+ +E G +
Sbjct: 37 LLPVVDTPGIELIAAEAAELGATRLA 62
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 28.6 bits (65), Expect = 6.9
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 41 LPLVNKCLLEYTLEHLHLSGIEEII 65
LP+V++ L++Y ++ +GIE++I
Sbjct: 40 LPVVDRPLIQYAVDEAVEAGIEQMI 64
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 28.2 bits (64), Expect = 8.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 41 LPLVNKCLLEYTLEHLHLSGIEEII 65
LPLV+K L++Y + +GI EI+
Sbjct: 34 LPLVDKPLIQYVVNECIAAGITEIV 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.390
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,435,286
Number of extensions: 571101
Number of successful extensions: 1593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1219
Number of HSP's successfully gapped: 158
Length of query: 627
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 528
Effective length of database: 3,937,614
Effective search space: 2079060192
Effective search space used: 2079060192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)