RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1482
(627 letters)
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b
epsilon {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 161
Score = 135 bits (342), Expect = 7e-38
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 7/160 (4%)
Query: 468 FYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAIL-VVKNKPDMDM 526
F E + ++ R E D LE+N+ R + NVT EV + A+L V +
Sbjct: 2 FEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQT 61
Query: 527 KSFHTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEF--AEENESLSVVAGKLLHKLYD 584
++ N + LFK +E D ++ E + + ++ L LYD
Sbjct: 62 LGPKDAVVKVFNQWGLLFKRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYD 121
Query: 585 KDILSEDIVTKWFNKLEPS----SLRKSVEPFVKWLLEAD 620
DI+ ED++ KW++ + ++K +V+WL AD
Sbjct: 122 NDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEWLQNAD 161
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 71.8 bits (176), Expect = 9e-16
Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 4/131 (3%)
Query: 466 SLFYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVKNKPDMD 525
+L E+ L + +E + I ++ + + ++ A+ +
Sbjct: 1 ALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVC----YSAII 56
Query: 526 MKSFHTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDK 585
++ ++ + L + Y+ +E + L A + E + LYD+
Sbjct: 57 FETPLRVDVAVLKARAKLLQKYLCDEQKELQALYALQALVVTLEQPPNLLRMFFDALYDE 116
Query: 586 DILSEDIVTKW 596
D++ ED W
Sbjct: 117 DVVKEDAFYSW 127
>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 78
Score = 56.8 bits (137), Expect = 4e-11
Identities = 16/70 (22%), Positives = 28/70 (40%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE 351
P+ R + DV I +++ V +G IG + + +IG +C I +E
Sbjct: 6 PARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVE 65
Query: 352 KSYLFDNVKI 361
+ L I
Sbjct: 66 DANLAAACTI 75
Score = 51.0 bits (122), Expect = 5e-09
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 319 VVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTG 377
+ G I N + + +G IG+ ++ S + D+ +I V + L+
Sbjct: 15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACT 74
Query: 378 VG 379
+G
Sbjct: 75 IG 76
Score = 41.4 bits (97), Expect = 1e-05
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 338 IGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKL-----LNGCLLGT 392
GR+ I +NV +E NV + ++ + N+ +G+ ++ + L
Sbjct: 17 HGRDVEIDTNVIIE-----GNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAA 71
Query: 393 GVLIGN 398
IG
Sbjct: 72 ACTIGP 77
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
{Escherichia coli, gene lpxA [TaxId: 562]}
Length = 262
Score = 49.1 bits (116), Expect = 5e-07
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 308 LIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNC 365
+I K++ + ++ EG+SIG N + CI+G + IG L+ +V + +
Sbjct: 1 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK-----SHVVVNGHT 54
Score = 45.6 bits (107), Expect = 7e-06
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 22/121 (18%)
Query: 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNV------------ 348
+ E IG + + ++G IGE T L SH ++ + IG +
Sbjct: 13 IVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVN 72
Query: 349 -RLEKSYLFDNVKIEDNCEVRLSVLS--------YNTGVGEHSKLLNGCLLGTGVLIGNK 399
L+ + V+I D +R SV T VG + L+ + +GN+
Sbjct: 73 QDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNR 132
Query: 400 T 400
Sbjct: 133 C 133
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase
{Helicobacter pylori [TaxId: 210]}
Length = 259
Score = 48.5 bits (114), Expect = 8e-07
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 309 IGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR 368
I KT+++ + I +G IGE C+IG + V+L +NV ++ + V
Sbjct: 3 IAKTAIISPKAEINKGVEIGEF-----CVIGDGVKLDEGVKLH-----NNVTLQGHTFVG 52
Query: 369 LSVLSY-NTGVGEHSKLLNGCLLGTGVLIGNKTC 401
+ + +G + L + ++IG
Sbjct: 53 KNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNL 86
Score = 41.2 bits (95), Expect = 2e-04
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 304 AEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLE-KSYLFDNVKI 361
A+ +I + + + V IGE IG+ +L + N T+ + + + +F +
Sbjct: 4 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 63
Query: 362 EDNCE 366
+
Sbjct: 64 GTQPQ 68
Score = 35.8 bits (81), Expect = 0.010
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTI 344
+ + V IG+ V+ V + EG + ++ + + +
Sbjct: 12 KAEINKGVEIGEFCVIGDGVKLDEGVKLH-----NNVTLQGHTFV 51
Score = 27.7 bits (60), Expect = 4.5
Identities = 5/51 (9%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIG-ENTQLSHCIIGRNCTIGSNV 348
+ + V + + L V + + +G ++G
Sbjct: 23 EFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYK 73
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 292
Score = 46.7 bits (111), Expect = 4e-06
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH-VNQIRELVKRKEKSLVGTLITLIV 95
LLP+ +K ++ Y L L L+GI EI++ T + ++L+ G + V
Sbjct: 23 SKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNW--GLDLQYAV 80
Query: 96 SDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINS 144
+ +++ ++ + L S + +
Sbjct: 81 QPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQT 129
>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella
enterica [TaxId: 28901]}
Length = 320
Score = 44.1 bits (103), Expect = 3e-05
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 310 GKTSVLKQQVVIGEGSSIGENTQLSH-CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR 368
G + + + G+ I N +++ C + N IG NV ++++ + D +I DN ++
Sbjct: 55 GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQ 114
Query: 369 LSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
S + E + + +L ++
Sbjct: 115 SSSV-----REECAIYGDARVLNQSEILAI 139
Score = 38.3 bits (88), Expect = 0.002
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTI------GSNVRLEK 352
N I + + Q + IG+N + I I S+ E+
Sbjct: 62 ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREE 121
Query: 353 SYLFDNVKIEDNCEV 367
++ + ++ + E+
Sbjct: 122 CAIYGDARVLNQSEI 136
Score = 36.7 bits (84), Expect = 0.007
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 309 IGKTSVLKQQ---VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNC 365
+ +VL QQ + E + T+ I N I L++NV+I DN
Sbjct: 45 VDADNVLSQQGDCWIYDENAMAFAGTE-----ITGNARITQP-----CTLYNNVRIGDNV 94
Query: 366 EVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
+ + +S + ++ + + + + G+
Sbjct: 95 WIDRADISDGARISDNVTIQSSSVREECAIYGD 127
Score = 33.7 bits (76), Expect = 0.051
Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS--------HCIIGRNCTIGSNVR 349
L + + ++++ V+ +G + ++ +I + I +
Sbjct: 221 DAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEIL 280
Query: 350 LEKSYLFDNVKIEDNCEV 367
+E V+I V
Sbjct: 281 IE-----RQVEISGRAAV 293
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Length = 291
Score = 43.2 bits (102), Expect = 6e-05
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 7/111 (6%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKRKEKSLVGTLITLIV 95
LLP+ +K ++ Y L L L+GI EI++ T + L+ + G +
Sbjct: 23 SKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSE--FGIQLEYAE 80
Query: 96 SDGCYSFGDVMRDLDGKAVIRND--FILVSGDVVSNINLLSALKSFKKINS 144
+ G+ + + +++ ++ L+
Sbjct: 81 QPSPDGLAQAF--IIGETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTE 129
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 295
Score = 42.6 bits (100), Expect = 7e-05
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKRKEK 84
LLP+ +K ++ Y L L L+GI +I++ T + R+L+ +
Sbjct: 25 SKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQ 73
>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 201
Score = 41.9 bits (97), Expect = 8e-05
Identities = 23/118 (19%), Positives = 41/118 (34%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE 351
P+ R + DV I +++ V +G IG + + +IG +C I +E
Sbjct: 6 PARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVE 65
Query: 352 KSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409
+ L I +R + + LG G G+ T L ++
Sbjct: 66 DANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGD 123
Score = 26.5 bits (57), Expect = 9.4
Identities = 16/142 (11%), Positives = 42/142 (29%), Gaps = 4/142 (2%)
Query: 216 GIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSY 275
+ I + V D + + + + + E
Sbjct: 38 RVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFV 97
Query: 276 QIASRDI---VQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQ 332
++ + + ++ + N A + K + +IG+ +G +TQ
Sbjct: 98 EMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQ 157
Query: 333 LS-HCIIGRNCTIGSNVRLEKS 353
L +G+ TI + + ++
Sbjct: 158 LVAPVTVGKGATIAAGTTVTRN 179
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase
small subunit, catalytic domain {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 307
Score = 42.3 bits (98), Expect = 1e-04
Identities = 36/264 (13%), Positives = 77/264 (29%), Gaps = 13/264 (4%)
Query: 37 PYCLLPLV-NKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIV 95
+PL N L++ + + S I +I V + + + R S +G
Sbjct: 33 AKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 92
Query: 96 SDGCY-----SFGDVMRDLDGKAVIRNDFILVSGD---VVSNINLLSALKSFKKINSMDS 147
+ D + ++ + L + K I +
Sbjct: 93 VEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRE 152
Query: 148 GAVALVLYKKKGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILL-YSKL 206
+ + K + L+ E + + + + + + L +
Sbjct: 153 TDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRA 212
Query: 207 EICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYG 266
+ +AS GI + S V + F F V+ L R+ + D Y
Sbjct: 213 KEMPFIASMGIYVISKDVMLNLLRD-KFPGANDFGSEVIPGATSLGMRVQAYLYDG--YW 269
Query: 267 ISVKDWPSYQIASRDIVQRWVHPF 290
+ ++ A+ I ++ V F
Sbjct: 270 EDIGTIEAFYNANLGITKKPVPDF 293
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
RfbF {Salmonella typhimurium [TaxId: 90371]}
Length = 259
Score = 40.8 bits (94), Expect = 2e-04
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVK 80
P ++ + K +L + ++ + GI++ I+ C I+E
Sbjct: 24 PKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFA 67
>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate
adenylyltransferase small subunit, C-terminal domain
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 135
Score = 38.9 bits (90), Expect = 3e-04
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 8/109 (7%)
Query: 329 ENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEH------- 381
+ ++ +IG C I + + S + I + + S+L
Sbjct: 8 LDADVTDSVIGEGCVIKNCK-IHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLA 66
Query: 382 SKLLNGCLLGTGVLIGNKTCLSGVKLPSAGADEVDDGNNDSDEEEVPKF 430
+K +G I ++ D ++ E F
Sbjct: 67 AKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYF 115
Score = 29.3 bits (65), Expect = 0.62
Identities = 7/95 (7%), Positives = 27/95 (28%), Gaps = 5/95 (5%)
Query: 256 YCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVL 315
+ D + G + + + + + + ++ IG +
Sbjct: 42 GAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK---RAIIDKNARIGDNVKI 98
Query: 316 KQQVVIGEGSSIGEN--TQLSHCIIGRNCTIGSNV 348
+ + E + + + + ++ I S +
Sbjct: 99 INKDNVQEAARETDGYFIKSGIVTVIKDALIPSGI 133
>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase,
THDP-succinlytransferase, DapD {Mycobacterium bovis
[TaxId: 1765]}
Length = 274
Score = 40.3 bits (94), Expect = 4e-04
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 307 VLIGKTSVLKQQVVIGEGSSI---GENTQLSHCIIGRNCTIGSNVR-LEKSYLFDNVKIE 362
+G + + + V + G I E Q + II NC IG+ +E + + I
Sbjct: 144 ATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVIS 203
Query: 363 DNCEVRLSVLSYNTGVGE 380
+ S Y+ GE
Sbjct: 204 MGVYLGQSTRIYDRETGE 221
Score = 37.2 bits (86), Expect = 0.005
Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 26/193 (13%)
Query: 233 DFQTQEHFIKGVLINEEILDCRLYCSVVDDI--EYGISVKDWPSYQIASRDIVQRWVHPF 290
+ T + K VL++ I D ++ + + D+ +
Sbjct: 52 QWVTHQWLKKAVLLSFRINDNKVMDGAETRYYDKVPMKFADYDEARFQKEGFR------- 104
Query: 291 VPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL 350
V R I + +VL + G+ + E T ++ T+GS ++
Sbjct: 105 VVPPATVRQG------AFIARNTVLMP-SYVNIGAYVDEGT-----MVDTWATVGSCAQI 152
Query: 351 EK-SYLFDNVKIEDNCEV---RLSVLSYNTGVGEHSKLLNGCLLGTGVLIG-NKTCLSGV 405
K +L V I E +++ N +G S+++ G ++ G +I
Sbjct: 153 GKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQST 212
Query: 406 KLPSAGADEVDDG 418
++ E+ G
Sbjct: 213 RIYDRETGEIHYG 225
>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 173
Score = 37.7 bits (86), Expect = 0.001
Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 3/116 (2%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSN---V 348
Y+ + + + +V+ VV+ E +S+ + L I SN
Sbjct: 2 AIYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDN 61
Query: 349 RLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSG 404
+ +I + + + + + VG + + ++ G IG+ +
Sbjct: 62 VSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGA 117
>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, C-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 196
Score = 37.7 bits (86), Expect = 0.002
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSN 347
Y+ DV I ++ V + + IG T L++ + TIG+
Sbjct: 7 EATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAG 55
Score = 33.5 bits (75), Expect = 0.043
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 319 VVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNC 365
I I Q+ ++ + IG+ L + I
Sbjct: 9 TYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGA 56
Score = 30.8 bits (68), Expect = 0.37
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 10/50 (20%)
Query: 327 IGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNT 376
I + + I I +NV L+ KI + ++
Sbjct: 11 IDIDVE-----IASEVQIEANVTLK-----GQTKIGAETVLTNGTYVVDS 50
Score = 29.3 bits (64), Expect = 1.2
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNC 342
P Y ++ +A +V I LK Q IG + + T + IG
Sbjct: 6 PEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGA 56
Score = 26.6 bits (57), Expect = 8.1
Identities = 14/143 (9%), Positives = 37/143 (25%), Gaps = 2/143 (1%)
Query: 191 KKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEI 250
+ I E +L + + + + ++ S +D H + ++
Sbjct: 31 GQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLGAQV 90
Query: 251 LDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSY--KYRRNNIYLAEDVL 308
I + + + + +V
Sbjct: 91 HIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVF 150
Query: 309 IGKTSVLKQQVVIGEGSSIGENT 331
+G S + V +G+ S +G +
Sbjct: 151 VGSNSTIIAPVELGDNSLVGAGS 173
Score = 26.6 bits (57), Expect = 8.5
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 307 VLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKS 353
+ + K + VIG +G N+ + +G N +G+ + K
Sbjct: 131 ITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKD 178
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 248
Score = 35.5 bits (80), Expect = 0.014
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQI 75
P L L K ++++ ++ + G + + + +
Sbjct: 21 PKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 59
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 229
Score = 35.2 bits (81), Expect = 0.015
Identities = 12/126 (9%), Positives = 38/126 (30%), Gaps = 6/126 (4%)
Query: 468 FYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAIL-----VVKNKP 522
+ +D L+ + L + + Y + + F +K + + K
Sbjct: 100 LPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELG 159
Query: 523 DMDMKSFHTHMMSKINYFLPLF-KNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHK 581
+++ L K + +E + + + + +++ + L +
Sbjct: 160 AKISSILVDWCSDEVDNHFKLIDKQLLNDEMLSPGSIKSSRKQIDGLKAVGLDFVYKLDE 219
Query: 582 LYDKDI 587
K+
Sbjct: 220 FIKKNS 225
>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus
influenzae [TaxId: 727]}
Length = 241
Score = 34.7 bits (79), Expect = 0.020
Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 231 NFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPF 290
++ + + L N+ + + I +GI + +++ V
Sbjct: 114 HYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSIL 173
Query: 291 VPSYKYRRN------NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENT 331
+ + E V+IG + + + +G+ + IG N+
Sbjct: 174 QGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANS 220
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 250
Score = 35.1 bits (79), Expect = 0.021
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH 71
P L + +LE+ + E+ +
Sbjct: 20 PKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHK 54
>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 208
Score = 32.0 bits (72), Expect = 0.13
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 1/73 (1%)
Query: 309 IGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR 368
+ +L + V +G + S G + + + D + I C +
Sbjct: 6 PFRGKLLSE-QVSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIG 64
Query: 369 LSVLSYNTGVGEH 381
G H
Sbjct: 65 SGAAFIMAGNQGH 77
>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon
Methanosarcina thermophila [TaxId: 2210]}
Length = 210
Score = 31.9 bits (71), Expect = 0.14
Identities = 11/87 (12%), Positives = 21/87 (24%), Gaps = 2/87 (2%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSN-VRLEKSYLFDNVKI 361
+ I + + +V IG + G +G + L I
Sbjct: 25 IDPTAYIDPQASVIGEVTIGANVMVSPMAS-IRSDEGMPIFVGDRSNVQDGVVLHALETI 83
Query: 362 EDNCEVRLSVLSYNTGVGEHSKLLNGC 388
+ E + G + N
Sbjct: 84 NEEGEPIEDNIVEVDGKEYAVYIGNNV 110
>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus
faecium, VAT(D) [TaxId: 1352]}
Length = 203
Score = 29.8 bits (66), Expect = 0.71
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 31/131 (23%)
Query: 287 VHPF--VPSYKYRRNNIYLAEDVLIGKTS-------------VLKQQVVIGEGSSIGENT 331
++P S ++ + + E+V +G+ S +L ++ + IG+
Sbjct: 8 MYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKF- 66
Query: 332 QLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLG 391
C IG TI + D ++ + G +H L+ +
Sbjct: 67 ----CSIGPGVTI---------IMNGANHRMDGSTYPFNL--FGNGWEKHMPKLDQLPIK 111
Query: 392 TGVLIGNKTCL 402
+IGN +
Sbjct: 112 GDTIIGNDVWI 122
>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase
BC4754 {Bacillus cereus [TaxId: 1396]}
Length = 172
Score = 29.5 bits (65), Expect = 0.80
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNC 342
Y Y+ +A I + V +GE SSI NT + +
Sbjct: 6 YPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTII 54
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase
LicC {Streptococcus pneumoniae [TaxId: 1313]}
Length = 229
Score = 29.6 bits (65), Expect = 0.89
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIREL 78
P L+ + K L+EY +E L GI +II+ Q L
Sbjct: 25 PKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYL 66
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId:
562]}
Length = 246
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQ 74
L+ + K ++ + LE SG E IIV
Sbjct: 20 LVDINGKPMIVHVLERARESGAERIIVATDHEDVA 54
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Haemophilus influenzae [TaxId:
727]}
Length = 255
Score = 29.3 bits (64), Expect = 1.3
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQ 74
L + K ++++ E SG +I+ +
Sbjct: 20 LADIKGKPMIQHVFEKALQSGASRVIIATDNENVA 54
>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 26.8 bits (58), Expect = 2.9
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 154 LYKKKGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLA 213
L K Q K +++ + D + + ++ K IP+ I
Sbjct: 7 LDKLSPQGKRMFQKRWVK---FDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFEV 63
Query: 214 STGIMIC 220
T
Sbjct: 64 VTTQRTF 70
>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter
jejuni [TaxId: 197]}
Length = 193
Score = 27.6 bits (60), Expect = 3.2
Identities = 13/102 (12%), Positives = 29/102 (28%)
Query: 230 DNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHP 289
+ + I I EE + VV + + I +
Sbjct: 72 KIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFS 131
Query: 290 FVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENT 331
V N+ + ++ +G S + + + + S +G
Sbjct: 132 HVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGA 173
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 274
Score = 27.4 bits (60), Expect = 4.8
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 508 NFYMVKAILVVKNKPDMDMKSFHTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFAEE 567
+ +++ IL + + ++ FLP + + D F A+
Sbjct: 86 DGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS 145
Query: 568 NESLSVVAGKLLHKLYDKDILSEDIVTKWFNKL 600
V+ + + + ++ TK F
Sbjct: 146 ENQYDVI----MVDSTEPVGPAVNLFTKGFYAG 174
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase
oxygenase subunit TouE {Pseudomonas stutzeri [TaxId:
316]}
Length = 322
Score = 27.5 bits (61), Expect = 4.8
Identities = 3/40 (7%), Positives = 15/40 (37%)
Query: 543 LFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKL 582
+++ Y + Q+ + + + ++ + + L
Sbjct: 75 VYRTYNLLQDGQESYVQGLFDQLNDRGHDQMLTREWVETL 114
>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli
[TaxId: 562]}
Length = 182
Score = 27.1 bits (59), Expect = 5.3
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 3/94 (3%)
Query: 239 HFIKGVLINEE-ILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYR 297
+ + + + V I G + P I + V + +
Sbjct: 68 DYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGK 127
Query: 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENT 331
I +V IG +V+ V IG+ +
Sbjct: 128 PVTIG--NNVWIGGRAVINPGVTIGDNVVVASGA 159
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179
{Thermus thermophilus [TaxId: 274]}
Length = 231
Score = 27.1 bits (59), Expect = 5.7
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 39 CLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH 71
L+P + ++E+ LE L+ +G+ + V
Sbjct: 25 ALVPYRGRPMVEWVLEALYAAGLSPVYVGENPG 57
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 430
Score = 27.0 bits (59), Expect = 7.0
Identities = 22/193 (11%), Positives = 47/193 (24%), Gaps = 23/193 (11%)
Query: 389 LLGTGVLIGNKTCL--SGVKL-PSAGADEVDDGNNDSDEEEVPKFK------------CE 433
LL +G++ +GV + +E + ++ +
Sbjct: 57 LLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQA 116
Query: 434 SEQELDSDESDSESENDVDSVDGQGTPPMDDTSLFYTEVVDSLLRGYEEKLVCDNLTLEI 493
+ + E +N + G G + + D L E NL
Sbjct: 117 VDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNL---- 172
Query: 494 NSSRYAYNVTVKEVNFYMVKAILVVKNKPDMDMKSFHTHMMSKINYFLPLFKNYIKNESA 553
+ ++ V+ L ++ + + L + E A
Sbjct: 173 ----AHQHQSMFPTLEIDVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGA 228
Query: 554 QQDCLDAFEEFAE 566
LD
Sbjct: 229 NAALLDIDFGTYP 241
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 25.4 bits (56), Expect = 9.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 87 VGTLITLIVSDGCYSFGDVMRDLDGKAVIRND 118
V +LITL D YS + D + + +
Sbjct: 33 VDSLITLAFQDQRYSV----QTADHRFLRHDG 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.390
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,312,946
Number of extensions: 110464
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 56
Length of query: 627
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 536
Effective length of database: 1,158,166
Effective search space: 620776976
Effective search space used: 620776976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)