BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14827
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CPX9|APC11_MOUSE Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11
PE=3 SV=1
Length = 84
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 63/77 (81%), Positives = 69/77 (89%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLN+Q
Sbjct: 8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67
Query: 204 QVHHQCPMCRQEWKFKE 220
QV CPMCRQEWKFKE
Sbjct: 68 QVQQHCPMCRQEWKFKE 84
>sp|Q3ZCF6|APC11_BOVIN Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3
SV=1
Length = 84
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 63/77 (81%), Positives = 69/77 (89%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLN+Q
Sbjct: 8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67
Query: 204 QVHHQCPMCRQEWKFKE 220
QV CPMCRQEWKFKE
Sbjct: 68 QVQQHCPMCRQEWKFKE 84
>sp|Q5R8A2|APC11_PONAB Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11
PE=3 SV=1
Length = 84
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/77 (80%), Positives = 69/77 (89%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWL++Q
Sbjct: 8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQ 67
Query: 204 QVHHQCPMCRQEWKFKE 220
QV CPMCRQEWKFKE
Sbjct: 68 QVQQHCPMCRQEWKFKE 84
>sp|Q9NYG5|APC11_HUMAN Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11
PE=1 SV=1
Length = 84
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/77 (80%), Positives = 69/77 (89%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWL++Q
Sbjct: 8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQ 67
Query: 204 QVHHQCPMCRQEWKFKE 220
QV CPMCRQEWKFKE
Sbjct: 68 QVQQHCPMCRQEWKFKE 84
>sp|Q9M9L0|APC11_ARATH Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana
GN=APC11 PE=1 SV=2
Length = 84
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 66/80 (82%)
Query: 141 MVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWL 200
++ W VA+W W A D+TCGICR+AF+GCC DCKLPGDDCPL+WG C+H FH+HCI+KW+
Sbjct: 5 ILRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWV 64
Query: 201 NSQQVHHQCPMCRQEWKFKE 220
NSQ CPMCR+EW+FKE
Sbjct: 65 NSQTSQAHCPMCRREWQFKE 84
>sp|Q54L48|APC11_DICDI Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum
GN=anapc11 PE=3 SV=1
Length = 87
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
W V+ W W N++ CGICR+AF+GCC DCK+PGDDCP VWG C+H FH+HCI+KWLN+
Sbjct: 9 WNTVSAWHWDVNEECCGICRMAFDGCCVDCKIPGDDCPPVWGVCNHAFHMHCILKWLNAN 68
Query: 204 QVHHQCPMCRQEWKFK 219
++ QCPMCR EW+FK
Sbjct: 69 EL-QQCPMCRSEWRFK 83
>sp|Q9UT86|APC11_SCHPO Anaphase-promoting complex subunit 11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=apc11 PE=1 SV=1
Length = 94
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 141 MVGWTGVATWRW-VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKW 199
++ + +A W W DD CGICR+ F+GCC C PGD+CP+VWG+C H FH HCI W
Sbjct: 5 ILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNW 64
Query: 200 LNSQQVHHQCPMCRQEWKFKE 220
L + QCPM RQ + +
Sbjct: 65 LATSGSQGQCPMDRQTFVVAD 85
>sp|Q12157|APC11_YEAST Anaphase-promoting complex subunit 11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APC11 PE=1 SV=1
Length = 165
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
++D CGICR ++ G C CK PGD CPLV G C H FH HCI +WL++ CPMCRQ
Sbjct: 37 DEDVCGICRASYNGTCPSCKFPGDQCPLVIGLCHHNFHDHCIYRWLDTPTSKGLCPMCRQ 96
Query: 215 EWKFKE 220
++ ++
Sbjct: 97 TFQLQK 102
>sp|Q23457|RBX1_CAEEL RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1
Length = 110
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMK 198
W+ VA W W D C ICR C +C+ D+C + WG C+H FH HCI +
Sbjct: 29 WSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISR 88
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL ++QV CP+ +EW+F++
Sbjct: 89 WLKTRQV---CPLDNREWEFQK 107
>sp|O13959|RBX1_SCHPO RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pip1 PE=1 SV=2
Length = 107
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGD-----DCPLVWGQCSHCFHIHCIMK 198
W VA W+W D C ICR C +C+ D +C + WG C+H FH HCI +
Sbjct: 26 WNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISR 85
Query: 199 WLNSQQVHHQCPMCRQEWKFK 219
WLN++ V CP+ +EW+F+
Sbjct: 86 WLNTRNV---CPLDNREWEFQ 103
>sp|Q940X7|RBX1A_ARATH RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1
Length = 118
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
W+ VA W W D C ICR C +C+ ++C + WG C+H FH HCI +
Sbjct: 37 WSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL ++QV CP+ EW+F++
Sbjct: 97 WLKTRQV---CPLDNSEWEFQK 115
>sp|Q8QG64|RBX1_SALSA RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2
Length = 108
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
W VA W W D C ICR C +C+ ++C + WG C+H FH HCI +
Sbjct: 27 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 86
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL ++QV CP+ +EW+F++
Sbjct: 87 WLKTRQV---CPLDNREWEFQK 105
>sp|P62878|RBX1_MOUSE E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1
Length = 108
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
W VA W W D C ICR C +C+ ++C + WG C+H FH HCI +
Sbjct: 27 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 86
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL ++QV CP+ +EW+F++
Sbjct: 87 WLKTRQV---CPLDNREWEFQK 105
>sp|P62877|RBX1_HUMAN E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1
Length = 108
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
W VA W W D C ICR C +C+ ++C + WG C+H FH HCI +
Sbjct: 27 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 86
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL ++QV CP+ +EW+F++
Sbjct: 87 WLKTRQV---CPLDNREWEFQK 105
>sp|Q9W5E1|RBX1A_DROME RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1
Length = 108
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
W VA W W D C ICR C +C+ ++C + WG C+H FH HCI +
Sbjct: 27 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 86
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL ++QV CP+ +EW F++
Sbjct: 87 WLKTRQV---CPLDNREWDFQK 105
>sp|Q54K33|RBX1_DICDI RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1
Length = 104
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
W VA W W D C ICR C +C+ ++C + WG C+H FH HCI +
Sbjct: 23 WNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEECTVAWGICNHAFHFHCISR 82
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL S+QV CP+ ++W+F++
Sbjct: 83 WLKSRQV---CPLDNRDWEFQK 101
>sp|Q9M2B0|RBX1B_ARATH RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1
Length = 115
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDC-----KLPGDDCPLVWGQCSHCFHIHCIMK 198
W+ VA W W D C ICR C +C ++C + WG C+H FH HCI +
Sbjct: 34 WSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAFHFHCISR 93
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL ++QV CP+ EW+F++
Sbjct: 94 WLKTRQV---CPLDVCEWEFQK 112
>sp|Q9NHX0|RBX1B_DROME RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=2 SV=2
Length = 122
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLP----GDDCPLVWGQCSHCFHIHCIMKW 199
W A W W D C ICR C +C+ D+C + WG+C+H FH HCI +W
Sbjct: 42 WVAHAMWGWDVAVDNCAICRNHIMNLCIECQADPNANQDECTVAWGECNHAFHYHCIARW 101
Query: 200 LNSQQVHHQCPMCRQEWKFKE 220
L ++ V CP+ +EW +++
Sbjct: 102 LKTRLV---CPLDNKEWVYQK 119
>sp|Q9UBF6|RBX2_HUMAN RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1
Length = 113
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPG--DDCPLVWGQCSHCFHIHCIMKWLN 201
W VA W W DTC ICR+ C C+ +DC +VWG+C+H FH C+ W+
Sbjct: 35 WNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK 94
Query: 202 SQQVHHQCPMCRQEW 216
+++CP+C+Q+W
Sbjct: 95 Q---NNRCPLCQQDW 106
>sp|Q9WTZ1|RBX2_MOUSE RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1
Length = 113
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPG--DDCPLVWGQCSHCFHIHCIMKWLN 201
W VA W W DTC ICR+ C C+ +DC +VWG+C+H FH C+ W+
Sbjct: 35 WNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK 94
Query: 202 SQQVHHQCPMCRQEW 216
+++CP+C+Q+W
Sbjct: 95 Q---NNRCPLCQQDW 106
>sp|Q08273|RBX1_YEAST RING-box protein HRT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HRT1 PE=1 SV=1
Length = 121
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPG-----DDCPLVWGQCSHCFHIHCIMK 198
WT VA W W D C ICR C +C+ ++C WG C+H FH+HCI K
Sbjct: 40 WTAVAFWSWDIAVDNCAICRNHIMEPCIECQPKAMTDTDNECVAAWGVCNHAFHLHCINK 99
Query: 199 WLNSQQVHHQCPMCRQEWKF 218
W+ ++ CP+ Q W+
Sbjct: 100 WIKTRDA---CPLDNQPWQL 116
>sp|Q5UQ40|UBC4_MIMIV Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R795 PE=3 SV=1
Length = 1297
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 156 DDTCGICRIAFEGCCSDCKLPGDD--CPLVWG-QCSHCFHIHCIMKWLNSQQVHHQCPMC 212
+ +C ICR C + K + CP+ CSH FH CI +WL++++ CP+C
Sbjct: 71 NSSCAICRYQENEPCIEHKSSESNTKCPIAQSVSCSHSFHACCISRWLHTKKT---CPLC 127
Query: 213 RQEWKF 218
EW+
Sbjct: 128 NIEWQL 133
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
+ C IC D KLP CP C + FH C+ KW S ++ CP+CR E
Sbjct: 1506 EECAICYSILHAV--DRKLPSKTCP----TCKNKFHGACLYKWFRSSG-NNTCPLCRSEI 1558
Query: 217 KFK 219
F+
Sbjct: 1559 PFR 1561
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 147 VATWRWVAND--DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ 204
++T + ND TC +C + KLP CSH +HIHCI +WL+
Sbjct: 689 LSTRNYGENDALKTCSVCITEYTEGNKLRKLP----------CSHEYHIHCIDRWLSE-- 736
Query: 205 VHHQCPMCRQ 214
+ CP+CR+
Sbjct: 737 -NSTCPICRR 745
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 120 SAHKADQVTRLAKSKATPFN---PMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLP 176
+ HKA L++ N P+V +A A D TC ICR S +LP
Sbjct: 255 ALHKAFLDVILSRRAINAMNSQFPVVSAEDLA-----AMDATCIICREEMTVDASPKRLP 309
Query: 177 GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
CSH FH HC+ W QQ CP CR +
Sbjct: 310 ----------CSHVFHAHCLRSWFQRQQT---CPTCRTD 335
>sp|O74349|LTN1_SCHPO E3 ubiquitin-protein ligase listerin OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21D10.09c PE=3 SV=1
Length = 1610
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 162 CRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218
C I + + LP C G C H FH C+ KW S +CP+CR + F
Sbjct: 1558 CAICYSVLSVERTLPNKRC----GTCRHKFHASCLYKWFKSSN-SSRCPLCRSSFTF 1609
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 140 PMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQ-CSHCFHIHCIMK 198
P ++ V ++ C IC FE D+ PL W CSH FH +CI +
Sbjct: 101 PAFLYSEVKAFKIGNGGVECAICLCEFE----------DEEPLRWMPPCSHTFHANCIDE 150
Query: 199 WLNSQQVHHQCPMCRQEWKFK 219
WL+S+ CP+CR K
Sbjct: 151 WLSSRST---CPVCRANLSLK 168
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
DD C IC +F C SD P C H +H+ CI++W Q QCPMC Q
Sbjct: 30 DDACSICLESF--CESD--------PSTLTSCKHEYHLQCILEWC---QRSSQCPMCWQS 76
Query: 216 WKFKE 220
K+
Sbjct: 77 ISLKD 81
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 147 VATWRWVAND--DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ 204
++T + ND TC +C + KLP CSH +HIHCI +WL+
Sbjct: 554 LSTRNFGENDALKTCSVCITEYTEGNKLRKLP----------CSHEYHIHCIDRWLSENS 603
Query: 205 VHHQCPMCRQ 214
CP+CR+
Sbjct: 604 T---CPICRR 610
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
A D TC ICR S +LP CSH FH HC+ W QQ CP CR
Sbjct: 287 AMDATCIICREEMTVESSPKRLP----------CSHVFHAHCLRSWFQRQQT---CPTCR 333
Query: 214 QE 215
+
Sbjct: 334 TD 335
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 147 VATWRWVAND--DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ 204
++T + ND TC +C + KLP CSH +H+HCI +WL+
Sbjct: 571 LSTRNFGENDALKTCSVCITEYTEGNKLRKLP----------CSHEYHVHCIDRWLSENS 620
Query: 205 VHHQCPMCRQ 214
CP+CR+
Sbjct: 621 T---CPICRR 627
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 148 ATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHH 207
+ + D+ C +C FE D+C + QC+H FH CI +WL S Q +
Sbjct: 514 GVFPFSGTDERCLVCLSNFE--------LNDECRRLK-QCNHFFHRECIDQWLTSSQ--N 562
Query: 208 QCPMCR 213
CP+CR
Sbjct: 563 SCPLCR 568
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 18/74 (24%)
Query: 140 PMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKW 199
P VG T A R C +C + FE LP C H FH+ CI +W
Sbjct: 143 PAVGKTSAANCR------DCAVCLLEFEEGDYVRTLP---------LCFHAFHLECIDEW 187
Query: 200 LNSQQVHHQCPMCR 213
L S H CP+CR
Sbjct: 188 LRS---HPNCPLCR 198
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
+C HCFH+ CI +WL ++H CP+CR
Sbjct: 271 ECDHCFHVQCIDEWL---KIHSSCPVCR 295
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
TC +C + KLP CSH +H+HCI +WL+ CP+CR+
Sbjct: 545 TCSVCITEYTEGNKLRKLP----------CSHEYHVHCIDRWLSENST---CPICRR 588
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 13/60 (21%)
Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
+++C ICR+ +E DD L+ C H +H CI WL +++ CP+C E
Sbjct: 285 NESCVICRLDYE----------DDEDLILLPCKHSYHSECINNWL---KINKVCPVCSAE 331
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 140 PMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKW 199
P ++ V T + + C IC FE D+ + +C H FH HCI W
Sbjct: 109 PTFLYSDVKTQKLGKGELECAICLNEFED---------DETLRLLPKCDHVFHPHCIDAW 159
Query: 200 LNSQQVHHQCPMCR 213
L + H CP+CR
Sbjct: 160 L---EAHVTCPVCR 170
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
TC +C + KLP CSH +H+HCI +WL+ CP+CR+
Sbjct: 569 TCSVCITEYTEGNKLRKLP----------CSHEYHVHCIDRWLSENST---CPICRR 612
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 20/95 (21%)
Query: 133 SKATPFNPMVGWTGVATWRWVA-------NDDTCGICRIAFEGCCSDCKLPGDDCPLVWG 185
S +PFNP +G + ++ V DD C IC F D P
Sbjct: 13 SDNSPFNPAIGSSSSSSSALVVASDDDNNTDDACSICLEPF--TLQD--------PSTVT 62
Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE 220
C H +H+ CI++W Q +CP+C Q + ++
Sbjct: 63 SCKHEYHLQCIIEW---SQRSKECPICWQLFVLRD 94
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 15/52 (28%)
Query: 174 KLPGDDCPLVWGQ------------CSHCFHIHCIMKWLNSQQVHHQCPMCR 213
K+ G DC + G+ C+H FH+ CI +WL S H CP+CR
Sbjct: 149 KINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKS---HSNCPLCR 197
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 173 CKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
C+ +D + +CSH FH+ CI WL S H CP+CR
Sbjct: 131 CEFETEDKLRLLPKCSHAFHVECIDTWLLS---HSTCPLCR 168
>sp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana
GN=ATL21C PE=3 SV=1
Length = 366
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
+C HCFH+ CI WL ++H CP+CR
Sbjct: 338 ECDHCFHVECIDVWL---KIHGSCPLCRN 363
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
C IC FE D+ + +C H FH HCI WL Q H CP+CR
Sbjct: 124 CAICLNEFED---------DETLRLLPKCDHVFHPHCIGAWL---QGHVTCPVCR 166
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 142 VGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN 201
+ G + + C +C FE D+ + +CSH FH++CI WL
Sbjct: 118 ITVVGFKKGEGIIDGTECSVCLNEFEE---------DESLRLLPKCSHAFHLNCIDTWLL 168
Query: 202 SQQVHHQCPMCR 213
S H CP+CR
Sbjct: 169 S---HKNCPLCR 177
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 140 PMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKW 199
P+ ++ V + + D C IC E + LP C+H FHI CI W
Sbjct: 105 PVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLP---------ICNHLFHIDCIDTW 155
Query: 200 LNSQQVHHQCPMCRQEWKFK 219
L S H CP+CR K
Sbjct: 156 LYS---HATCPVCRSNLTAK 172
>sp|O49691|ATL29_ARATH RING-H2 finger protein ATL29 OS=Arabidopsis thaliana GN=ATL29 PE=3
SV=1
Length = 289
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 140 PMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKW 199
P ++ V R C IC + F+G D + C H FH CI W
Sbjct: 91 PTFPYSSVKDLREEKYGLECAICLLEFDG---------DHVLRLLTTCYHVFHQECIDLW 141
Query: 200 LNSQQVHHQCPMCRQE 215
S H CP+CR++
Sbjct: 142 FES---HRTCPVCRRD 154
>sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2
SV=2
Length = 185
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
C IC F GD+ V QC H FH+ CI WL S H CP CRQ
Sbjct: 104 CAICLTEFAA--------GDEL-RVLPQCGHGFHVSCIDTWLGS---HSSCPSCRQ 147
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
C IC F GD+ V QC H FH+ CI WL S H CP CRQ
Sbjct: 111 CAICLAEFSA--------GDELR-VLPQCGHGFHVACIDTWLGS---HSSCPSCRQ 154
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 170 CSDC--KLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
CS C + ++ V C H FH+HCI W +S H CP+CR +
Sbjct: 76 CSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHS---HSSCPLCRSQ 120
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 160 GICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
G+ F+ C+ +D + +CSH FH+ CI WL S H CP+CR
Sbjct: 126 GLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLS---HSTCPLCR 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,024,003
Number of Sequences: 539616
Number of extensions: 3602963
Number of successful extensions: 11754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 292
Number of HSP's that attempted gapping in prelim test: 11534
Number of HSP's gapped (non-prelim): 445
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)