Query psy14827
Match_columns 220
No_of_seqs 195 out of 1728
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:49:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12861 zf-Apc11: Anaphase-pr 99.9 7.9E-24 1.7E-28 156.9 5.0 82 139-220 3-85 (85)
2 KOG1493|consensus 99.8 1.5E-22 3.3E-27 146.3 1.6 82 139-220 3-84 (84)
3 COG5194 APC11 Component of SCF 99.8 5.2E-22 1.1E-26 144.6 4.1 80 138-220 2-84 (88)
4 KOG2930|consensus 99.8 4.6E-21 9.9E-26 145.9 1.8 82 135-219 25-110 (114)
5 PF12678 zf-rbx1: RING-H2 zinc 99.8 1.5E-20 3.3E-25 136.2 2.8 73 138-213 1-73 (73)
6 PF13639 zf-RING_2: Ring finge 99.5 7.8E-15 1.7E-19 95.8 2.5 44 157-213 1-44 (44)
7 KOG0317|consensus 99.4 1E-14 2.2E-19 129.0 -0.1 47 155-217 238-284 (293)
8 KOG4628|consensus 99.3 3.7E-13 8.1E-18 122.7 2.6 47 158-216 231-277 (348)
9 KOG0823|consensus 99.3 2.8E-12 6E-17 110.6 3.6 52 155-219 46-97 (230)
10 PHA02929 N1R/p28-like protein; 99.3 3.3E-12 7.3E-17 111.6 4.0 57 155-219 173-229 (238)
11 PLN03208 E3 ubiquitin-protein 99.1 7.7E-11 1.7E-15 99.8 4.8 51 155-218 17-80 (193)
12 PF13923 zf-C3HC4_2: Zinc fing 99.1 5.4E-11 1.2E-15 75.8 2.4 39 159-212 1-39 (39)
13 cd00162 RING RING-finger (Real 99.1 1.2E-10 2.6E-15 73.9 3.8 45 158-216 1-45 (45)
14 COG5243 HRD1 HRD ubiquitin lig 99.1 1.2E-10 2.5E-15 106.6 4.7 61 154-219 285-347 (491)
15 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.6E-10 5.6E-15 76.3 3.2 46 156-217 2-48 (50)
16 PHA02926 zinc finger-like prot 99.0 5.1E-10 1.1E-14 96.4 4.3 61 155-219 169-232 (242)
17 KOG0320|consensus 99.0 3.3E-10 7.3E-15 94.4 2.8 49 156-218 131-179 (187)
18 COG5540 RING-finger-containing 98.9 4.5E-10 9.8E-15 100.5 2.1 48 157-216 324-371 (374)
19 PF15227 zf-C3HC4_4: zinc fing 98.8 1.5E-09 3.2E-14 70.7 2.4 41 159-212 1-42 (42)
20 PF00097 zf-C3HC4: Zinc finger 98.8 2E-09 4.2E-14 68.8 2.6 41 159-212 1-41 (41)
21 smart00504 Ubox Modified RING 98.8 3.6E-09 7.9E-14 73.1 3.8 45 158-218 3-47 (63)
22 COG5574 PEX10 RING-finger-cont 98.8 2.4E-09 5.2E-14 94.1 2.9 53 149-218 209-263 (271)
23 PF14634 zf-RING_5: zinc-RING 98.7 8.8E-09 1.9E-13 67.3 3.1 44 158-214 1-44 (44)
24 smart00184 RING Ring finger. E 98.7 1.1E-08 2.4E-13 62.5 3.3 39 159-212 1-39 (39)
25 TIGR00599 rad18 DNA repair pro 98.6 2E-08 4.3E-13 93.7 3.1 45 157-217 27-71 (397)
26 KOG0802|consensus 98.6 2E-08 4.3E-13 97.1 2.6 50 155-215 290-339 (543)
27 COG5432 RAD18 RING-finger-cont 98.5 8.2E-08 1.8E-12 85.8 3.6 46 157-218 26-71 (391)
28 KOG2164|consensus 98.5 6.3E-08 1.4E-12 91.8 2.8 51 156-219 186-238 (513)
29 KOG0287|consensus 98.5 9.3E-08 2E-12 87.0 3.5 43 158-216 25-67 (442)
30 PF13445 zf-RING_UBOX: RING-ty 98.4 1.6E-07 3.4E-12 61.5 2.9 42 159-210 1-43 (43)
31 KOG1734|consensus 98.4 5.3E-08 1.1E-12 86.1 0.4 62 154-219 222-283 (328)
32 COG5219 Uncharacterized conser 98.4 1.5E-07 3.2E-12 94.5 2.2 58 155-219 1468-1525(1525)
33 PF11793 FANCL_C: FANCL C-term 98.2 2.2E-07 4.9E-12 66.7 0.2 55 157-219 3-68 (70)
34 smart00744 RINGv The RING-vari 98.1 1.8E-06 3.9E-11 57.9 3.0 43 159-213 2-49 (49)
35 KOG0804|consensus 98.1 8.1E-07 1.7E-11 83.3 0.9 45 156-214 175-219 (493)
36 KOG2177|consensus 98.1 1.4E-06 3.1E-11 73.7 1.9 44 155-214 12-55 (386)
37 PF04564 U-box: U-box domain; 98.1 2.2E-06 4.8E-11 61.7 2.6 47 157-218 5-51 (73)
38 KOG0828|consensus 98.0 2.2E-06 4.7E-11 81.3 2.2 60 155-216 570-633 (636)
39 PF14835 zf-RING_6: zf-RING of 98.0 8.9E-07 1.9E-11 62.6 -0.6 43 157-216 8-50 (65)
40 KOG0825|consensus 98.0 1.6E-06 3.5E-11 85.8 0.7 48 157-217 124-171 (1134)
41 KOG0978|consensus 97.8 1E-05 2.2E-10 80.0 1.7 46 157-217 644-689 (698)
42 KOG0311|consensus 97.7 6E-06 1.3E-10 75.5 -0.9 47 156-216 43-89 (381)
43 PF11789 zf-Nse: Zinc-finger o 97.6 2.2E-05 4.8E-10 54.3 1.4 43 156-211 11-53 (57)
44 KOG4445|consensus 97.4 5.8E-05 1.2E-09 68.0 1.4 55 155-219 114-188 (368)
45 KOG4172|consensus 97.4 5.2E-05 1.1E-09 52.1 0.7 46 157-217 8-54 (62)
46 KOG0297|consensus 97.4 7.7E-05 1.7E-09 69.8 1.7 48 155-217 20-67 (391)
47 KOG1039|consensus 97.4 0.00013 2.7E-09 67.3 3.0 60 155-219 160-223 (344)
48 PHA02862 5L protein; Provision 97.2 0.00026 5.6E-09 57.7 3.1 50 157-219 3-55 (156)
49 KOG4265|consensus 97.2 0.00026 5.6E-09 65.0 3.1 46 156-217 290-336 (349)
50 COG5152 Uncharacterized conser 97.2 0.00015 3.2E-09 62.1 1.2 43 157-215 197-239 (259)
51 KOG1645|consensus 97.2 0.00021 4.5E-09 66.7 2.1 37 157-201 5-41 (463)
52 PHA02825 LAP/PHD finger-like p 97.1 0.00056 1.2E-08 56.5 3.5 52 155-219 7-61 (162)
53 KOG1785|consensus 96.9 0.00025 5.4E-09 66.2 0.2 48 156-217 369-416 (563)
54 KOG4159|consensus 96.8 0.00061 1.3E-08 64.0 2.2 46 156-217 84-129 (398)
55 KOG3970|consensus 96.7 0.0014 3E-08 57.2 3.4 50 156-216 50-104 (299)
56 KOG1952|consensus 96.4 0.0045 9.7E-08 62.5 5.3 51 155-214 190-244 (950)
57 KOG1813|consensus 96.4 0.00098 2.1E-08 60.0 0.6 44 157-216 242-285 (313)
58 KOG1941|consensus 96.4 0.0017 3.7E-08 60.6 1.8 47 157-213 366-412 (518)
59 KOG1428|consensus 96.1 0.0037 8E-08 66.2 2.6 53 155-217 3485-3544(3738)
60 PHA03096 p28-like protein; Pro 96.0 0.0044 9.5E-08 55.8 2.6 57 157-218 179-238 (284)
61 KOG2660|consensus 95.9 0.0022 4.8E-08 58.4 0.4 44 157-215 16-59 (331)
62 KOG2114|consensus 95.9 0.0033 7.1E-08 63.4 1.4 43 156-216 840-882 (933)
63 PF10367 Vps39_2: Vacuolar sor 95.9 0.0027 5.8E-08 47.7 0.5 32 155-197 77-108 (109)
64 KOG2879|consensus 95.7 0.0093 2E-07 53.4 3.2 50 155-217 238-287 (298)
65 PF12906 RINGv: RING-variant d 95.7 0.0044 9.6E-08 41.1 0.8 43 159-212 1-47 (47)
66 KOG0826|consensus 95.5 0.0096 2.1E-07 54.5 2.8 46 155-215 299-344 (357)
67 PF14570 zf-RING_4: RING/Ubox 95.5 0.011 2.4E-07 39.6 2.4 48 159-217 1-48 (48)
68 KOG1002|consensus 95.4 0.0081 1.7E-07 58.2 1.9 49 155-216 535-585 (791)
69 KOG1571|consensus 94.9 0.013 2.9E-07 54.0 1.7 45 154-217 303-347 (355)
70 PF05883 Baculo_RING: Baculovi 94.8 0.013 2.8E-07 47.3 1.3 37 156-202 26-68 (134)
71 COG5236 Uncharacterized conser 94.8 0.025 5.4E-07 52.3 3.2 51 154-218 59-109 (493)
72 KOG3268|consensus 94.6 0.037 8E-07 46.9 3.5 34 186-219 189-230 (234)
73 COG5222 Uncharacterized conser 94.3 0.03 6.4E-07 51.0 2.4 44 157-214 275-318 (427)
74 KOG0309|consensus 93.9 0.029 6.3E-07 56.4 1.7 51 157-211 1019-1069(1081)
75 KOG2034|consensus 93.4 0.039 8.4E-07 56.2 1.7 37 154-201 815-851 (911)
76 PF10272 Tmpp129: Putative tra 93.4 0.056 1.2E-06 50.2 2.7 31 186-216 310-350 (358)
77 KOG4275|consensus 93.0 0.017 3.6E-07 52.3 -1.4 41 156-216 300-341 (350)
78 KOG0827|consensus 92.7 0.011 2.4E-07 55.2 -3.0 50 156-217 196-245 (465)
79 PF04641 Rtf2: Rtf2 RING-finge 92.6 0.075 1.6E-06 47.0 2.2 48 157-217 114-161 (260)
80 COG5175 MOT2 Transcriptional r 92.4 0.11 2.4E-06 48.0 3.1 53 154-217 12-64 (480)
81 PF14447 Prok-RING_4: Prokaryo 92.0 0.061 1.3E-06 37.0 0.6 32 183-219 21-52 (55)
82 KOG1001|consensus 91.8 0.069 1.5E-06 53.5 1.0 45 157-216 455-499 (674)
83 KOG3039|consensus 91.7 0.13 2.9E-06 45.6 2.5 49 156-216 221-269 (303)
84 KOG1814|consensus 91.5 0.11 2.3E-06 49.0 2.0 47 157-213 185-236 (445)
85 PF05290 Baculo_IE-1: Baculovi 91.0 0.28 6.1E-06 39.6 3.6 52 157-217 81-132 (140)
86 KOG4692|consensus 90.9 0.17 3.8E-06 47.0 2.6 48 153-216 419-466 (489)
87 COG5183 SSM4 Protein involved 90.8 0.19 4.1E-06 51.1 2.9 54 155-220 11-69 (1175)
88 PF08746 zf-RING-like: RING-li 90.7 0.19 4.2E-06 32.6 2.0 25 187-212 19-43 (43)
89 KOG0298|consensus 89.8 0.11 2.5E-06 54.8 0.5 43 157-214 1154-1196(1394)
90 KOG1940|consensus 89.6 0.23 5.1E-06 44.6 2.3 46 157-214 159-204 (276)
91 KOG0801|consensus 89.3 0.14 3.1E-06 42.8 0.7 29 155-193 176-204 (205)
92 KOG3899|consensus 87.6 0.38 8.3E-06 43.7 2.2 30 187-216 325-364 (381)
93 PF14446 Prok-RING_1: Prokaryo 87.5 0.65 1.4E-05 31.9 2.9 47 157-219 6-54 (54)
94 KOG3053|consensus 87.3 0.32 6.9E-06 43.4 1.5 56 155-218 19-83 (293)
95 PF07800 DUF1644: Protein of u 87.2 0.8 1.7E-05 38.1 3.8 45 156-202 2-48 (162)
96 KOG2817|consensus 87.2 0.5 1.1E-05 44.4 2.8 49 157-215 335-383 (394)
97 KOG3002|consensus 86.6 0.53 1.2E-05 42.8 2.7 43 157-217 49-91 (299)
98 KOG1812|consensus 84.6 0.48 1E-05 44.4 1.4 45 157-212 307-351 (384)
99 KOG4718|consensus 83.7 0.61 1.3E-05 40.5 1.6 45 157-216 182-226 (235)
100 KOG2932|consensus 82.8 0.6 1.3E-05 42.8 1.2 27 185-216 107-133 (389)
101 KOG4362|consensus 82.8 0.35 7.6E-06 48.4 -0.3 48 157-217 22-69 (684)
102 KOG1829|consensus 81.6 0.47 1E-05 46.7 0.1 29 185-219 535-563 (580)
103 KOG3039|consensus 80.7 1.6 3.4E-05 39.0 3.0 33 157-202 44-76 (303)
104 KOG3161|consensus 79.0 0.98 2.1E-05 45.1 1.3 43 157-214 12-54 (861)
105 PF02891 zf-MIZ: MIZ/SP-RING z 78.9 2.2 4.9E-05 28.4 2.7 45 158-215 4-50 (50)
106 KOG2066|consensus 77.3 0.83 1.8E-05 46.4 0.3 42 155-202 783-824 (846)
107 KOG0802|consensus 76.4 1.3 2.8E-05 43.3 1.3 45 155-219 478-522 (543)
108 KOG4185|consensus 74.4 2.4 5.1E-05 37.7 2.4 38 157-201 4-41 (296)
109 COG5109 Uncharacterized conser 73.3 2.4 5.3E-05 39.0 2.2 48 157-214 337-384 (396)
110 KOG1812|consensus 73.1 2.1 4.5E-05 40.2 1.7 47 156-211 146-195 (384)
111 KOG0269|consensus 71.1 3.5 7.5E-05 41.9 2.9 40 157-211 780-820 (839)
112 KOG3842|consensus 70.0 3.8 8.2E-05 37.9 2.7 56 157-215 291-350 (429)
113 PF01363 FYVE: FYVE zinc finge 68.8 0.96 2.1E-05 31.5 -1.1 42 150-200 3-44 (69)
114 KOG1815|consensus 68.6 3.5 7.7E-05 39.2 2.3 37 155-203 69-105 (444)
115 PF04710 Pellino: Pellino; In 68.5 1.6 3.5E-05 41.1 0.0 59 157-218 278-340 (416)
116 COG5220 TFB3 Cdk activating ki 68.3 2.7 5.7E-05 37.5 1.3 50 155-213 9-60 (314)
117 PF03854 zf-P11: P-11 zinc fin 66.5 2 4.4E-05 28.8 0.1 28 187-217 19-46 (50)
118 PTZ00303 phosphatidylinositol 65.7 11 0.00023 39.0 5.0 60 138-201 441-501 (1374)
119 PF06844 DUF1244: Protein of u 65.5 4.2 9E-05 29.1 1.6 12 191-202 12-23 (68)
120 PF13717 zinc_ribbon_4: zinc-r 63.4 3.5 7.7E-05 25.6 0.8 33 158-192 4-36 (36)
121 smart00064 FYVE Protein presen 62.8 7.1 0.00015 26.9 2.4 44 150-202 4-47 (68)
122 KOG1815|consensus 60.7 2.7 5.8E-05 40.0 -0.2 38 157-202 227-267 (444)
123 PLN02189 cellulose synthase 59.8 7.5 0.00016 41.0 2.9 52 157-217 35-87 (1040)
124 PF13901 DUF4206: Domain of un 58.3 5.8 0.00013 33.8 1.5 26 181-214 172-197 (202)
125 PF14569 zf-UDP: Zinc-binding 58.3 14 0.0003 27.3 3.2 53 156-217 9-62 (80)
126 KOG1356|consensus 57.6 4.9 0.00011 41.3 1.1 49 155-214 228-279 (889)
127 smart00132 LIM Zinc-binding do 56.5 6.6 0.00014 23.2 1.2 36 159-216 2-37 (39)
128 PF04423 Rad50_zn_hook: Rad50 55.2 4.2 9E-05 27.2 0.1 12 206-217 20-31 (54)
129 KOG2979|consensus 54.2 7 0.00015 34.9 1.4 42 157-211 177-218 (262)
130 PLN02436 cellulose synthase A 51.8 12 0.00026 39.6 2.9 52 157-217 37-89 (1094)
131 COG5627 MMS21 DNA repair prote 51.4 7.1 0.00015 34.6 0.9 43 156-211 189-231 (275)
132 PF13719 zinc_ribbon_5: zinc-r 50.6 7.2 0.00016 24.2 0.7 33 158-192 4-36 (37)
133 KOG3113|consensus 50.3 12 0.00027 33.5 2.3 47 157-217 112-158 (293)
134 PF10571 UPF0547: Uncharacteri 49.8 9.4 0.0002 22.2 1.0 10 159-168 3-12 (26)
135 KOG3579|consensus 49.5 7 0.00015 35.6 0.7 38 157-203 269-306 (352)
136 KOG0825|consensus 49.1 14 0.00029 38.2 2.6 54 155-214 95-151 (1134)
137 PLN02638 cellulose synthase A 47.2 17 0.00036 38.7 3.0 52 157-217 18-70 (1079)
138 COG3492 Uncharacterized protei 47.1 12 0.00025 28.5 1.4 12 191-202 43-54 (104)
139 TIGR00622 ssl1 transcription f 46.8 19 0.00042 28.2 2.7 57 155-214 54-111 (112)
140 smart00249 PHD PHD zinc finger 46.1 12 0.00025 22.9 1.1 14 185-198 18-31 (47)
141 KOG3842|consensus 44.9 20 0.00043 33.3 2.8 62 155-216 340-413 (429)
142 KOG2068|consensus 44.8 16 0.00036 33.7 2.3 50 157-218 250-299 (327)
143 KOG1609|consensus 44.3 11 0.00023 33.3 1.0 52 157-217 79-134 (323)
144 KOG3005|consensus 42.8 28 0.00061 31.4 3.4 53 156-215 182-241 (276)
145 PLN02195 cellulose synthase A 42.1 26 0.00056 36.9 3.5 52 157-217 7-59 (977)
146 smart00647 IBR In Between Ring 41.8 5.6 0.00012 26.6 -0.9 19 181-199 39-58 (64)
147 PRK05978 hypothetical protein; 40.8 13 0.00027 30.6 0.8 25 187-219 41-65 (148)
148 PRK11827 hypothetical protein; 40.7 11 0.00024 26.3 0.4 19 197-218 2-20 (60)
149 PF13832 zf-HC5HC2H_2: PHD-zin 40.4 22 0.00047 26.8 2.0 32 157-198 56-87 (110)
150 cd00350 rubredoxin_like Rubred 39.9 12 0.00026 22.6 0.4 20 187-215 7-26 (33)
151 PLN02915 cellulose synthase A 39.4 26 0.00056 37.1 3.0 53 156-217 15-68 (1044)
152 KOG1819|consensus 38.5 29 0.00063 34.2 3.0 40 148-196 893-932 (990)
153 PF14169 YdjO: Cold-inducible 38.3 17 0.00036 25.4 1.0 18 199-216 29-49 (59)
154 PF00412 LIM: LIM domain; Int 38.0 9.9 0.00021 24.9 -0.2 36 159-216 1-36 (58)
155 PLN02400 cellulose synthase 37.3 22 0.00047 37.8 2.1 52 157-217 37-89 (1085)
156 cd00065 FYVE FYVE domain; Zinc 35.0 35 0.00075 22.4 2.2 36 157-201 3-38 (57)
157 COG3813 Uncharacterized protei 34.4 41 0.0009 24.6 2.5 25 187-216 27-51 (84)
158 PF05605 zf-Di19: Drought indu 34.0 23 0.00051 23.4 1.2 10 206-215 31-40 (54)
159 KOG1729|consensus 33.5 11 0.00024 34.2 -0.7 62 146-216 158-224 (288)
160 PF15616 TerY-C: TerY-C metal 33.5 16 0.00034 29.5 0.3 41 157-219 78-118 (131)
161 PF13771 zf-HC5HC2H: PHD-like 31.9 27 0.00058 25.1 1.3 32 157-198 37-68 (90)
162 PF02318 FYVE_2: FYVE-type zin 31.0 25 0.00054 27.2 1.1 50 155-214 53-102 (118)
163 PF09943 DUF2175: Uncharacteri 31.0 36 0.00078 26.3 1.9 33 158-201 4-36 (101)
164 KOG1100|consensus 30.4 16 0.00034 31.5 -0.2 37 159-215 161-198 (207)
165 TIGR00627 tfb4 transcription f 30.1 33 0.00073 30.9 1.9 11 206-216 269-279 (279)
166 COG4357 Zinc finger domain con 29.8 41 0.00089 25.9 2.0 55 158-217 37-91 (105)
167 PF00628 PHD: PHD-finger; Int 28.9 16 0.00036 23.5 -0.3 45 159-213 2-49 (51)
168 PF06906 DUF1272: Protein of u 27.2 86 0.0019 21.7 3.0 45 158-216 7-51 (57)
169 KOG4185|consensus 26.9 13 0.00028 32.9 -1.4 50 157-214 208-264 (296)
170 KOG4443|consensus 25.4 36 0.00078 34.3 1.3 30 185-214 39-70 (694)
171 KOG0824|consensus 25.0 26 0.00057 32.1 0.2 46 155-215 104-149 (324)
172 KOG2041|consensus 23.9 45 0.00097 34.4 1.6 27 185-218 1160-1186(1189)
173 PF10497 zf-4CXXC_R1: Zinc-fin 23.5 68 0.0015 24.6 2.3 27 188-214 37-69 (105)
174 KOG4021|consensus 23.4 36 0.00078 29.5 0.8 22 193-216 97-118 (239)
175 COG1545 Predicted nucleic-acid 23.4 46 0.001 26.7 1.4 20 185-215 33-52 (140)
176 PF04710 Pellino: Pellino; In 23.4 27 0.00059 33.2 0.0 62 156-217 328-401 (416)
177 PF07975 C1_4: TFIIH C1-like d 23.2 53 0.0011 22.2 1.4 49 159-213 2-50 (51)
178 PF06937 EURL: EURL protein; 23.2 80 0.0017 28.6 2.9 45 157-211 31-75 (285)
179 smart00734 ZnF_Rad18 Rad18-lik 23.1 40 0.00086 19.3 0.7 10 207-216 2-11 (26)
180 PF14311 DUF4379: Domain of un 22.5 49 0.0011 21.9 1.2 22 187-212 34-55 (55)
181 PF11290 DUF3090: Protein of u 22.2 50 0.0011 27.8 1.3 14 204-217 152-165 (171)
182 PF09723 Zn-ribbon_8: Zinc rib 21.3 14 0.0003 23.6 -1.7 23 187-214 11-34 (42)
183 COG5595 Zn-ribbon-containing, 20.6 45 0.00097 29.0 0.8 16 205-220 217-232 (256)
184 KOG2807|consensus 20.3 94 0.002 29.0 2.8 48 155-215 329-376 (378)
185 KOG1701|consensus 20.3 11 0.00023 36.1 -3.3 27 157-196 335-361 (468)
No 1
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.89 E-value=7.9e-24 Score=156.89 Aligned_cols=82 Identities=68% Similarity=1.609 Sum_probs=76.8
Q ss_pred Cccccccccceeccc-CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 139 NPMVGWTGVATWRWV-ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~-~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
+.+++|++|+.|.|+ ..++.|.||+..|+..+..++.||+++|++++.|+|.||.+||.+||.+++.+..||+||++|+
T Consensus 3 v~i~~w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 3 VKIKEWHAVATWKWDVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eEEEEEEEEEEEEEecCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 568899999999996 5799999999999999999999999999999999999999999999998556899999999999
Q ss_pred ccC
Q psy14827 218 FKE 220 (220)
Q Consensus 218 ~~~ 220 (220)
|||
T Consensus 83 ~k~ 85 (85)
T PF12861_consen 83 FKE 85 (85)
T ss_pred eCC
Confidence 997
No 2
>KOG1493|consensus
Probab=99.85 E-value=1.5e-22 Score=146.27 Aligned_cols=82 Identities=63% Similarity=1.484 Sum_probs=78.2
Q ss_pred CccccccccceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 139 NPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
+.++++++++.|.|+..++.|.||..+|+..|.+|++|+|++|++++.|.|.||.+||.+|+...++...||+||++|.|
T Consensus 3 vki~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 3 VKIKRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred eEEEEEEEEEEEEEcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 46788999999999999999999999999999999999999999999999999999999999887778999999999999
Q ss_pred cC
Q psy14827 219 KE 220 (220)
Q Consensus 219 ~~ 220 (220)
+|
T Consensus 83 ~e 84 (84)
T KOG1493|consen 83 KE 84 (84)
T ss_pred cC
Confidence 97
No 3
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.85 E-value=5.2e-22 Score=144.63 Aligned_cols=80 Identities=44% Similarity=1.165 Sum_probs=76.7
Q ss_pred CCccccccccceecccCCCcccccccccccccCCCCCC---CCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 138 FNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKL---PGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~---p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
++++++|++++.|+|+...+.|+||...|.+.|++|+. |+++++++++.|+|.||.+||.+||.+ +..||+||+
T Consensus 2 kvkIkkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T---k~~CPld~q 78 (88)
T COG5194 2 KVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT---KGVCPLDRQ 78 (88)
T ss_pred ceEeeeEeEEEEEecccccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh---CCCCCCCCc
Confidence 57889999999999999999999999999999999998 899999999999999999999999999 999999999
Q ss_pred cccccC
Q psy14827 215 EWKFKE 220 (220)
Q Consensus 215 e~~~~~ 220 (220)
+|.|+.
T Consensus 79 ~w~~~~ 84 (88)
T COG5194 79 TWVLAD 84 (88)
T ss_pred eeEEec
Confidence 999863
No 4
>KOG2930|consensus
Probab=99.81 E-value=4.6e-21 Score=145.93 Aligned_cols=82 Identities=35% Similarity=1.002 Sum_probs=77.6
Q ss_pred CCCCCccccccccceecccCCCcccccccccccccCCCCCCC----CCCCCceecCCCCcchHHHHHHHHHhCCCCCCCC
Q psy14827 135 ATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLP----GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCP 210 (220)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p----~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCP 210 (220)
.+++|++++|.++++|.|+...+.|+||...+.+.|++|+.. .++|.++|+.|+|.||.+||.+||++ +..||
T Consensus 25 ~~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt---r~vCP 101 (114)
T KOG2930|consen 25 GKKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT---RNVCP 101 (114)
T ss_pred CCcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh---cCcCC
Confidence 367899999999999999999999999999999999999876 46789999999999999999999999 99999
Q ss_pred CcCcccccc
Q psy14827 211 MCRQEWKFK 219 (220)
Q Consensus 211 vCR~e~~~~ 219 (220)
+|.++|.|+
T Consensus 102 Ldn~eW~~q 110 (114)
T KOG2930|consen 102 LDNKEWVFQ 110 (114)
T ss_pred CcCcceeEe
Confidence 999999997
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.80 E-value=1.5e-20 Score=136.19 Aligned_cols=73 Identities=47% Similarity=1.264 Sum_probs=66.7
Q ss_pred CCccccccccceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcC
Q psy14827 138 FNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR 213 (220)
+|++++|.+++.|.|+..++.|+||+++|.+.+.+++.++++++++++.|||.||.+||..||.. +.+||+||
T Consensus 1 ~~~i~~~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR 73 (73)
T PF12678_consen 1 KFKIKKWNAVALWSWDIADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ---NNTCPLCR 73 (73)
T ss_dssp SEEEEEEEEEEEEEESSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT---SSB-TTSS
T ss_pred CeEEEEEEEEEEEeecCcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc---CCcCCCCC
Confidence 36789999999999999999999999999999999999988899999999999999999999999 88999998
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.50 E-value=7.8e-15 Score=95.82 Aligned_cols=44 Identities=43% Similarity=0.978 Sum_probs=36.0
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcC
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR 213 (220)
+.|+||+++|... ..++.+.|||+||.+||..|++. +.+||+||
T Consensus 1 d~C~IC~~~~~~~----------~~~~~l~C~H~fh~~Ci~~~~~~---~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDG----------EKVVKLPCGHVFHRSCIKEWLKR---NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTT----------SCEEEETTSEEEEHHHHHHHHHH---SSB-TTTH
T ss_pred CCCcCCChhhcCC----------CeEEEccCCCeeCHHHHHHHHHh---CCcCCccC
Confidence 3699999999762 24555569999999999999999 88999997
No 7
>KOG0317|consensus
Probab=99.45 E-value=1e-14 Score=129.01 Aligned_cols=47 Identities=28% Similarity=0.849 Sum_probs=41.9
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.+..|.||||...+ |..++ |||+|||.||..|+.. +.+||+||+.+.
T Consensus 238 a~~kC~LCLe~~~~------------pSaTp-CGHiFCWsCI~~w~~e---k~eCPlCR~~~~ 284 (293)
T KOG0317|consen 238 ATRKCSLCLENRSN------------PSATP-CGHIFCWSCILEWCSE---KAECPLCREKFQ 284 (293)
T ss_pred CCCceEEEecCCCC------------CCcCc-CcchHHHHHHHHHHcc---ccCCCcccccCC
Confidence 45799999999866 67777 9999999999999999 999999999764
No 8
>KOG4628|consensus
Probab=99.34 E-value=3.7e-13 Score=122.71 Aligned_cols=47 Identities=36% Similarity=0.811 Sum_probs=39.6
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
.|+||||+|+.++..+. +.|+|.||..||++||..+ +..||+|+++.
T Consensus 231 ~CaIClEdY~~GdklRi----------LPC~H~FH~~CIDpWL~~~--r~~CPvCK~di 277 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRI----------LPCSHKFHVNCIDPWLTQT--RTFCPVCKRDI 277 (348)
T ss_pred eEEEeecccccCCeeeE----------ecCCCchhhccchhhHhhc--CccCCCCCCcC
Confidence 89999999999644433 4499999999999999983 67799999864
No 9
>KOG0823|consensus
Probab=99.26 E-value=2.8e-12 Score=110.63 Aligned_cols=52 Identities=29% Similarity=0.700 Sum_probs=45.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
..-+|.|||+.-++ |++++ |||+|||.||-+||....++..||||+.++.-.
T Consensus 46 ~~FdCNICLd~akd------------PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 46 GFFDCNICLDLAKD------------PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CceeeeeeccccCC------------CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 44689999999988 89998 999999999999999877789999999987543
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.26 E-value=3.3e-12 Score=111.56 Aligned_cols=57 Identities=26% Similarity=0.586 Sum_probs=43.0
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
.+..|+||++.+.+.... ...-.+++.|+|+||..||..|++. +.+||+||.++.+.
T Consensus 173 ~~~eC~ICle~~~~~~~~-----~~~~~vl~~C~H~FC~~CI~~Wl~~---~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIK-----NMYFGILSNCNHVFCIECIDIWKKE---KNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccc-----cccceecCCCCCcccHHHHHHHHhc---CCCCCCCCCEeeEE
Confidence 357899999998662100 0001345569999999999999998 99999999988653
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.10 E-value=7.7e-11 Score=99.81 Aligned_cols=51 Identities=31% Similarity=0.699 Sum_probs=40.4
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-------------CCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-------------QVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-------------~~~~sCPvCR~e~~~ 218 (220)
.+-.|+||++.+++ |+++. |||+||+.||..|+... .+...||+||.++..
T Consensus 17 ~~~~CpICld~~~d------------PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRD------------PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCC------------cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34689999999977 66655 99999999999998631 125689999998753
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.09 E-value=5.4e-11 Score=75.80 Aligned_cols=39 Identities=38% Similarity=0.960 Sum_probs=33.9
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
|+||++.+.+ +++.+.|||+||..||.+|++. +..||+|
T Consensus 1 C~iC~~~~~~------------~~~~~~CGH~fC~~C~~~~~~~---~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD------------PVVVTPCGHSFCKECIEKYLEK---NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS------------EEEECTTSEEEEHHHHHHHHHC---TSB-TTT
T ss_pred CCCCCCcccC------------cCEECCCCCchhHHHHHHHHHC---cCCCcCC
Confidence 8999999977 7777889999999999999999 8999998
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.08 E-value=1.2e-10 Score=73.94 Aligned_cols=45 Identities=42% Similarity=0.938 Sum_probs=37.7
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
.|+||++.+.. +..++.|||.||..|+..|++. ++..||+||..+
T Consensus 1 ~C~iC~~~~~~------------~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE------------PVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC------------ceEecCCCChhcHHHHHHHHHh--CcCCCCCCCCcC
Confidence 49999999844 5666669999999999999987 377899999864
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.2e-10 Score=106.64 Aligned_cols=61 Identities=34% Similarity=0.732 Sum_probs=44.9
Q ss_pred CCCcccccccccccccCCCCCCC--CCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLP--GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p--~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
..|..|+||++++-.... -++| .+..|-.++ |||+||.+|+..|+.. ..+||+||.++-|.
T Consensus 285 n~D~~C~ICmde~~h~~~-~~~~~~~~~~pKrLp-CGHilHl~CLknW~ER---qQTCPICr~p~ifd 347 (491)
T COG5243 285 NSDRTCTICMDEMFHPDH-EPLPRGLDMTPKRLP-CGHILHLHCLKNWLER---QQTCPICRRPVIFD 347 (491)
T ss_pred CCCCeEEEecccccCCCC-ccCcccccCCccccc-ccceeeHHHHHHHHHh---ccCCCcccCccccc
Confidence 456899999999544221 1122 122344444 9999999999999999 99999999998775
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.00 E-value=2.6e-10 Score=76.34 Aligned_cols=46 Identities=33% Similarity=0.727 Sum_probs=37.8
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
+..|.||++...+ .+...|||. |+..|+..|++. ...||+||++++
T Consensus 2 ~~~C~iC~~~~~~-------------~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD-------------VVLLPCGHLCFCEECAERLLKR---KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS-------------EEEETTCEEEEEHHHHHHHHHT---TSBBTTTTBB-S
T ss_pred cCCCccCCccCCc-------------eEEeCCCChHHHHHHhHHhccc---CCCCCcCChhhc
Confidence 3679999999755 444459999 999999999998 999999999875
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.96 E-value=5.1e-10 Score=96.45 Aligned_cols=61 Identities=28% Similarity=0.654 Sum_probs=43.4
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPvCR~e~~~~ 219 (220)
.+..|+||||.+-+.. .+++--..++..|+|.||..||..|.+.. .....||+||..+.|.
T Consensus 169 kE~eCgICmE~I~eK~----~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 169 KEKECGICYEVVYSKR----LENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCCCccCcccccccc----ccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 4578999999975521 11111134566799999999999999862 1245699999998875
No 17
>KOG0320|consensus
Probab=98.95 E-value=3.3e-10 Score=94.44 Aligned_cols=49 Identities=29% Similarity=0.603 Sum_probs=41.5
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
...|+|||+.|... ..+.++|||+||..||..-++. ...||+||..+.-
T Consensus 131 ~~~CPiCl~~~sek-----------~~vsTkCGHvFC~~Cik~alk~---~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 131 TYKCPICLDSVSEK-----------VPVSTKCGHVFCSQCIKDALKN---TNKCPTCRKKITH 179 (187)
T ss_pred ccCCCceecchhhc-----------cccccccchhHHHHHHHHHHHh---CCCCCCcccccch
Confidence 36899999999772 3366789999999999999999 8999999976543
No 18
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.5e-10 Score=100.49 Aligned_cols=48 Identities=38% Similarity=0.816 Sum_probs=39.6
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
-.|+|||++|.-+ + ..+.+.|.|.||..||.+|+... +..||+||.++
T Consensus 324 veCaICms~fiK~--------d--~~~vlPC~H~FH~~Cv~kW~~~y--~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKN--------D--RLRVLPCDHRFHVGCVDKWLLGY--SNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhccc--------c--eEEEeccCceechhHHHHHHhhh--cccCCccCCCC
Confidence 5799999999542 2 36666699999999999999842 88999999875
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.85 E-value=1.5e-09 Score=70.66 Aligned_cols=41 Identities=29% Similarity=0.771 Sum_probs=30.0
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCC-CCCCCc
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVH-HQCPMC 212 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~-~sCPvC 212 (220)
|+||++.|++ |+.+ .|||+|+..||..|.+...+. ..||+|
T Consensus 1 CpiC~~~~~~------------Pv~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD------------PVSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS------------EEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC------------cccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999987 5554 599999999999999874322 689998
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.83 E-value=2e-09 Score=68.78 Aligned_cols=41 Identities=39% Similarity=1.022 Sum_probs=35.4
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
|+||++.+.+ +..++.|||.||..||..|++. .+...||+|
T Consensus 1 C~iC~~~~~~------------~~~~~~C~H~fC~~C~~~~~~~-~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED------------PVILLPCGHSFCRDCLRKWLEN-SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS------------EEEETTTSEEEEHHHHHHHHHH-TSSSBTTTT
T ss_pred CCcCCccccC------------CCEEecCCCcchHHHHHHHHHh-cCCccCCcC
Confidence 8999999977 4557779999999999999994 348889998
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.82 E-value=3.6e-09 Score=73.10 Aligned_cols=45 Identities=24% Similarity=0.453 Sum_probs=39.4
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
.|+||++.|++ |++. .|||+|+..||..|++. +..||+|+.++..
T Consensus 3 ~Cpi~~~~~~~------------Pv~~-~~G~v~~~~~i~~~~~~---~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKD------------PVIL-PSGQTYERRAIEKWLLS---HGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCC------------CEEC-CCCCEEeHHHHHHHHHH---CCCCCCCcCCCCh
Confidence 59999999977 6555 59999999999999998 8899999998754
No 22
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.4e-09 Score=94.15 Aligned_cols=53 Identities=26% Similarity=0.589 Sum_probs=43.3
Q ss_pred eecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH-HHHhCCCCCC-CCCcCccccc
Q psy14827 149 TWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK-WLNSQQVHHQ-CPMCRQEWKF 218 (220)
Q Consensus 149 ~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~-WL~~~~~~~s-CPvCR~e~~~ 218 (220)
.++. ..+.+|+||++.... |+.++ |||+||+.||.. |-.. +.. ||+||+...-
T Consensus 209 pfip-~~d~kC~lC~e~~~~------------ps~t~-CgHlFC~~Cl~~~~t~~---k~~~CplCRak~~p 263 (271)
T COG5574 209 PFIP-LADYKCFLCLEEPEV------------PSCTP-CGHLFCLSCLLISWTKK---KYEFCPLCRAKVYP 263 (271)
T ss_pred Cccc-ccccceeeeecccCC------------ccccc-ccchhhHHHHHHHHHhh---ccccCchhhhhccc
Confidence 3444 567899999999866 67777 999999999999 9888 666 9999996543
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.73 E-value=8.8e-09 Score=67.30 Aligned_cols=44 Identities=27% Similarity=0.696 Sum_probs=35.7
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
.|.||++.|.+ ..+..++.|||+|+..||..+... ...||+||+
T Consensus 1 ~C~~C~~~~~~----------~~~~~l~~CgH~~C~~C~~~~~~~---~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE----------ERRPRLTSCGHIFCEKCLKKLKGK---SVKCPICRK 44 (44)
T ss_pred CCcCcCccccC----------CCCeEEcccCCHHHHHHHHhhcCC---CCCCcCCCC
Confidence 49999999932 224666779999999999999844 789999985
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.72 E-value=1.1e-08 Score=62.54 Aligned_cols=39 Identities=41% Similarity=0.928 Sum_probs=31.0
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
|+||++.... .+.+.|||.||..||..|+.. ++..||+|
T Consensus 1 C~iC~~~~~~-------------~~~~~C~H~~c~~C~~~~~~~--~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD-------------PVVLPCGHTFCRSCIRKWLKS--GNNTCPIC 39 (39)
T ss_pred CCcCccCCCC-------------cEEecCCChHHHHHHHHHHHh--CcCCCCCC
Confidence 7899888433 344459999999999999983 27789998
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=2e-08 Score=93.72 Aligned_cols=45 Identities=38% Similarity=0.863 Sum_probs=39.0
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||++.|.+ |++ +.|||.||..||..|+.. ...||+||.++.
T Consensus 27 l~C~IC~d~~~~------------Pvi-tpCgH~FCs~CI~~~l~~---~~~CP~Cr~~~~ 71 (397)
T TIGR00599 27 LRCHICKDFFDV------------PVL-TSCSHTFCSLCIRRCLSN---QPKCPLCRAEDQ 71 (397)
T ss_pred cCCCcCchhhhC------------ccC-CCCCCchhHHHHHHHHhC---CCCCCCCCCccc
Confidence 589999999976 554 459999999999999998 779999999764
No 26
>KOG0802|consensus
Probab=98.59 E-value=2e-08 Score=97.09 Aligned_cols=50 Identities=28% Similarity=0.696 Sum_probs=40.0
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
.++.|+||+|++..+.. .....+.|||+||..|+..|++. ..+||+||..
T Consensus 290 ~~~~C~IC~e~l~~~~~--------~~~~rL~C~Hifh~~CL~~W~er---~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHN--------ITPKRLPCGHIFHDSCLRSWFER---QQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccc--------cccceeecccchHHHHHHHHHHH---hCcCCcchhh
Confidence 46899999999977311 11233349999999999999999 9999999983
No 27
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.49 E-value=8.2e-08 Score=85.80 Aligned_cols=46 Identities=30% Similarity=0.611 Sum_probs=40.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
..|-||-+-|.. |..++ |||.||.-||...|.+ ++.||+||.++.|
T Consensus 26 lrC~IC~~~i~i------------p~~Tt-CgHtFCslCIR~hL~~---qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISI------------PCETT-CGHTFCSLCIRRHLGT---QPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeec------------ceecc-cccchhHHHHHHHhcC---CCCCccccccHHh
Confidence 469999999977 45554 9999999999999999 9999999998765
No 28
>KOG2164|consensus
Probab=98.49 E-value=6.3e-08 Score=91.81 Aligned_cols=51 Identities=31% Similarity=0.651 Sum_probs=41.2
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--CCCCCCCCcCcccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--QVHHQCPMCRQEWKFK 219 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~~~~sCPvCR~e~~~~ 219 (220)
+..|+|||+.... |..+. |||+||+.||..++... .+-..||+||..+..+
T Consensus 186 ~~~CPICL~~~~~------------p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSV------------PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCc------------ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 6789999999855 55555 99999999999999772 2467899999877553
No 29
>KOG0287|consensus
Probab=98.48 E-value=9.3e-08 Score=86.95 Aligned_cols=43 Identities=42% Similarity=0.835 Sum_probs=39.2
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
.|.||.+-|.. |+.++ |||.||.-||+.+|.. ++.||.|+.++
T Consensus 25 RC~IC~eyf~i------------p~itp-CsHtfCSlCIR~~L~~---~p~CP~C~~~~ 67 (442)
T KOG0287|consen 25 RCGICFEYFNI------------PMITP-CSHTFCSLCIRKFLSY---KPQCPTCCVTV 67 (442)
T ss_pred HHhHHHHHhcC------------ceecc-ccchHHHHHHHHHhcc---CCCCCceeccc
Confidence 59999999977 66666 9999999999999999 99999999865
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.43 E-value=1.6e-07 Score=61.52 Aligned_cols=42 Identities=29% Similarity=0.729 Sum_probs=22.7
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-CCCCCCC
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-QVHHQCP 210 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-~~~~sCP 210 (220)
|+||+| |.+ ++.+.+++.|||+|+.+||..++... .+...||
T Consensus 1 CpIc~e-~~~---------~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FST---------EENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----T---------TSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccC---------CCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 855 23345555699999999999999862 1355666
No 31
>KOG1734|consensus
Probab=98.42 E-value=5.3e-08 Score=86.14 Aligned_cols=62 Identities=24% Similarity=0.570 Sum_probs=44.7
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
.++..|+||-..+.+...+ .+--..+-.+.|+|+||..||..|... ..+++||.|+..++.|
T Consensus 222 l~d~vCaVCg~~~~~s~~e---egvienty~LsCnHvFHEfCIrGWciv-GKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDE---EGVIENTYKLSCNHVFHEFCIRGWCIV-GKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecch---hhhhhhheeeecccchHHHhhhhheee-cCCCCCchHHHHhhHh
Confidence 3567899999988763210 000013455679999999999999976 4589999999877654
No 32
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.37 E-value=1.5e-07 Score=94.48 Aligned_cols=58 Identities=34% Similarity=0.917 Sum_probs=47.2
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
.-+.||||...+.. .++.+|..-| +.|+|-||..|+-+|++. .++.+||+||.++-|.
T Consensus 1468 G~eECaICYsvL~~--vdr~lPskrC----~TCknKFH~~CLyKWf~S-s~~s~CPlCRseitfv 1525 (1525)
T COG5219 1468 GHEECAICYSVLDM--VDRSLPSKRC----ATCKNKFHTRCLYKWFAS-SARSNCPLCRSEITFV 1525 (1525)
T ss_pred CcchhhHHHHHHHH--HhccCCcccc----chhhhhhhHHHHHHHHHh-cCCCCCCccccccccC
Confidence 34789999988753 3566774433 449999999999999998 6799999999999884
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.24 E-value=2.2e-07 Score=66.73 Aligned_cols=55 Identities=27% Similarity=0.652 Sum_probs=26.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceec---CCCCcchHHHHHHHHHhCC-----C---CCCCCCcCcccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWG---QCSHCFHIHCIMKWLNSQQ-----V---HHQCPMCRQEWKFK 219 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~---~CgHvFH~~CI~~WL~~~~-----~---~~sCPvCR~e~~~~ 219 (220)
..|.||+..+.+ ++..|.++- .|++.||..|+..||+... . ...||.|+.++..+
T Consensus 3 ~~C~IC~~~~~~--------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 3 LECGICYSYRLD--------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp -S-SSS--SS-T--------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCcCCcEecC--------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 579999998753 122233332 6999999999999998521 1 23599999987654
No 34
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.15 E-value=1.8e-06 Score=57.93 Aligned_cols=43 Identities=30% Similarity=0.813 Sum_probs=31.7
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCC-----CcchHHHHHHHHHhCCCCCCCCCcC
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCS-----HCFHIHCIMKWLNSQQVHHQCPMCR 213 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg-----HvFH~~CI~~WL~~~~~~~sCPvCR 213 (220)
|-||++...+ +.+++.+ |. |+||..|+..|+.. .++.+||+|+
T Consensus 2 CrIC~~~~~~----------~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~-~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDE----------GDPLVSP-CRCKGSLKYVHQECLERWINE-SGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCC----------CCeeEec-cccCCchhHHHHHHHHHHHHH-cCCCcCCCCC
Confidence 8999982222 3345444 75 99999999999987 3466999995
No 35
>KOG0804|consensus
Probab=98.11 E-value=8.1e-07 Score=83.26 Aligned_cols=45 Identities=36% Similarity=0.887 Sum_probs=36.4
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
-.+|+||||.+... -..+++..|.|.||..|+..|-.. +|||||.
T Consensus 175 LPTCpVCLERMD~s---------~~gi~t~~c~Hsfh~~cl~~w~~~-----scpvcR~ 219 (493)
T KOG0804|consen 175 LPTCPVCLERMDSS---------TTGILTILCNHSFHCSCLMKWWDS-----SCPVCRY 219 (493)
T ss_pred CCCcchhHhhcCcc---------ccceeeeecccccchHHHhhcccC-----cChhhhh
Confidence 36899999999762 124555569999999999999766 8999996
No 36
>KOG2177|consensus
Probab=98.08 E-value=1.4e-06 Score=73.70 Aligned_cols=44 Identities=34% Similarity=0.749 Sum_probs=37.4
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
+.-.|+||++.|.. | .++.|||.||..||..++.. ...||.||.
T Consensus 12 ~~~~C~iC~~~~~~------------p-~~l~C~H~~c~~C~~~~~~~---~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFRE------------P-VLLPCGHNFCRACLTRSWEG---PLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhc------------C-ccccccchHhHHHHHHhcCC---CcCCcccCC
Confidence 34689999999987 5 55569999999999999884 789999993
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.08 E-value=2.2e-06 Score=61.74 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=36.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
-.|+|+.+-|.+ |+++. +||+|...||..|+.. +..+||+|++.+..
T Consensus 5 f~CpIt~~lM~d------------PVi~~-~G~tyer~~I~~~l~~--~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 5 FLCPITGELMRD------------PVILP-SGHTYERSAIERWLEQ--NGGTDPFTRQPLSE 51 (73)
T ss_dssp GB-TTTSSB-SS------------EEEET-TSEEEEHHHHHHHHCT--TSSB-TTT-SB-SG
T ss_pred cCCcCcCcHhhC------------ceeCC-cCCEEcHHHHHHHHHc--CCCCCCCCCCcCCc
Confidence 579999999988 67766 9999999999999988 48999999987653
No 38
>KOG0828|consensus
Probab=98.03 E-value=2.2e-06 Score=81.34 Aligned_cols=60 Identities=22% Similarity=0.645 Sum_probs=39.7
Q ss_pred CCcccccccccccccCCCCC-CCCCCC---CceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCK-LPGDDC---PLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~-~p~~~~---~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
...+|+||+.+++.-...-. ++.... --..+.|.|+||..|+..|...- +-.||+||.++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y--kl~CPvCR~pL 633 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY--KLICPVCRCPL 633 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh--cccCCccCCCC
Confidence 34689999999864211110 110000 12334699999999999999951 66999999875
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.01 E-value=8.9e-07 Score=62.63 Aligned_cols=43 Identities=33% Similarity=0.787 Sum_probs=22.8
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
-.|.+|.+-++. |+.++.|.|+||+.||.+-+.. .||+|+.+-
T Consensus 8 LrCs~C~~~l~~------------pv~l~~CeH~fCs~Ci~~~~~~-----~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKE------------PVCLGGCEHIFCSSCIRDCIGS-----ECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-------------B---SSS--B-TTTGGGGTTT-----B-SSS--B-
T ss_pred cCCcHHHHHhcC------------CceeccCccHHHHHHhHHhcCC-----CCCCcCChH
Confidence 369999999977 7888889999999999885444 599999763
No 40
>KOG0825|consensus
Probab=97.99 E-value=1.6e-06 Score=85.79 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=41.0
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|++||..|.++.+..+.+ |+|+||.+||..|.+. ..+||+||.+|.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~----------c~H~FC~~Ci~sWsR~---aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH----------TAHYFCEECVGSWSRC---AQTCPVDRGEFG 171 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc----------cccccHHHHhhhhhhh---cccCchhhhhhh
Confidence 67999999998864444444 9999999999999999 999999999874
No 41
>KOG0978|consensus
Probab=97.76 E-value=1e-05 Score=80.04 Aligned_cols=46 Identities=22% Similarity=0.723 Sum_probs=39.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
-.|++|-..+++ .+..+|||+||..||..-+... ...||.|...|.
T Consensus 644 LkCs~Cn~R~Kd-------------~vI~kC~H~FC~~Cvq~r~etR--qRKCP~Cn~aFg 689 (698)
T KOG0978|consen 644 LKCSVCNTRWKD-------------AVITKCGHVFCEECVQTRYETR--QRKCPKCNAAFG 689 (698)
T ss_pred eeCCCccCchhh-------------HHHHhcchHHHHHHHHHHHHHh--cCCCCCCCCCCC
Confidence 479999999887 4555699999999999999874 788999999874
No 42
>KOG0311|consensus
Probab=97.70 E-value=6e-06 Score=75.55 Aligned_cols=47 Identities=32% Similarity=0.696 Sum_probs=39.8
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
+-.|+|||+-++. ...+..|.|-||.+||..-++. ++++||.||+..
T Consensus 43 ~v~c~icl~llk~------------tmttkeClhrfc~~ci~~a~r~--gn~ecptcRk~l 89 (381)
T KOG0311|consen 43 QVICPICLSLLKK------------TMTTKECLHRFCFDCIWKALRS--GNNECPTCRKKL 89 (381)
T ss_pred hhccHHHHHHHHh------------hcccHHHHHHHHHHHHHHHHHh--cCCCCchHHhhc
Confidence 3579999999976 4555679999999999999987 699999999854
No 43
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.63 E-value=2.2e-05 Score=54.31 Aligned_cols=43 Identities=26% Similarity=0.628 Sum_probs=31.6
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM 211 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv 211 (220)
+..|+|.+..|++ |+....|||+|-...|..||+. .+...||+
T Consensus 11 ~~~CPiT~~~~~~------------PV~s~~C~H~fek~aI~~~i~~-~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFED------------PVKSKKCGHTFEKEAILQYIQR-NGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SS------------EEEESSS--EEEHHHHHHHCTT-TS-EE-SC
T ss_pred ccCCCCcCChhhC------------CcCcCCCCCeecHHHHHHHHHh-cCCCCCCC
Confidence 3689999999988 7888889999999999999944 45889999
No 44
>KOG4445|consensus
Probab=97.41 E-value=5.8e-05 Score=68.03 Aligned_cols=55 Identities=29% Similarity=0.754 Sum_probs=42.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh--------------------CCCCCCCCCcCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS--------------------QQVHHQCPMCRQ 214 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~--------------------~~~~~sCPvCR~ 214 (220)
....|.|||--|.++ -....+.|-|.||..|+.++|.. .+....|||||.
T Consensus 114 p~gqCvICLygfa~~----------~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre 183 (368)
T KOG4445|consen 114 PNGQCVICLYGFASS----------PAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRE 183 (368)
T ss_pred CCCceEEEEEeecCC----------CceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhh
Confidence 447899999999773 13555669999999999998863 024678999998
Q ss_pred ccccc
Q psy14827 215 EWKFK 219 (220)
Q Consensus 215 e~~~~ 219 (220)
.+.+.
T Consensus 184 ~i~~e 188 (368)
T KOG4445|consen 184 RIKIE 188 (368)
T ss_pred hcccc
Confidence 87654
No 45
>KOG4172|consensus
Probab=97.39 E-value=5.2e-05 Score=52.15 Aligned_cols=46 Identities=30% Similarity=0.624 Sum_probs=34.5
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
+.|+||+|.-.+ .++-.|||. .|.+|-.+-++. .+..||+||++++
T Consensus 8 dECTICye~pvd-------------sVlYtCGHMCmCy~Cg~rl~~~--~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVD-------------SVLYTCGHMCMCYACGLRLKKA--LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcch-------------HHHHHcchHHhHHHHHHHHHHc--cCCcCcchhhHHH
Confidence 789999887544 344459996 577887766663 3999999999764
No 46
>KOG0297|consensus
Probab=97.36 E-value=7.7e-05 Score=69.75 Aligned_cols=48 Identities=33% Similarity=0.812 Sum_probs=41.3
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.+-.|+||...+.+ |+....|||.||..||..|++. +..||.|+++..
T Consensus 20 ~~l~C~~C~~vl~~------------p~~~~~cgh~fC~~C~~~~~~~---~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 20 ENLLCPICMSVLRD------------PVQTTTCGHRFCAGCLLESLSN---HQKCPVCRQELT 67 (391)
T ss_pred ccccCccccccccC------------CCCCCCCCCcccccccchhhcc---CcCCcccccccc
Confidence 34689999999988 5665569999999999999999 999999988643
No 47
>KOG1039|consensus
Probab=97.35 E-value=0.00013 Score=67.30 Aligned_cols=60 Identities=28% Similarity=0.696 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCC----CCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ----VHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~----~~~sCPvCR~e~~~~ 219 (220)
.+..|.||++.+.+.. .. ...-..++.|.|.||..||..|-...+ -...||.||..-+|.
T Consensus 160 ~~k~CGICme~i~ek~-~~----~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 160 SEKECGICMETINEKA-AS----ERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred ccccceehhhhccccc-hh----hhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 4679999999997732 00 000112356999999999999985421 158999999977764
No 48
>PHA02862 5L protein; Provisional
Probab=97.22 E-value=0.00026 Score=57.71 Aligned_cols=50 Identities=26% Similarity=0.674 Sum_probs=38.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCC---CCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQC---SHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~C---gHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
+.|-||+++-++.. -| ..| -..-|.+|+..|+.. +++..|++|+.+|.++
T Consensus 3 diCWIC~~~~~e~~----~P--------C~C~GS~K~VHq~CL~~WIn~-S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDERN----NF--------CGCNEEYKVVHIKCMQLWINY-SKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCCc----cc--------ccccCcchhHHHHHHHHHHhc-CCCcCccCCCCeEEEE
Confidence 67999999864421 11 123 457899999999976 6799999999999876
No 49
>KOG4265|consensus
Probab=97.19 E-value=0.00026 Score=65.01 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=36.1
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
...|.|||.+-++ ++++.|.|. .|..|...---. .+.||+||+.+.
T Consensus 290 gkeCVIClse~rd-------------t~vLPCRHLCLCs~Ca~~Lr~q---~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRD-------------TVVLPCRHLCLCSGCAKSLRYQ---TNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcc-------------eEEecchhhehhHhHHHHHHHh---hcCCCccccchH
Confidence 4689999999887 445559996 688898765444 788999999763
No 50
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.17 E-value=0.00015 Score=62.10 Aligned_cols=43 Identities=30% Similarity=0.799 Sum_probs=37.6
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
-.|.||..+|+. |+++. |||.||..|...=++. ...|-+|.++
T Consensus 197 F~C~iCKkdy~s------------pvvt~-CGH~FC~~Cai~~y~k---g~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYES------------PVVTE-CGHSFCSLCAIRKYQK---GDECGVCGKA 239 (259)
T ss_pred eeehhchhhccc------------hhhhh-cchhHHHHHHHHHhcc---CCcceecchh
Confidence 379999999987 67776 9999999999888877 8999999764
No 51
>KOG1645|consensus
Probab=97.15 E-value=0.00021 Score=66.71 Aligned_cols=37 Identities=38% Similarity=0.767 Sum_probs=31.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN 201 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~ 201 (220)
..|+|||+.|.- + .++.++.+.|||.|...||..||-
T Consensus 5 ~tcpiclds~~~-------~-g~hr~vsl~cghlFgs~cie~wl~ 41 (463)
T KOG1645|consen 5 TTCPICLDSYTT-------A-GNHRIVSLQCGHLFGSQCIEKWLG 41 (463)
T ss_pred ccCceeeeeeee-------c-CceEEeeecccccccHHHHHHHHh
Confidence 579999999976 2 345688889999999999999994
No 52
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.05 E-value=0.00056 Score=56.53 Aligned_cols=52 Identities=23% Similarity=0.715 Sum_probs=39.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCC---cchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSH---CFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgH---vFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
.+..|-||.++-.+ ....-.|.. .-|.+|+..|+.. ++...|++|+++|.++
T Consensus 7 ~~~~CRIC~~~~~~------------~~~PC~CkGs~k~VH~sCL~rWi~~-s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYDV------------VTNYCNCKNENKIVHKECLEEWINT-SKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCCC------------ccCCcccCCCchHHHHHHHHHHHhc-CCCCcccccCCeEEEE
Confidence 45789999887432 111234666 5699999999987 5789999999998875
No 53
>KOG1785|consensus
Probab=96.90 E-value=0.00025 Score=66.24 Aligned_cols=48 Identities=29% Similarity=0.664 Sum_probs=37.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
=..|-||-|.=++ .-.. .|||..|..|+..|-.. +....||.||.+++
T Consensus 369 FeLCKICaendKd------------vkIE-PCGHLlCt~CLa~WQ~s-d~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAENDKD------------VKIE-PCGHLLCTSCLAAWQDS-DEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccCCC------------cccc-cccchHHHHHHHhhccc-CCCCCCCceeeEec
Confidence 3679999988766 2222 39999999999999865 34789999999865
No 54
>KOG4159|consensus
Probab=96.83 E-value=0.00061 Score=63.96 Aligned_cols=46 Identities=33% Similarity=0.832 Sum_probs=38.7
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
+-.|.||+..+.. |+++ .|||.||..||.+=+.. +..||.||.++.
T Consensus 84 ef~c~vc~~~l~~------------pv~t-pcghs~c~~Cl~r~ld~---~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 84 EFECCVCSRALYP------------PVVT-PCGHSFCLECLDRSLDQ---ETECPLCRDELV 129 (398)
T ss_pred hhhhhhhHhhcCC------------Cccc-cccccccHHHHHHHhcc---CCCCcccccccc
Confidence 3579999888865 6666 59999999999997776 999999998764
No 55
>KOG3970|consensus
Probab=96.71 E-value=0.0014 Score=57.20 Aligned_cols=50 Identities=26% Similarity=0.575 Sum_probs=37.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-----CCCCCCCCcCccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-----QVHHQCPMCRQEW 216 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-----~~~~sCPvCR~e~ 216 (220)
+..|.+|--.+..+ ..+.+.|-|+|||.|+..|-..= -..-.||.|.+++
T Consensus 50 ~pNC~LC~t~La~g-----------dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 50 NPNCRLCNTPLASG-----------DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCceeCCccccC-----------cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 46899998888763 23455599999999999998751 1255799999874
No 56
>KOG1952|consensus
Probab=96.43 E-value=0.0045 Score=62.46 Aligned_cols=51 Identities=31% Similarity=0.694 Sum_probs=36.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC----CCCCCCCCcCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ----QVHHQCPMCRQ 214 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~----~~~~sCPvCR~ 214 (220)
....|.||++.+..- .....-..|-|+||..||..|.+.. +..=.||-|+.
T Consensus 190 ~~yeCmIC~e~I~~t---------~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRT---------APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeecccc---------CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 335899999999762 1122223599999999999999862 12456999984
No 57
>KOG1813|consensus
Probab=96.42 E-value=0.00098 Score=59.98 Aligned_cols=44 Identities=34% Similarity=0.628 Sum_probs=38.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|-||...|.. |+++- |||.||..|...-++. ...|++|.+..
T Consensus 242 f~c~icr~~f~~------------pVvt~-c~h~fc~~ca~~~~qk---~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYR------------PVVTK-CGHYFCEVCALKPYQK---GEKCYVCSQQT 285 (313)
T ss_pred cccccccccccc------------chhhc-CCceeehhhhcccccc---CCcceeccccc
Confidence 569999999987 66665 9999999999988887 89999998753
No 58
>KOG1941|consensus
Probab=96.36 E-value=0.0017 Score=60.60 Aligned_cols=47 Identities=32% Similarity=0.667 Sum_probs=38.1
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcC
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR 213 (220)
-.|..|=+.+-.. +..+..+.|.|+||..|+...|.. .+-.+||-||
T Consensus 366 L~Cg~CGe~~Glk---------~e~LqALpCsHIfH~rCl~e~L~~-n~~rsCP~Cr 412 (518)
T KOG1941|consen 366 LYCGLCGESIGLK---------NERLQALPCSHIFHLRCLQEILEN-NGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhcCC---------cccccccchhHHHHHHHHHHHHHh-CCCCCCccHH
Confidence 5799999998652 224556679999999999999976 4678999999
No 59
>KOG1428|consensus
Probab=96.07 E-value=0.0037 Score=66.20 Aligned_cols=53 Identities=30% Similarity=0.676 Sum_probs=38.7
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-------CCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-------QVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-------~~~~sCPvCR~e~~ 217 (220)
.++.|.||.-+--. ..|-..+.|+|+||..|...-|... -+--+||+|.++++
T Consensus 3485 ~DDmCmICFTE~L~----------AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALS----------AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhC----------CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 46889999766433 2355566699999999999877652 02457999998765
No 60
>PHA03096 p28-like protein; Provisional
Probab=96.02 E-value=0.0044 Score=55.85 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=36.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCC---CCCCCCcCccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQV---HHQCPMCRQEWKF 218 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~---~~sCPvCR~e~~~ 218 (220)
-.|.||++...... +.+.-=..+..|.|.||..||..|-..... .+.||.|+.-..|
T Consensus 179 k~c~ic~e~~~~k~-----~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~ 238 (284)
T PHA03096 179 KICGICLENIKAKY-----IIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVF 238 (284)
T ss_pred hhcccchhhhhhhc-----cccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHH
Confidence 46999999987631 111111233459999999999999976433 4445555544433
No 61
>KOG2660|consensus
Probab=95.95 E-value=0.0022 Score=58.42 Aligned_cols=44 Identities=30% Similarity=0.647 Sum_probs=38.8
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
..|.+|---|.+ +.....|-|.||..||...|.. ...||.|...
T Consensus 16 itC~LC~GYliD------------ATTI~eCLHTFCkSCivk~l~~---~~~CP~C~i~ 59 (331)
T KOG2660|consen 16 ITCRLCGGYLID------------ATTITECLHTFCKSCIVKYLEE---SKYCPTCDIV 59 (331)
T ss_pred eehhhccceeec------------chhHHHHHHHHHHHHHHHHHHH---hccCCcccee
Confidence 589999999977 4566679999999999999999 9999999764
No 62
>KOG2114|consensus
Probab=95.89 E-value=0.0033 Score=63.39 Aligned_cols=43 Identities=30% Similarity=0.793 Sum_probs=35.6
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..+|..|--..+. |.|--.|||.||.+|+. .. ...||-|+.+.
T Consensus 840 ~skCs~C~~~Ldl------------P~VhF~CgHsyHqhC~e---~~---~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDL------------PFVHFLCGHSYHQHCLE---DK---EDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCcccc------------ceeeeecccHHHHHhhc---cC---cccCCccchhh
Confidence 3689999888865 77777799999999998 33 78899998753
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.87 E-value=0.0027 Score=47.69 Aligned_cols=32 Identities=25% Similarity=0.622 Sum_probs=25.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHH
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIM 197 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~ 197 (220)
.+..|++|-..+... +.++.+|||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~~-----------~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS-----------VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc-----------eEEEeCCCeEEeccccc
Confidence 346899999999542 66777799999999975
No 64
>KOG2879|consensus
Probab=95.68 E-value=0.0093 Score=53.37 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=37.9
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.+..|++|-+.=.. |-+.++|||+||-.||..=+.. +-..+||.|..+..
T Consensus 238 ~~~~C~~Cg~~Pti------------P~~~~~C~HiyCY~Ci~ts~~~-~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTI------------PHVIGKCGHIYCYYCIATSRLW-DASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCC------------Ceeeccccceeehhhhhhhhcc-hhhcccCccCCCCc
Confidence 45789999776433 6777889999999999876553 22569999987654
No 65
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.66 E-value=0.0044 Score=41.08 Aligned_cols=43 Identities=28% Similarity=0.748 Sum_probs=27.0
Q ss_pred cccccccccccCCCCCCCCCCCCceec-CCCC---cchHHHHHHHHHhCCCCCCCCCc
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWG-QCSH---CFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~-~CgH---vFH~~CI~~WL~~~~~~~sCPvC 212 (220)
|-||++.-.+. .+++.+ .|+= ..|..|+..|+.. .++..|++|
T Consensus 1 CrIC~~~~~~~----------~~li~pC~C~Gs~~~vH~~CL~~W~~~-~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED----------EPLISPCRCKGSMKYVHRSCLERWIRE-SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS----------S-EE-SSS-SSCCGSEECCHHHHHHHH-HT-SB-TTT
T ss_pred CeEeCCcCCCC----------CceecccccCCCcchhHHHHHHHHHHh-cCCCcCCCC
Confidence 66888887652 133333 3555 7899999999987 347789988
No 66
>KOG0826|consensus
Probab=95.55 E-value=0.0096 Score=54.45 Aligned_cols=46 Identities=20% Similarity=0.498 Sum_probs=38.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
....|+||+..... |.+...-|-|||..||...+.. ...|||=..+
T Consensus 299 ~~~~CpvClk~r~N------------ptvl~vSGyVfCY~Ci~~Yv~~---~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQN------------PTVLEVSGYVFCYPCIFSYVVN---YGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCC------------CceEEecceEEeHHHHHHHHHh---cCCCCccCCc
Confidence 45789999998865 6777768999999999999999 9999985443
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.51 E-value=0.011 Score=39.58 Aligned_cols=48 Identities=23% Similarity=0.550 Sum_probs=22.2
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
|++|.+++..- +.-..--.||+.++..|...=+.. ....||-||++++
T Consensus 1 cp~C~e~~d~~---------d~~~~PC~Cgf~IC~~C~~~i~~~--~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDET---------DKDFYPCECGFQICRFCYHDILEN--EGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CC---------CTT--SSTTS----HHHHHHHTTS--S-SB-TTT--B--
T ss_pred CCCcccccccC---------CCccccCcCCCcHHHHHHHHHHhc--cCCCCCCCCCCCC
Confidence 78999998441 222333469999999997766642 3889999999864
No 68
>KOG1002|consensus
Probab=95.39 E-value=0.0081 Score=58.16 Aligned_cols=49 Identities=27% Similarity=0.644 Sum_probs=37.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh--CCCCCCCCCcCccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS--QQVHHQCPMCRQEW 216 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~--~~~~~sCPvCR~e~ 216 (220)
....|.+|-++-++ .+.. .|.|.||..||..++.. ...+.+||+|-..+
T Consensus 535 ~~~~C~lc~d~aed------------~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAED------------YIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhh------------hHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 34689999998877 4444 49999999999988864 13479999997644
No 69
>KOG1571|consensus
Probab=94.87 E-value=0.013 Score=53.99 Aligned_cols=45 Identities=29% Similarity=0.620 Sum_probs=32.5
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
...+.|.||+++.++ .+...|||+=| |+.--.. .+.||+||+.+.
T Consensus 303 ~~p~lcVVcl~e~~~-------------~~fvpcGh~cc--ct~cs~~----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS-------------AVFVPCGHVCC--CTLCSKH----LPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc-------------eeeecCCcEEE--chHHHhh----CCCCchhHHHHH
Confidence 455899999999877 23344999976 6654333 566999998654
No 70
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.84 E-value=0.013 Score=47.26 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=26.2
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCC------CcchHHHHHHHHHh
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCS------HCFHIHCIMKWLNS 202 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg------HvFH~~CI~~WL~~ 202 (220)
.-.|+||++.+.+ .++ .+.++ || |+||.+|+.+|-+.
T Consensus 26 ~~EC~IC~~~I~~--------~~G-vV~vt-~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDN--------NDG-VVYVT-DGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred Ceeehhhhhhhhc--------CCC-EEEEe-cCCeehHHHHHHHHHHHHHHhh
Confidence 3689999999976 111 22222 44 89999999999544
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.81 E-value=0.025 Score=52.35 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=38.2
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
.+...|.||-+.+.- +.++.|+|..|-.|-.+--.. .....||+||.+|+-
T Consensus 59 Een~~C~ICA~~~TY-------------s~~~PC~H~~CH~Ca~RlRAL-Y~~K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTTY-------------SARYPCGHQICHACAVRLRAL-YMQKGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCceE-------------EEeccCCchHHHHHHHHHHHH-HhccCCCccccccce
Confidence 455789999988755 334459999999998764332 238899999999973
No 72
>KOG3268|consensus
Probab=94.58 E-value=0.037 Score=46.93 Aligned_cols=34 Identities=35% Similarity=0.899 Sum_probs=26.9
Q ss_pred CCCCcchHHHHHHHHHhC----C----CCCCCCCcCcccccc
Q psy14827 186 QCSHCFHIHCIMKWLNSQ----Q----VHHQCPMCRQEWKFK 219 (220)
Q Consensus 186 ~CgHvFH~~CI~~WL~~~----~----~~~sCPvCR~e~~~~ 219 (220)
+||.-||.-|+..||+.= + --..||.|-.++-.|
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 599999999999999851 1 135799999887654
No 73
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.29 E-value=0.03 Score=50.95 Aligned_cols=44 Identities=27% Similarity=0.628 Sum_probs=36.1
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
-.|+.|..-... |..+..|+|.||.+||..-|.. .-..||.|.+
T Consensus 275 LkCplc~~Llrn------------p~kT~cC~~~fc~eci~~al~d--sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN------------PMKTPCCGHTFCDECIGTALLD--SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC------------cccCccccchHHHHHHhhhhhh--ccccCCCccc
Confidence 689999888766 5555669999999999988865 2789999976
No 74
>KOG0309|consensus
Probab=93.90 E-value=0.029 Score=56.36 Aligned_cols=51 Identities=29% Similarity=0.731 Sum_probs=34.6
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM 211 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv 211 (220)
..|+||++.+.. |..|.+.-...-.+-+.|+|+-|..|...|+++ ..+||-
T Consensus 1019 ~~~~~~~~~~~~-C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~---gd~Cps 1069 (1081)
T KOG0309|consen 1019 TQCAICKGFTFQ-CAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT---GDVCPS 1069 (1081)
T ss_pred eeccccccceee-eeeEeeEeeccchhhccccccccHHHHHHHHhc---CCcCCC
Confidence 456677666554 444444322223344559999999999999999 889984
No 75
>KOG2034|consensus
Probab=93.44 E-value=0.039 Score=56.16 Aligned_cols=37 Identities=27% Similarity=0.670 Sum_probs=29.8
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN 201 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~ 201 (220)
..++.|.+|...+-.. |...-.|||.||++||..-..
T Consensus 815 ep~d~C~~C~~~ll~~-----------pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-----------PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcC-----------cceeeeccchHHHHHHHHHHH
Confidence 3568999999998662 566667999999999987654
No 76
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.42 E-value=0.056 Score=50.25 Aligned_cols=31 Identities=29% Similarity=0.878 Sum_probs=26.0
Q ss_pred CCCCcchHHHHHHHHHhC----------CCCCCCCCcCccc
Q psy14827 186 QCSHCFHIHCIMKWLNSQ----------QVHHQCPMCRQEW 216 (220)
Q Consensus 186 ~CgHvFH~~CI~~WL~~~----------~~~~sCPvCR~e~ 216 (220)
.|.-.+|.+|+.+|+..+ .++-.||.||+.|
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 377788999999999764 2788999999976
No 77
>KOG4275|consensus
Probab=93.04 E-value=0.017 Score=52.29 Aligned_cols=41 Identities=32% Similarity=0.662 Sum_probs=30.2
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
+..|+||++.-.+ =+.+.|||. -|..|-.. -..||+||+.+
T Consensus 300 ~~LC~ICmDaP~D-------------CvfLeCGHmVtCt~CGkr-------m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRD-------------CVFLECGHMVTCTKCGKR-------MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcc-------------eEEeecCcEEeehhhccc-------cccCchHHHHH
Confidence 5789999987655 355669996 46677542 45899999854
No 78
>KOG0827|consensus
Probab=92.68 E-value=0.011 Score=55.17 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=39.5
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
...|+||.+.++.. .+ .+-...|||.+|.+||..||.. +.-||-||+++.
T Consensus 196 v~sl~I~~~slK~~-------y~--k~~~~~~g~~~~~~kL~k~L~~---~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQN-------YD--KISAIVCGHIYHHGKLSKWLAT---KRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHH-------HH--HHHHHhhcccchhhHHHHHHHH---HHHhHHHHhhhh
Confidence 46899999999762 00 1223349999999999999999 889999999864
No 79
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.63 E-value=0.075 Score=47.01 Aligned_cols=48 Identities=17% Similarity=0.475 Sum_probs=35.3
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
-.|+|...+|.. ...-+.+..|||||...+|..- .. ...||+|-.+|.
T Consensus 114 ~~CPvt~~~~~~---------~~~fv~l~~cG~V~s~~alke~-k~---~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 114 FICPVTGKEFNG---------KHKFVYLRPCGCVFSEKALKEL-KK---SKKCPVCGKPFT 161 (260)
T ss_pred eECCCCCcccCC---------ceeEEEEcCCCCEeeHHHHHhh-cc---cccccccCCccc
Confidence 579999999843 1112333469999999999876 22 567999999875
No 80
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.42 E-value=0.11 Score=48.04 Aligned_cols=53 Identities=17% Similarity=0.469 Sum_probs=33.9
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.+++-|++|+|++..-+. -..-..||...|.-|-..- ++ ..+..||-||+.+.
T Consensus 12 deed~cplcie~mditdk---------nf~pc~cgy~ic~fc~~~i-rq-~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDK---------NFFPCPCGYQICQFCYNNI-RQ-NLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccC---------CcccCCcccHHHHHHHHHH-Hh-hccCCChHhhhhcc
Confidence 355779999999976322 2333459987666663321 11 23678999999654
No 81
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.97 E-value=0.061 Score=37.01 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=25.3
Q ss_pred eecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 183 VWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 183 ~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
+++.|||+.+..|..-+- -+-||+|.++|++-
T Consensus 21 ~~~pCgH~I~~~~f~~~r-----YngCPfC~~~~~~~ 52 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGER-----YNGCPFCGTPFEFD 52 (55)
T ss_pred ccccccceeeccccChhh-----ccCCCCCCCcccCC
Confidence 444599999999987652 45799999998874
No 82
>KOG1001|consensus
Probab=91.78 E-value=0.069 Score=53.50 Aligned_cols=45 Identities=27% Similarity=0.711 Sum_probs=33.6
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|.||++ ... ++.+ .|||.||.+|+..-+... ...-||+||..+
T Consensus 455 ~~c~ic~~-~~~------------~~it-~c~h~~c~~c~~~~i~~~-~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDS------------FFIT-RCGHDFCVECLKKSIQQS-ENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-ccc------------ceee-cccchHHHHHHHhccccc-cCCCCcHHHHHH
Confidence 57999999 322 3444 499999999999988762 244699999754
No 83
>KOG3039|consensus
Probab=91.67 E-value=0.13 Score=45.63 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=38.4
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
...|+||.+.+... -.| .++-.|||||+.+|+.+.++. -..||||-.+.
T Consensus 221 ryiCpvtrd~LtNt--------~~c-a~Lr~sg~Vv~~ecvEklir~---D~v~pv~d~pl 269 (303)
T KOG3039|consen 221 RYICPVTRDTLTNT--------TPC-AVLRPSGHVVTKECVEKLIRK---DMVDPVTDKPL 269 (303)
T ss_pred ceecccchhhhcCc--------cce-EEeccCCcEeeHHHHHHhccc---cccccCCCCcC
Confidence 35799999998662 222 233459999999999999998 88999997754
No 84
>KOG1814|consensus
Probab=91.52 E-value=0.11 Score=49.01 Aligned_cols=47 Identities=26% Similarity=0.517 Sum_probs=33.9
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--C---CCCCCCCcC
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--Q---VHHQCPMCR 213 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~---~~~sCPvCR 213 (220)
-.|.||+++... .+ -...+.|+|+||..|+..++... . +.-.||-+.
T Consensus 185 f~C~ICf~e~~G---------~~-c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 185 FDCCICFEEQMG---------QH-CFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred ccceeeehhhcC---------cc-eeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 579999999854 22 34455599999999999999863 1 245566553
No 85
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.00 E-value=0.28 Score=39.64 Aligned_cols=52 Identities=21% Similarity=0.525 Sum_probs=37.1
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
-.|.||.|.-.+. +=+-.+++ ||-..|..|-..-.+.-...+.||+|+..|+
T Consensus 81 YeCnIC~etS~ee---~FLKPneC------CgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 81 YECNICKETSAEE---RFLKPNEC------CGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred eeccCcccccchh---hcCCcccc------cchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 5799999987662 22222344 9999999976655544345999999999764
No 86
>KOG4692|consensus
Probab=90.87 E-value=0.17 Score=47.03 Aligned_cols=48 Identities=27% Similarity=0.561 Sum_probs=37.5
Q ss_pred cCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 153 ~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
+.++..|+||.-.=-. . +...|+|.=|..||..-|-. .+.|=.|+..+
T Consensus 419 ~sEd~lCpICyA~pi~------------A-vf~PC~H~SC~~CI~qHlmN---~k~CFfCktTv 466 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPIN------------A-VFAPCSHRSCYGCITQHLMN---CKRCFFCKTTV 466 (489)
T ss_pred CcccccCcceecccch------------h-hccCCCCchHHHHHHHHHhc---CCeeeEeccee
Confidence 4678999999654221 2 33449999999999999998 89999998754
No 87
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.79 E-value=0.19 Score=51.10 Aligned_cols=54 Identities=33% Similarity=0.835 Sum_probs=40.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCC-----cchHHHHHHHHHhCCCCCCCCCcCccccccC
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSH-----CFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE 220 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgH-----vFH~~CI~~WL~~~~~~~sCPvCR~e~~~~~ 220 (220)
++..|-||..+=.. +.|+.-+ |+. ..|.+|+..|+.- ++...|-+|..+++||+
T Consensus 11 d~~~CRICr~e~~~----------d~pLfhP-CKC~GSIkYiH~eCL~eW~~~-s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 11 DKRSCRICRTEDIR----------DDPLFHP-CKCSGSIKYIHRECLMEWMEC-SGTKKCDICHYEYKFKD 69 (1175)
T ss_pred cchhceeecCCCCC----------CCcCccc-ccccchhHHHHHHHHHHHHhc-CCCcceeeecceeeeee
Confidence 34789999876433 3355544 443 5899999999985 66889999999999984
No 88
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.74 E-value=0.19 Score=32.62 Aligned_cols=25 Identities=28% Similarity=0.850 Sum_probs=16.3
Q ss_pred CCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 187 CSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 187 CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
|+=.+|..|+..+++.. ..+.||.|
T Consensus 19 C~~r~H~~C~~~y~r~~-~~~~CP~C 43 (43)
T PF08746_consen 19 CNVRLHDDCFKKYFRHR-SNPKCPNC 43 (43)
T ss_dssp S--EE-HHHHHHHTTT--SS-B-TTT
T ss_pred cCchHHHHHHHHHHhcC-CCCCCcCC
Confidence 88899999999999882 23379988
No 89
>KOG0298|consensus
Probab=89.78 E-value=0.11 Score=54.78 Aligned_cols=43 Identities=26% Similarity=0.587 Sum_probs=35.8
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
-.|.||++.+... -.+. .|||.||..|+..|+.. +..||.|..
T Consensus 1154 ~~c~ic~dil~~~-----------~~I~-~cgh~~c~~c~~~~l~~---~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQ-----------GGIA-GCGHEPCCRCDELWLYA---SSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHhc-----------CCee-eechhHhhhHHHHHHHH---hccCcchhh
Confidence 3799999999752 1233 39999999999999999 999999975
No 90
>KOG1940|consensus
Probab=89.64 E-value=0.23 Score=44.62 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=36.5
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
..|+||.+.+-.. .. ....++|||.-|..|+...... +-.||+|.+
T Consensus 159 ~ncPic~e~l~~s--------~~-~~~~~~CgH~~h~~cf~e~~~~---~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLS--------FE-DAGVLKCGHYMHSRCFEEMICE---GYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccc--------cc-cCCccCcccchHHHHHHHHhcc---CCCCCcccc
Confidence 4599999988663 12 3444569999999999998888 699999987
No 91
>KOG0801|consensus
Probab=89.30 E-value=0.14 Score=42.76 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=21.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchH
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHI 193 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~ 193 (220)
....|.||||+++.++....+ .|-.+||.
T Consensus 176 dkGECvICLEdL~~GdtIARL----------PCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARL----------PCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceecc----------ceEEEeec
Confidence 347899999999885444444 49999995
No 92
>KOG3899|consensus
Probab=87.55 E-value=0.38 Score=43.74 Aligned_cols=30 Identities=23% Similarity=0.705 Sum_probs=25.4
Q ss_pred CCCcchHHHHHHHHHhC----------CCCCCCCCcCccc
Q psy14827 187 CSHCFHIHCIMKWLNSQ----------QVHHQCPMCRQEW 216 (220)
Q Consensus 187 CgHvFH~~CI~~WL~~~----------~~~~sCPvCR~e~ 216 (220)
|.-.+|.+|+.+|+... .++-.||+||+.|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 88889999999999653 2689999999976
No 93
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.53 E-value=0.65 Score=31.86 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=34.6
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC--cCcccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM--CRQEWKFK 219 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv--CR~e~~~~ 219 (220)
..|.+|-+.|+++ +..++-..||-.||+.|-. . ...|-+ |...+.++
T Consensus 6 ~~C~~Cg~~~~~~---------dDiVvCp~CgapyHR~C~~---~----~g~C~~~~c~~~~~~~ 54 (54)
T PF14446_consen 6 CKCPVCGKKFKDG---------DDIVVCPECGAPYHRDCWE---K----AGGCINYSCGTGFEWK 54 (54)
T ss_pred ccChhhCCcccCC---------CCEEECCCCCCcccHHHHh---h----CCceEeccCCCCcccC
Confidence 5799999999763 2256667799999999943 2 566766 77766654
No 94
>KOG3053|consensus
Probab=87.27 E-value=0.32 Score=43.41 Aligned_cols=56 Identities=25% Similarity=0.615 Sum_probs=37.4
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceec-CC---CCcchHHHHHHHHHhCC-----CCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWG-QC---SHCFHIHCIMKWLNSQQ-----VHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~-~C---gHvFH~~CI~~WL~~~~-----~~~sCPvCR~e~~~ 218 (220)
.+..|-||+..=+|.-.. ..|-+ .| .|--|..|+..|+.+++ ...+||.|+.|+-.
T Consensus 19 ~eR~CWiCF~TdeDn~~a--------~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLA--------AWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchh--------hhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 346899998876662111 11222 23 47789999999998732 35689999998754
No 95
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=87.20 E-value=0.8 Score=38.06 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=22.2
Q ss_pred CcccccccccccccCC-CCCCCCCCCCceecCCCCcc-hHHHHHHHHHh
Q psy14827 156 DDTCGICRIAFEGCCS-DCKLPGDDCPLVWGQCSHCF-HIHCIMKWLNS 202 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~-~~~~p~~~~~~~~~~CgHvF-H~~CI~~WL~~ 202 (220)
+..|+||||.=-.+.+ .|-.=.+++...+ |+-.| |..|++.+-+.
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpym--c~Ts~rhSNCLdqfkka 48 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM--CDTSYRHSNCLDQFKKA 48 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccc--cCCccchhHHHHHHHHH
Confidence 4579999986432100 0000011111111 54444 78899988764
No 96
>KOG2817|consensus
Probab=87.16 E-value=0.5 Score=44.36 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=38.1
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
-.|+|=.+.-.+ +.|...+.||||...+-|.+-.+....+.-||.|=.+
T Consensus 335 F~CPVlKeqtsd----------eNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSD----------ENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccC----------CCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 579998877654 5677777899999999999987763223789999654
No 97
>KOG3002|consensus
Probab=86.63 E-value=0.53 Score=42.81 Aligned_cols=43 Identities=21% Similarity=0.467 Sum_probs=34.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
-.|+||.+.+.. |+.--.=||+-|..|-. +. ...||.||-++-
T Consensus 49 leCPvC~~~l~~------------Pi~QC~nGHlaCssC~~---~~---~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 49 LDCPVCFNPLSP------------PIFQCDNGHLACSSCRT---KV---SNKCPTCRLPIG 91 (299)
T ss_pred ccCchhhccCcc------------cceecCCCcEehhhhhh---hh---cccCCccccccc
Confidence 579999999966 66665568999999965 23 778999998764
No 98
>KOG1812|consensus
Probab=84.59 E-value=0.48 Score=44.41 Aligned_cols=45 Identities=24% Similarity=0.643 Sum_probs=34.8
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
..|++|.-.++- ..++--++-.|||.|++.|..+|... +..|..|
T Consensus 307 r~CpkC~~~ie~--------~~GCnhm~CrC~~~fcy~C~~~~~~~---~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIEL--------SEGCNHMTCRCGHQFCYMCGGDWKTH---NGECYEC 351 (384)
T ss_pred CcCcccceeeee--------cCCcceEEeeccccchhhcCcchhhC---CccccCc
Confidence 579999888865 34566666669999999999999887 6666443
No 99
>KOG4718|consensus
Probab=83.66 E-value=0.61 Score=40.52 Aligned_cols=45 Identities=27% Similarity=0.777 Sum_probs=36.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
-.|.+|.+-.-. .+.-..||-.||..||...+.. .+.||-|..-|
T Consensus 182 k~Cn~Ch~LvIq------------g~rCg~c~i~~h~~c~qty~q~---~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQ------------GIRCGSCNIQYHRGCIQTYLQR---RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhhe------------eeccCcccchhhhHHHHHHhcc---cCcCCchhccc
Confidence 589999887754 2344569999999999999999 99999996544
No 100
>KOG2932|consensus
Probab=82.85 E-value=0.6 Score=42.81 Aligned_cols=27 Identities=30% Similarity=0.817 Sum_probs=20.0
Q ss_pred cCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 185 GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 185 ~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+|+||.+|... .. -+.||.|-..+
T Consensus 107 IPCkHvFCl~CAr~--~~---dK~Cp~C~d~V 133 (389)
T KOG2932|consen 107 IPCKHVFCLECARS--DS---DKICPLCDDRV 133 (389)
T ss_pred cccchhhhhhhhhc--Cc---cccCcCcccHH
Confidence 34999999999753 12 56899996544
No 101
>KOG4362|consensus
Probab=82.76 E-value=0.35 Score=48.35 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=37.5
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||+..+.+ | +.+.|-|.|+..|+..=+....+...||||+...+
T Consensus 22 lEc~ic~~~~~~------------p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 22 LECPICLEHVKE------------P-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred ccCCceeEEeec------------c-chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 579999999988 4 55569999999998876655323678999996543
No 102
>KOG1829|consensus
Probab=81.61 E-value=0.47 Score=46.74 Aligned_cols=29 Identities=28% Similarity=0.693 Sum_probs=21.2
Q ss_pred cCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 185 GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 185 ~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
..||++||..|... . ++-||-|-+-++++
T Consensus 535 ~~C~avfH~~C~~r---~---s~~CPrC~R~q~r~ 563 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR---K---SPCCPRCERRQKRA 563 (580)
T ss_pred HHHHHHHHHHHHhc---c---CCCCCchHHHHHHh
Confidence 34999999999653 2 55699997755544
No 103
>KOG3039|consensus
Probab=80.67 E-value=1.6 Score=39.00 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS 202 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~ 202 (220)
+.|.+||.++.+ |++.. =||+|+.+||...+..
T Consensus 44 dcCsLtLqPc~d------------Pvit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 44 DCCSLTLQPCRD------------PVITP-DGYLFDREAILEYILA 76 (303)
T ss_pred ceeeeecccccC------------CccCC-CCeeeeHHHHHHHHHH
Confidence 789999999988 66665 8999999999998754
No 104
>KOG3161|consensus
Probab=79.00 E-value=0.98 Score=45.09 Aligned_cols=43 Identities=30% Similarity=0.539 Sum_probs=30.8
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
-.|.||+..|-.. .-+|+ .+.|||..|..|+..-... +|| |.+
T Consensus 12 l~c~ic~n~f~~~--------~~~Pv-sl~cghtic~~c~~~lyn~-----scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQ--------RLEPV-SLQCGHTICGHCVQLLYNA-----SCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHH--------hcCcc-cccccchHHHHHHHhHhhc-----cCC-CCc
Confidence 4699999998762 11233 4459999999999876544 899 543
No 105
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=78.88 E-value=2.2 Score=28.41 Aligned_cols=45 Identities=20% Similarity=0.494 Sum_probs=21.4
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--CCCCCCCCcCcc
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--QVHHQCPMCRQE 215 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~~~~sCPvCR~e 215 (220)
.|+|....++. |+....|.|+-+.+ +..||... .+.-.||+|.++
T Consensus 4 ~CPls~~~i~~------------P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI------------PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS------------EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe------------CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 58888888865 67777799984322 44565542 124569999863
No 106
>KOG2066|consensus
Probab=77.32 E-value=0.83 Score=46.37 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS 202 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~ 202 (220)
.+..|..|.+.......+ + .-++...|||+||..|+..-.-.
T Consensus 783 ~e~rc~~c~~~~l~~~~~---~---~~~~v~~c~h~yhk~c~~~~~~~ 824 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAA---F---DSVVVFHCGHMYHKECLMMESLR 824 (846)
T ss_pred ehhhhhhhcccccccCcc---c---ceeeEEEccchhhhcccccHHHh
Confidence 346899999988642110 1 13556679999999999887765
No 107
>KOG0802|consensus
Probab=76.38 E-value=1.3 Score=43.25 Aligned_cols=45 Identities=33% Similarity=0.801 Sum_probs=35.2
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
..+.|.||+.++ . ..+. .|. |..|...|+.. +..||+|+....+.
T Consensus 478 ~~~~~~~~~~~~-~------------~~~~-~~~---~~~~l~~~~~~---~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 478 PNDVCAICYQEM-S------------ARIT-PCS---HALCLRKWLYV---QEVCPLCHTYMKED 522 (543)
T ss_pred ccCcchHHHHHH-H------------hccc-ccc---chhHHHhhhhh---ccccCCCchhhhcc
Confidence 347899999998 3 1112 266 99999999999 99999999877664
No 108
>KOG4185|consensus
Probab=74.44 E-value=2.4 Score=37.68 Aligned_cols=38 Identities=32% Similarity=0.658 Sum_probs=28.0
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN 201 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~ 201 (220)
..|-||-++|...+ ++..|.++ .|||.|+..|+..-+.
T Consensus 4 ~~c~~c~~~~s~~~------~~~~p~~l-~c~h~~c~~c~~~l~~ 41 (296)
T KOG4185|consen 4 PECEICNEDYSSED------GDHIPRVL-KCGHTICQNCASKLLG 41 (296)
T ss_pred CceeecCccccccC------cccCCccc-ccCceehHhHHHHHhc
Confidence 46999999998841 22334444 4999999999987654
No 109
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.27 E-value=2.4 Score=39.03 Aligned_cols=48 Identities=17% Similarity=0.404 Sum_probs=36.9
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
-.|++=.+.-.+ +.|.+++.|||+.-.+-++.--+....+.-||.|=.
T Consensus 337 FiCPVlKe~~t~----------ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTD----------ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcc----------cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 468887766543 568888889999999999887666444788999954
No 110
>KOG1812|consensus
Probab=73.07 E-value=2.1 Score=40.24 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=31.0
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCC
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPM 211 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPv 211 (220)
...|.||..++... +..-. +..|+|.||.+|+...+..+ .....||-
T Consensus 146 ~~~C~iC~~e~~~~--------~~~f~-~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEA--------EDMFS-VLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccH--------hhhHH-HhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 46899999444331 11122 45699999999999888753 23566654
No 111
>KOG0269|consensus
Probab=71.10 E-value=3.5 Score=41.93 Aligned_cols=40 Identities=25% Similarity=0.667 Sum_probs=29.7
Q ss_pred cccccccccccccCCCCCCCCCCCCcee-cCCCCcchHHHHHHHHHhCCCCCCCCC
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHCFHIHCIMKWLNSQQVHHQCPM 211 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHvFH~~CI~~WL~~~~~~~sCPv 211 (220)
..|++|-..+.. ..++ ..|||.=|..|+..|+.. ...||.
T Consensus 780 ~~CtVC~~vi~G------------~~~~c~~C~H~gH~sh~~sw~~~---~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG------------VDVWCQVCGHGGHDSHLKSWFFK---ASPCAK 820 (839)
T ss_pred cCceeecceeee------------eEeecccccccccHHHHHHHHhc---CCCCcc
Confidence 467777666644 2233 359999999999999998 777766
No 112
>KOG3842|consensus
Probab=70.01 E-value=3.8 Score=37.85 Aligned_cols=56 Identities=23% Similarity=0.488 Sum_probs=37.0
Q ss_pred cccccccccccccCCCC-CCCCCCCCceecCCCCcchHHHHHHHHHh-C--CCCCCCCCcCcc
Q psy14827 157 DTCGICRIAFEGCCSDC-KLPGDDCPLVWGQCSHCFHIHCIMKWLNS-Q--QVHHQCPMCRQE 215 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~-~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~--~~~~sCPvCR~e 215 (220)
..|++=|+.+.-....+ ......+|.+-+.|||+-..+ .|=.. + +....||+||..
T Consensus 291 PQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 291 PQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CCCCcccceeecccccccccccccCCeEEEecccccccc---ccccccccCcccCcCCeeeee
Confidence 46998888776544443 233456799999999985432 45432 1 237889999974
No 113
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=68.76 E-value=0.96 Score=31.46 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=20.5
Q ss_pred ecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHH
Q psy14827 150 WRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWL 200 (220)
Q Consensus 150 ~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL 200 (220)
|..+.+...|.+|...|..- .. .-.--.||++|+..|.....
T Consensus 3 W~~d~~~~~C~~C~~~F~~~------~r---rhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 3 WVPDSEASNCMICGKKFSLF------RR---RHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp SSSGGG-SB-TTT--B-BSS------S----EEE-TTT--EEECCCS-EEE
T ss_pred cCCCCCCCcCcCcCCcCCCc------ee---eEccCCCCCEECCchhCCEE
Confidence 55666778999999999541 00 11112499999999976443
No 114
>KOG1815|consensus
Probab=68.64 E-value=3.5 Score=39.16 Aligned_cols=37 Identities=30% Similarity=0.711 Sum_probs=29.3
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~ 203 (220)
....|.||.+.+.. .++.+.|||.|+..|+...+..+
T Consensus 69 ~~~~c~ic~~~~~~------------~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 69 GDVQCGICVESYDG------------EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred ccccCCcccCCCcc------------hhhhcCCCcHHHHHHHHHHhhhe
Confidence 34679999999854 34555699999999999999773
No 115
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=68.49 E-value=1.6 Score=41.13 Aligned_cols=59 Identities=22% Similarity=0.499 Sum_probs=0.0
Q ss_pred cccccccccccccCCCC-CCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCCcCccccc
Q psy14827 157 DTCGICRIAFEGCCSDC-KLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPMCRQEWKF 218 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~-~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPvCR~e~~~ 218 (220)
..|++=|..+.-..... ..+.+..|.+-+.||||+..+ .|-... ....+||+||..=.|
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 46877776664322222 122345688889999999854 675431 126789999985433
No 116
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=68.27 E-value=2.7 Score=37.46 Aligned_cols=50 Identities=26% Similarity=0.489 Sum_probs=36.0
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCC--CcC
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCP--MCR 213 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCP--vCR 213 (220)
.+..|+||..+.-. -| +-.-++-+.|-|-.|..|+++-+.. |-..|| -|.
T Consensus 9 ~d~~CPvCksDrYL------nP-dik~linPECyHrmCESCvdRIFs~--GpAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYL------NP-DIKILINPECYHRMCESCVDRIFSR--GPAQCPYKGCG 60 (314)
T ss_pred hcccCCcccccccc------CC-CeEEEECHHHHHHHHHHHHHHHhcC--CCCCCCCccHH
Confidence 35689999988654 12 1112333569999999999999987 578899 564
No 117
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=66.49 E-value=2 Score=28.82 Aligned_cols=28 Identities=21% Similarity=0.710 Sum_probs=21.8
Q ss_pred CCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 187 CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
=.|..|..|+..-|.. ...||+|..++.
T Consensus 19 ~dHYLCl~CLt~ml~~---s~~C~iC~~~LP 46 (50)
T PF03854_consen 19 SDHYLCLNCLTLMLSR---SDRCPICGKPLP 46 (50)
T ss_dssp SS-EEEHHHHHHT-SS---SSEETTTTEE--
T ss_pred cchhHHHHHHHHHhcc---ccCCCcccCcCc
Confidence 3699999999999999 999999988764
No 118
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=65.69 E-value=11 Score=39.05 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=35.1
Q ss_pred CCccccccccceecccCC-CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH
Q psy14827 138 FNPMVGWTGVATWRWVAN-DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN 201 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~-~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~ 201 (220)
.|.+.+......|..+.+ .+.|..|...|-.-....-....+ --.||++||..|-.....
T Consensus 441 ~~~l~k~LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHH----CRkCGrVFC~~CSSnRs~ 501 (1374)
T PTZ00303 441 TFGLTKLLHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHH----CRSCGIRLCVFCITKRAH 501 (1374)
T ss_pred hhhhhhhccCCCCCCCcccCCcccCcCCccccccccccccccc----ccCCccccCccccCCccc
Confidence 344555445566777665 378999999994310000000001 124999999999876653
No 119
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=65.51 E-value=4.2 Score=29.08 Aligned_cols=12 Identities=33% Similarity=0.980 Sum_probs=9.2
Q ss_pred chHHHHHHHHHh
Q psy14827 191 FHIHCIMKWLNS 202 (220)
Q Consensus 191 FH~~CI~~WL~~ 202 (220)
||+.|+.+|+..
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 120
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=63.45 E-value=3.5 Score=25.61 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=20.7
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcch
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFH 192 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH 192 (220)
.|+=|.-.|...+. ++|.....+.-..|||+|+
T Consensus 4 ~Cp~C~~~y~i~d~--~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDE--KIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHH--HCCCCCcEEECCCCCCEeC
Confidence 58888888876422 3443333445567888885
No 121
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1815|consensus
Probab=60.66 E-value=2.7 Score=40.00 Aligned_cols=38 Identities=21% Similarity=0.584 Sum_probs=27.0
Q ss_pred cccccccccccccCCCCCCCCCCCCcee---cCCCCcchHHHHHHHHHh
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVW---GQCSHCFHIHCIMKWLNS 202 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~---~~CgHvFH~~CI~~WL~~ 202 (220)
..|+.|.-.++. +.++.-.. ..|+|.|||.|+..|...
T Consensus 227 k~CP~c~~~iek--------~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEK--------DGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhc--------cCCccccccccCCcCCeeceeeecccccc
Confidence 459999999876 22332212 139999999999998764
No 123
>PLN02189 cellulose synthase
Probab=59.85 E-value=7.5 Score=40.96 Aligned_cols=52 Identities=21% Similarity=0.481 Sum_probs=36.9
Q ss_pred cccccccccccccCCCCCCCCCCCCcee-cCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|.||-+++... .++.+.+. ..|+---|..|. ..-+. +++..||-|+..++
T Consensus 35 ~~C~iCgd~vg~~-------~~g~~fvaC~~C~fpvCr~Cy-eyer~-eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLT-------VDGDLFVACNECGFPVCRPCY-EYERR-EGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcC-------CCCCEEEeeccCCCccccchh-hhhhh-cCCccCcccCCchh
Confidence 5799999998641 11223333 358888999998 44443 68999999998765
No 124
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=58.34 E-value=5.8 Score=33.82 Aligned_cols=26 Identities=27% Similarity=0.810 Sum_probs=19.6
Q ss_pred CceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 181 PLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 181 ~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
...-..|+-+||..|.. +..||-|-+
T Consensus 172 ~~~C~~C~~v~H~~C~~--------~~~CpkC~R 197 (202)
T PF13901_consen 172 TVRCPKCKSVFHKSCFR--------KKSCPKCAR 197 (202)
T ss_pred eeeCCcCccccchhhcC--------CCCCCCcHh
Confidence 34445799999999975 346999954
No 125
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=58.30 E-value=14 Score=27.32 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=22.0
Q ss_pred CcccccccccccccCCCCCCCCCCCCc-eecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPL-VWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~-~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
...|-||=+++-.. . ++.+. .-..|+--.|..|..-=.+. ++..||-|+..++
T Consensus 9 ~qiCqiCGD~VGl~------~-~Ge~FVAC~eC~fPvCr~CyEYErke--g~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLT------E-NGEVFVACHECAFPVCRPCYEYERKE--GNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-------S-SSSB--S-SSS-----HHHHHHHHHT--S-SB-TTT--B--
T ss_pred CcccccccCccccC------C-CCCEEEEEcccCCccchhHHHHHhhc--CcccccccCCCcc
Confidence 36799999998652 1 11122 22358888899998755554 7999999998764
No 126
>KOG1356|consensus
Probab=57.63 E-value=4.9 Score=41.27 Aligned_cols=49 Identities=16% Similarity=0.472 Sum_probs=31.7
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHH---HhCCCCCCCCCcCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWL---NSQQVHHQCPMCRQ 214 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL---~~~~~~~sCPvCR~ 214 (220)
....|-.|.-..-. ...+-..|||.||..|+..|. +..+....|++|+.
T Consensus 228 ~~~mC~~C~~tlfn-----------~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 228 IREMCDRCETTLFN-----------IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred cchhhhhhcccccc-----------eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 34678888665432 134446799999999999995 22233556666653
No 127
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=56.55 E-value=6.6 Score=23.21 Aligned_cols=36 Identities=25% Similarity=0.643 Sum_probs=22.9
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
|+.|.+.+... ......=+..||.+|+ .|..|+..+
T Consensus 2 C~~C~~~i~~~-----------~~~~~~~~~~~H~~Cf-----------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGG-----------ELVLRALGKVWHPECF-----------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCC-----------cEEEEeCCccccccCC-----------CCcccCCcC
Confidence 77888877551 1222225778998885 477777654
No 128
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=55.19 E-value=4.2 Score=27.21 Aligned_cols=12 Identities=25% Similarity=0.833 Sum_probs=6.2
Q ss_pred CCCCCCcCcccc
Q psy14827 206 HHQCPMCRQEWK 217 (220)
Q Consensus 206 ~~sCPvCR~e~~ 217 (220)
...||||.++|.
T Consensus 20 ~~~CPlC~r~l~ 31 (54)
T PF04423_consen 20 KGCCPLCGRPLD 31 (54)
T ss_dssp SEE-TTT--EE-
T ss_pred CCcCCCCCCCCC
Confidence 348999999864
No 129
>KOG2979|consensus
Probab=54.22 E-value=7 Score=34.91 Aligned_cols=42 Identities=21% Similarity=0.540 Sum_probs=34.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM 211 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv 211 (220)
..|+|=+-++.. |++..+|||+|-.+=|...+.- ...-.||+
T Consensus 177 ~rdPis~~~I~n------------PviSkkC~HvydrDsI~~~l~~-~~~i~CPv 218 (262)
T KOG2979|consen 177 NRDPISKKPIVN------------PVISKKCGHVYDRDSIMQILCD-EITIRCPV 218 (262)
T ss_pred ccCchhhhhhhc------------hhhhcCcCcchhhhhHHHHhcc-Cceeeccc
Confidence 579999888866 7888899999999999998854 23567887
No 130
>PLN02436 cellulose synthase A
Probab=51.83 E-value=12 Score=39.61 Aligned_cols=52 Identities=27% Similarity=0.597 Sum_probs=36.6
Q ss_pred cccccccccccccCCCCCCCCCCCCcee-cCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|-||-+++... .++.+.|. ..|+---|..|. ..-+. +++..||-|+..++
T Consensus 37 ~iCqICGD~Vg~t-------~dGe~FVACn~C~fpvCr~Cy-eyer~-eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELT-------VDGEPFVACNECAFPVCRPCY-EYERR-EGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcC-------CCCCEEEeeccCCCccccchh-hhhhh-cCCccCcccCCchh
Confidence 5899999998551 11223333 348877999998 44443 68999999998765
No 131
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=51.35 E-value=7.1 Score=34.65 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=34.6
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM 211 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv 211 (220)
+..|+|=+.++.. |+...+|+|+|-.+-|...|.. .-...||.
T Consensus 189 ~nrCpitl~p~~~------------pils~kcnh~~e~D~I~~~lq~-~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFY------------PILSSKCNHKPEMDLINKKLQV-ECTRVCPR 231 (275)
T ss_pred cccCCcccCcchh------------HHHHhhhcccccHHHHHHHhcC-Cceeecch
Confidence 3689999999866 8888899999999999999984 11455664
No 132
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=50.62 E-value=7.2 Score=24.25 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=19.1
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcch
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFH 192 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH 192 (220)
.|+-|.-.|+..+.. ++..+..+.-..|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~--l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDK--LPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHH--cccCCcEEECCCCCcEee
Confidence 588888888764322 222222444456787775
No 133
>KOG3113|consensus
Probab=50.29 E-value=12 Score=33.47 Aligned_cols=47 Identities=13% Similarity=0.319 Sum_probs=30.8
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
-.|+|=--+|.. .-.=.+...|||||-..-+..- +..+|++|.+.|+
T Consensus 112 fiCPvtgleMng---------~~~F~~l~~CGcV~SerAlKei-----kas~C~~C~a~y~ 158 (293)
T KOG3113|consen 112 FICPVTGLEMNG---------KYRFCALRCCGCVFSERALKEI-----KASVCHVCGAAYQ 158 (293)
T ss_pred eecccccceecc---------eEEEEEEeccceeccHHHHHHh-----hhccccccCCccc
Confidence 358877666643 1112233359999998776653 2568999999765
No 134
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=49.75 E-value=9.4 Score=22.16 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=5.5
Q ss_pred cccccccccc
Q psy14827 159 CGICRIAFEG 168 (220)
Q Consensus 159 CaICLe~f~~ 168 (220)
|+-|-..+..
T Consensus 3 CP~C~~~V~~ 12 (26)
T PF10571_consen 3 CPECGAEVPE 12 (26)
T ss_pred CCCCcCCchh
Confidence 5666555533
No 135
>KOG3579|consensus
Probab=49.55 E-value=7 Score=35.62 Aligned_cols=38 Identities=29% Similarity=0.523 Sum_probs=27.1
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~ 203 (220)
-.|++|.|.++|- ..- .||.| =.|-||..|-+.-++.+
T Consensus 269 LcCTLC~ERLEDT-HFV-----QCPSV---p~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 269 LCCTLCHERLEDT-HFV-----QCPSV---PSHKFCFPCSRESIKQQ 306 (352)
T ss_pred eeehhhhhhhccC-cee-----ecCCC---cccceecccCHHHHHhh
Confidence 6899999999871 111 12222 47999999999988873
No 136
>KOG0825|consensus
Probab=49.12 E-value=14 Score=38.20 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=33.6
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCCcCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPMCRQ 214 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPvCR~ 214 (220)
..+.|.||.-++...+.. .+ .+|+. .|+|.||-.||..|+..- ..+-.|++|.+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds--~~--i~P~~--~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDS--SN--ICPVQ--THVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccchhheecCCcccc--cC--cCchh--hhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 446777777777551110 00 12222 399999999999999651 23566788865
No 137
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=47.24 E-value=17 Score=38.66 Aligned_cols=52 Identities=23% Similarity=0.558 Sum_probs=36.5
Q ss_pred cccccccccccccCCCCCCCCCCCCcee-cCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|-||=+++... . ++.+.|. ..|+---|..|- ..-+. +++..||.|+..++
T Consensus 18 qiCqICGD~vg~~------~-~Ge~FVAC~eC~FPVCrpCY-EYEr~-eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKT------V-DGEPFVACDVCAFPVCRPCY-EYERK-DGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcC------C-CCCEEEEeccCCCccccchh-hhhhh-cCCccCCccCCchh
Confidence 5899999998652 1 1223332 357777999998 44443 68999999998764
No 138
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.08 E-value=12 Score=28.55 Aligned_cols=12 Identities=25% Similarity=0.913 Sum_probs=11.4
Q ss_pred chHHHHHHHHHh
Q psy14827 191 FHIHCIMKWLNS 202 (220)
Q Consensus 191 FH~~CI~~WL~~ 202 (220)
||..|+..|++.
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
No 139
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.75 E-value=19 Score=28.21 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=34.6
Q ss_pred CCcccccccccccccCCCCCC-CCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKL-PGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~-p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
.+..|--|+..|......-+. ..+...-.-..|++.|+.+|=.=+-.. =..||-|..
T Consensus 54 ~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~---Lh~CPGC~~ 111 (112)
T TIGR00622 54 GSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES---LHCCPGCIH 111 (112)
T ss_pred CCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh---ccCCcCCCC
Confidence 345799999999753110000 001112334679999999995555444 667999953
No 140
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3842|consensus
Probab=44.90 E-value=20 Score=33.31 Aligned_cols=62 Identities=19% Similarity=0.547 Sum_probs=38.0
Q ss_pred CCccccccccccc--ccCCCCCCC---CCCCCc-eecCCCCcchHHHHHHHHHhC------CCCCCCCCcCccc
Q psy14827 155 NDDTCGICRIAFE--GCCSDCKLP---GDDCPL-VWGQCSHCFHIHCIMKWLNSQ------QVHHQCPMCRQEW 216 (220)
Q Consensus 155 ~~~~CaICLe~f~--~~~~~~~~p---~~~~~~-~~~~CgHvFH~~CI~~WL~~~------~~~~sCPvCR~e~ 216 (220)
.++.|++|+..=. .....++.. +.+-|. ....|||+--..=..=|.+.. ..+..||.|-+.+
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 4689999987532 111122211 111121 223599998888899998763 3588999997643
No 142
>KOG2068|consensus
Probab=44.82 E-value=16 Score=33.67 Aligned_cols=50 Identities=20% Similarity=0.513 Sum_probs=36.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
..|+||-++.... +...+-..|||.-|+.|...=... ...||.||.++.+
T Consensus 250 ~s~p~~~~~~~~~---------d~~~lP~~~~~~~~l~~~~t~~~~---~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLT---------DSNFLPCPCGFRLCLFCHKTISDG---DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccc---------ccccccccccccchhhhhhccccc---CCCCCccCCcccc
Confidence 6799999987431 223333459999888888766555 9999999987665
No 143
>KOG1609|consensus
Probab=44.30 E-value=11 Score=33.27 Aligned_cols=52 Identities=23% Similarity=0.533 Sum_probs=34.9
Q ss_pred cccccccccccccCC-CCCCCCCCCCceecCCC---CcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCS-DCKLPGDDCPLVWGQCS---HCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~-~~~~p~~~~~~~~~~Cg---HvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|=||.++...... ....| ..|+ +..|..|+..|+.. .++..|.+|...+.
T Consensus 79 ~~cRIc~~~~~~~~~~~l~~p--------C~C~g~l~~vH~~cl~~W~~~-~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 79 PICRICHEEDEESNGLLLISP--------CSCKGSLAYVHRSCLEKWFSI-KGNITCEICKSFFI 134 (323)
T ss_pred CcEEEEecccccccccccccC--------ccccCcHHHHHHHHHHhhhcc-ccCeeeecccccce
Confidence 679999997754211 11111 1122 46799999999985 45899999987654
No 144
>KOG3005|consensus
Probab=42.83 E-value=28 Score=31.37 Aligned_cols=53 Identities=21% Similarity=0.481 Sum_probs=34.3
Q ss_pred Cccccccccccc-ccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC------CCCCCCCCcCcc
Q psy14827 156 DDTCGICRIAFE-GCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ------QVHHQCPMCRQE 215 (220)
Q Consensus 156 ~~~CaICLe~f~-~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~------~~~~sCPvCR~e 215 (220)
...|-+|..+|. .......-|. ..|+-++|..|+..-+... .....||.|++-
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~-------~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPN-------PDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred chhhHHHHHHhccccceeccCCC-------CCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 368999999994 3211111111 1299999999999954431 136789999873
No 145
>PLN02195 cellulose synthase A
Probab=42.06 E-value=26 Score=36.88 Aligned_cols=52 Identities=15% Similarity=0.353 Sum_probs=36.9
Q ss_pred cccccccccccccCCCCCCCCCCCCce-ecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLV-WGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~-~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|.||=+++... .++.+.+ -..|+---|..|- ..-+. +|+..||.|+..++
T Consensus 7 ~~c~~cgd~~~~~-------~~g~~fvaC~eC~~pvCrpCy-eyer~-eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVD-------SNGEAFVACHECSYPLCKACL-EYEIK-EGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcC-------CCCCeEEEeccCCCccccchh-hhhhh-cCCccCCccCCccc
Confidence 5799999988652 1122333 3468888999998 44444 68999999998765
No 146
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=41.79 E-value=5.6 Score=26.57 Aligned_cols=19 Identities=26% Similarity=0.704 Sum_probs=15.0
Q ss_pred Cceec-CCCCcchHHHHHHH
Q psy14827 181 PLVWG-QCSHCFHIHCIMKW 199 (220)
Q Consensus 181 ~~~~~-~CgHvFH~~CI~~W 199 (220)
..+.- .|||.|++.|-..|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34444 79999999998887
No 147
>PRK05978 hypothetical protein; Provisional
Probab=40.80 E-value=13 Score=30.61 Aligned_cols=25 Identities=16% Similarity=0.565 Sum_probs=20.8
Q ss_pred CCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 187 CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
=||+|+ .+|+. +..||.|..+|.+.
T Consensus 41 ~G~LF~-----g~Lkv---~~~C~~CG~~~~~~ 65 (148)
T PRK05978 41 EGKLFR-----AFLKP---VDHCAACGEDFTHH 65 (148)
T ss_pred CCcccc-----ccccc---CCCccccCCccccC
Confidence 356786 78898 99999999998775
No 148
>PRK11827 hypothetical protein; Provisional
Probab=40.71 E-value=11 Score=26.33 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=14.5
Q ss_pred HHHHHhCCCCCCCCCcCccccc
Q psy14827 197 MKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 197 ~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
++||.. --.||+|+.++.+
T Consensus 2 d~~LLe---ILaCP~ckg~L~~ 20 (60)
T PRK11827 2 DHRLLE---IIACPVCNGKLWY 20 (60)
T ss_pred ChHHHh---heECCCCCCcCeE
Confidence 456766 7789999988765
No 149
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=40.37 E-value=22 Score=26.76 Aligned_cols=32 Identities=41% Similarity=0.896 Sum_probs=21.8
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~ 198 (220)
..|.||.... ..++.|..+ .|...||..|...
T Consensus 56 ~~C~iC~~~~-G~~i~C~~~---------~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 56 LKCSICGKSG-GACIKCSHP---------GCSTAFHPTCARK 87 (110)
T ss_pred CcCcCCCCCC-ceeEEcCCC---------CCCcCCCHHHHHH
Confidence 5799999883 222333333 2899999999865
No 150
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.90 E-value=12 Score=22.62 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=12.9
Q ss_pred CCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 187 CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
|||+|-..- . ...||+|.+.
T Consensus 7 CGy~y~~~~------~---~~~CP~Cg~~ 26 (33)
T cd00350 7 CGYIYDGEE------A---PWVCPVCGAP 26 (33)
T ss_pred CCCEECCCc------C---CCcCcCCCCc
Confidence 676665332 2 5689999873
No 151
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=39.36 E-value=26 Score=37.15 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=36.8
Q ss_pred CcccccccccccccCCCCCCCCCCCCcee-cCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
...|-||=+++... . ++.+.|. ..|+---|..|. ..-+. +++..||-|+..++
T Consensus 15 ~~~c~iCGd~vg~~------~-~Ge~FVAC~eC~fpvCr~cy-eye~~-~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVK------E-DGQPFVACHVCGFPVCKPCY-EYERS-EGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcC------C-CCCEEEEeccCCCccccchh-hhhhh-cCCccCCccCCchh
Confidence 36799999998652 1 1223333 357777999998 44443 68999999998764
No 152
>KOG1819|consensus
Probab=38.51 E-value=29 Score=34.22 Aligned_cols=40 Identities=18% Similarity=0.443 Sum_probs=27.8
Q ss_pred ceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 148 ATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 148 ~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
..|+++.....|..|..+|..--.. -..-.||-+||..|-
T Consensus 893 pawipd~~a~~cmacq~pf~afrrr---------hhcrncggifcg~cs 932 (990)
T KOG1819|consen 893 PAWIPDEDAEQCMACQMPFNAFRRR---------HHCRNCGGIFCGKCS 932 (990)
T ss_pred cccCCCCcchhhhhccCcHHHHHHh---------hhhcccCceeecccc
Confidence 4588888889999999998651000 011239999999884
No 153
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=38.33 E-value=17 Score=25.43 Aligned_cols=18 Identities=22% Similarity=0.942 Sum_probs=12.2
Q ss_pred HHHhC---CCCCCCCCcCccc
Q psy14827 199 WLNSQ---QVHHQCPMCRQEW 216 (220)
Q Consensus 199 WL~~~---~~~~sCPvCR~e~ 216 (220)
|.+.+ ...+.||+|..+-
T Consensus 29 WmR~nFs~~~~p~CPlC~s~M 49 (59)
T PF14169_consen 29 WMRDNFSFEEEPVCPLCKSPM 49 (59)
T ss_pred ccccccccCCCccCCCcCCcc
Confidence 55542 2379999998753
No 154
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=38.04 E-value=9.9 Score=24.91 Aligned_cols=36 Identities=22% Similarity=0.624 Sum_probs=23.1
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
|+-|-..+... ..+...-|..||.+|+ .|=.|+..+
T Consensus 1 C~~C~~~I~~~-----------~~~~~~~~~~~H~~Cf-----------~C~~C~~~l 36 (58)
T PF00412_consen 1 CARCGKPIYGT-----------EIVIKAMGKFWHPECF-----------KCSKCGKPL 36 (58)
T ss_dssp BTTTSSBESSS-----------SEEEEETTEEEETTTS-----------BETTTTCBT
T ss_pred CCCCCCCccCc-----------EEEEEeCCcEEEcccc-----------ccCCCCCcc
Confidence 66777777542 2332237889998875 477777654
No 155
>PLN02400 cellulose synthase
Probab=37.32 E-value=22 Score=37.83 Aligned_cols=52 Identities=17% Similarity=0.454 Sum_probs=35.7
Q ss_pred cccccccccccccCCCCCCCCCCCCcee-cCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|-||=+++... . ++.+.|. ..|+---|..|- ..-+ +.++..||.|+..++
T Consensus 37 qiCqICGD~VG~t------~-dGe~FVAC~eCaFPVCRpCY-EYER-keGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVT------E-TGDVFVACNECAFPVCRPCY-EYER-KDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcC------C-CCCEEEEEccCCCccccchh-heec-ccCCccCcccCCccc
Confidence 5899999998652 1 1223332 357777999998 3333 368999999998764
No 156
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=35.02 E-value=35 Score=22.37 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=24.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN 201 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~ 201 (220)
..|.+|-..|..... ...--.||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~r---------k~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRR---------RHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCcc---------ccccCcCcCCcChHHcCCeee
Confidence 569999888865210 111224999999999876654
No 157
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.37 E-value=41 Score=24.59 Aligned_cols=25 Identities=32% Similarity=0.629 Sum_probs=18.7
Q ss_pred CCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 187 CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
=.|.||.+|...-| +..||-|--++
T Consensus 27 fEcTFCadCae~~l-----~g~CPnCGGel 51 (84)
T COG3813 27 FECTFCADCAENRL-----HGLCPNCGGEL 51 (84)
T ss_pred EeeehhHhHHHHhh-----cCcCCCCCchh
Confidence 34569999998654 45899997654
No 158
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=33.98 E-value=23 Score=23.44 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=8.1
Q ss_pred CCCCCCcCcc
Q psy14827 206 HHQCPMCRQE 215 (220)
Q Consensus 206 ~~sCPvCR~e 215 (220)
...||+|...
T Consensus 31 ~v~CPiC~~~ 40 (54)
T PF05605_consen 31 NVVCPICSSR 40 (54)
T ss_pred CccCCCchhh
Confidence 6789999764
No 159
>KOG1729|consensus
Probab=33.48 E-value=11 Score=34.20 Aligned_cols=62 Identities=16% Similarity=0.315 Sum_probs=38.8
Q ss_pred ccceecccCCCcccccccc-cccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC----CCCCCCCCcCccc
Q psy14827 146 GVATWRWVANDDTCGICRI-AFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ----QVHHQCPMCRQEW 216 (220)
Q Consensus 146 ~~~~~~~~~~~~~CaICLe-~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~----~~~~sCPvCR~e~ 216 (220)
....|.+|.+...|.+|-. .|..-...+ .--.||++||..|=..=+..+ .....|+.|-.++
T Consensus 158 ~~~~W~PD~ea~~C~~C~~~~Ftl~~RRH---------HCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 158 SAAVWLPDSEATECMVCGCTEFTLSERRH---------HCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred cCCcccCcccceecccCCCccccHHHHHH---------HHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 3567888888999999999 775411110 012499999999954412211 1234788885544
No 160
>PF15616 TerY-C: TerY-C metal binding domain
Probab=33.45 E-value=16 Score=29.48 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=30.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
.-|+-|-..+ ..++..||++||.+= ....+||-|.+...|.
T Consensus 78 PgCP~CGn~~--------------~fa~C~CGkl~Ci~g--------~~~~~CPwCg~~g~~~ 118 (131)
T PF15616_consen 78 PGCPHCGNQY--------------AFAVCGCGKLFCIDG--------EGEVTCPWCGNEGSFG 118 (131)
T ss_pred CCCCCCcChh--------------cEEEecCCCEEEeCC--------CCCEECCCCCCeeeec
Confidence 4699997776 456667999998332 2378999999877663
No 161
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=31.87 E-value=27 Score=25.15 Aligned_cols=32 Identities=41% Similarity=0.971 Sum_probs=22.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~ 198 (220)
..|.+|.... -..+.|..+ .|.-.||..|...
T Consensus 37 ~~C~~C~~~~-Ga~i~C~~~---------~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKG-GACIGCSHP---------GCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCC-CeEEEEeCC---------CCCcEEChHHHcc
Confidence 5899998773 233444443 4999999999753
No 162
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=31.04 E-value=25 Score=27.23 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
.+..|++|...|.-. .....+-..|+|.+|..|-.. ..+...-.|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l--------~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFL--------FNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCT--------STTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCccccc--------CCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 346899999988541 122344556999999998543 11111225777754
No 163
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=30.97 E-value=36 Score=26.28 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=22.4
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN 201 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~ 201 (220)
.|.||-.++..+. ..+-.=+-.-|++|+..=..
T Consensus 4 kC~iCg~~I~~gq-----------lFTF~~kG~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQ-----------LFTFTKKGPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecc-----------eEEEecCCcEeHHHHHHHHh
Confidence 5999999998742 22222335789999876543
No 164
>KOG1100|consensus
Probab=30.42 E-value=16 Score=31.50 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=24.1
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
|-+|-+.=. .+++++|.|+ +|..|=.. -..||+|+..
T Consensus 161 Cr~C~~~~~-------------~VlllPCrHl~lC~~C~~~-------~~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGEREA-------------TVLLLPCRHLCLCGICDES-------LRICPICRSP 198 (207)
T ss_pred ceecCcCCc-------------eEEeecccceEeccccccc-------CccCCCCcCh
Confidence 878865532 3555669996 55668432 4569999864
No 165
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.12 E-value=33 Score=30.91 Aligned_cols=11 Identities=18% Similarity=0.751 Sum_probs=8.0
Q ss_pred CCCCCCcCccc
Q psy14827 206 HHQCPMCRQEW 216 (220)
Q Consensus 206 ~~sCPvCR~e~ 216 (220)
...||.|+..|
T Consensus 269 p~~C~~Cgt~f 279 (279)
T TIGR00627 269 TPICKTCKTAF 279 (279)
T ss_pred CCCCCCCCCCC
Confidence 55788888754
No 166
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=29.76 E-value=41 Score=25.88 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=28.6
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.|--|-++++......-.-.+-.+-..+ ||+--|.-=+..+-. ...||.|+.+|+
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~ii-CGvC~~~LT~~EY~~----~~~Cp~C~spFN 91 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAII-CGVCRKLLTRAEYGM----CGSCPYCQSPFN 91 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEE-hhhhhhhhhHHHHhh----cCCCCCcCCCCC
Confidence 3566666666532211000111122223 776666555555543 456999999886
No 167
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=28.95 E-value=16 Score=23.45 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=26.9
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCCcC
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPMCR 213 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPvCR 213 (220)
|.||...-.+ +..+.=-.|+-.||..|+..=.... ...-.||.|+
T Consensus 2 C~vC~~~~~~----------~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDD----------GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTT----------SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCC----------CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 7888873222 2233334699999999987654320 1245677664
No 168
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=27.20 E-value=86 Score=21.73 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
.|-.|-.++... ..+.-+..-.| .||.+|...-|.. .||-|.-++
T Consensus 7 nCE~C~~dLp~~-------s~~A~ICSfEC--TFC~~C~e~~l~~-----~CPNCgGel 51 (57)
T PF06906_consen 7 NCECCDKDLPPD-------SPEAYICSFEC--TFCADCAETMLNG-----VCPNCGGEL 51 (57)
T ss_pred CccccCCCCCCC-------CCcceEEeEeC--cccHHHHHHHhcC-----cCcCCCCcc
Confidence 466665555331 00223444445 4999999987654 899998765
No 169
>KOG4185|consensus
Probab=26.85 E-value=13 Score=32.94 Aligned_cols=50 Identities=26% Similarity=0.483 Sum_probs=37.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecC-------CCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQ-------CSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~-------CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
..|.||...|.... ....|.+... |||-.+..|+..=+... ...||.||.
T Consensus 208 ~~c~ic~~~~~~n~------~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~--~~~cp~~~~ 264 (296)
T KOG4185|consen 208 KLCEICERIYSEND------EKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA--GIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHhhccc------cccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh--hhcCCcccc
Confidence 57999999998410 1122555555 99999999999998772 378999985
No 170
>KOG4443|consensus
Probab=25.44 E-value=36 Score=34.31 Aligned_cols=30 Identities=27% Similarity=0.821 Sum_probs=22.7
Q ss_pred cCCCCcchHHHHHHHHHhC--CCCCCCCCcCc
Q psy14827 185 GQCSHCFHIHCIMKWLNSQ--QVHHQCPMCRQ 214 (220)
Q Consensus 185 ~~CgHvFH~~CI~~WL~~~--~~~~sCPvCR~ 214 (220)
-.|+-.||..|+..|+.-. .+.-.||-||.
T Consensus 39 ~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 39 SDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 3599999999999999753 12345888875
No 171
>KOG0824|consensus
Probab=24.97 E-value=26 Score=32.13 Aligned_cols=46 Identities=28% Similarity=0.540 Sum_probs=36.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
..+.|-||.--+.. +...-.|.|.|+..|-..|... ...||.|+.-
T Consensus 104 ~~~~~~~~~g~l~v------------pt~~qg~w~qf~~~~p~~~~~~---~~~~~d~~~~ 149 (324)
T KOG0824|consen 104 DHDICYICYGKLTV------------PTRIQGCWHQFCYVCPKSNFAM---GNDCPDCRGK 149 (324)
T ss_pred CccceeeeeeeEEe------------cccccCceeeeeecCCchhhhh---hhccchhhcC
Confidence 34689999888866 2222239999999999999999 8999999864
No 172
>KOG2041|consensus
Probab=23.87 E-value=45 Score=34.44 Aligned_cols=27 Identities=37% Similarity=0.710 Sum_probs=21.5
Q ss_pred cCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 185 GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 185 ~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
+.|.|.-|.+=|.. .+.||+|.....|
T Consensus 1160 ~~CkH~a~~~EIs~-------y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1160 PRCKHRAHQHEISK-------YNCCPLCHSMESF 1186 (1189)
T ss_pred cccccccccccccc-------cccCccccChhhc
Confidence 46999999887753 7899999887665
No 173
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=23.51 E-value=68 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=21.5
Q ss_pred CCcchHHHHHHHHHhC------CCCCCCCCcCc
Q psy14827 188 SHCFHIHCIMKWLNSQ------QVHHQCPMCRQ 214 (220)
Q Consensus 188 gHvFH~~CI~~WL~~~------~~~~sCPvCR~ 214 (220)
.=.||..||..++.++ +.+-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 7779999999998762 34667999985
No 174
>KOG4021|consensus
Probab=23.41 E-value=36 Score=29.49 Aligned_cols=22 Identities=36% Similarity=0.786 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 193 IHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 193 ~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..||++--.. ..+-||+||.++
T Consensus 97 ktCIrkn~~~--~gnpCPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRF--LGNPCPICRDEY 118 (239)
T ss_pred hHHHhhcCee--cCCCCCccccce
Confidence 4678764331 267799999875
No 175
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=23.41 E-value=46 Score=26.72 Aligned_cols=20 Identities=25% Similarity=0.727 Sum_probs=15.9
Q ss_pred cCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 185 GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 185 ~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
.+|||+|+- -+..||.|..+
T Consensus 33 ~~CG~v~~P-----------Pr~~Cp~C~~~ 52 (140)
T COG1545 33 KKCGRVYFP-----------PRAYCPKCGSE 52 (140)
T ss_pred CCCCeEEcC-----------CcccCCCCCCC
Confidence 359999993 27789999886
No 176
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=23.35 E-value=27 Score=33.18 Aligned_cols=62 Identities=21% Similarity=0.500 Sum_probs=0.0
Q ss_pred Cccccccccccccc--CCCCCCC---CCCCCc-eecCCCCcchHHHHHHHHHhC------CCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGC--CSDCKLP---GDDCPL-VWGQCSHCFHIHCIMKWLNSQ------QVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~--~~~~~~p---~~~~~~-~~~~CgHvFH~~CI~~WL~~~------~~~~sCPvCR~e~~ 217 (220)
...|++|+..=.-- ...++.. +.+.|. +...|||+--.....-|-+.. ..+..||.|-..+.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 68999999653220 0000000 111121 234599999999999998762 34689999976543
No 177
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.23 E-value=53 Score=22.18 Aligned_cols=49 Identities=24% Similarity=0.588 Sum_probs=20.9
Q ss_pred cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcC
Q psy14827 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213 (220)
Q Consensus 159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR 213 (220)
|--|+..|...... ..+.....-..|++.|+.+| +-.+- +.=.+||-|-
T Consensus 2 CfgC~~~~~~~~~~---~~~~~~y~C~~C~~~FC~dC-D~fiH--E~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEK---KADSSRYRCPKCKNHFCIDC-DVFIH--ETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS----------EEE--TTTT--B-HHH-HHTTT--TTS-SSSTT-
T ss_pred CccCCCCCCCcccc---cccCCeEECCCCCCccccCc-Chhhh--ccccCCcCCC
Confidence 55677777652000 00011234457999999999 22322 2356788873
No 178
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=23.18 E-value=80 Score=28.58 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=26.3
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM 211 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv 211 (220)
..|.||+|--.++.....+. .. =+=.=|.+|+.+|=... +..||-
T Consensus 31 sfChiCfEl~iegvpks~ll----Ht----kSlRGHrdCFEK~HlIa--nQ~~pr 75 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLL----HT----KSLRGHRDCFEKYHLIA--NQDCPR 75 (285)
T ss_pred eecceeeccccccCcccccc----cc----ccccchHHHHHHHHHHH--cCCCCc
Confidence 45888887765542211111 00 11134899999997663 778883
No 179
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=23.08 E-value=40 Score=19.35 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=7.6
Q ss_pred CCCCCcCccc
Q psy14827 207 HQCPMCRQEW 216 (220)
Q Consensus 207 ~sCPvCR~e~ 216 (220)
..||+|.+.+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3699998764
No 180
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=22.46 E-value=49 Score=21.93 Aligned_cols=22 Identities=23% Similarity=0.687 Sum_probs=12.1
Q ss_pred CCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 187 CSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 187 CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
|||.|-.. |..-... ...||.|
T Consensus 34 Cgh~w~~~-v~~R~~~---~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRR---GKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccC---CCCCCCC
Confidence 66665543 2222233 7789988
No 181
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.19 E-value=50 Score=27.84 Aligned_cols=14 Identities=21% Similarity=0.696 Sum_probs=11.8
Q ss_pred CCCCCCCCcCcccc
Q psy14827 204 QVHHQCPMCRQEWK 217 (220)
Q Consensus 204 ~~~~sCPvCR~e~~ 217 (220)
.|++.||+|..+++
T Consensus 152 AGRP~CPlCg~PlD 165 (171)
T PF11290_consen 152 AGRPPCPLCGEPLD 165 (171)
T ss_pred CCCCCCCCCCCCCC
Confidence 47999999998764
No 182
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.31 E-value=14 Score=23.55 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=13.6
Q ss_pred CCCcchHHH-HHHHHHhCCCCCCCCCcCc
Q psy14827 187 CSHCFHIHC-IMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 187 CgHvFH~~C-I~~WL~~~~~~~sCPvCR~ 214 (220)
|||.|-..- |.. .....||.|..
T Consensus 11 Cg~~fe~~~~~~~-----~~~~~CP~Cg~ 34 (42)
T PF09723_consen 11 CGHEFEVLQSISE-----DDPVPCPECGS 34 (42)
T ss_pred CCCEEEEEEEcCC-----CCCCcCCCCCC
Confidence 777776332 111 12678999987
No 183
>COG5595 Zn-ribbon-containing, possibly nucleic-acid-binding protein [General function prediction only]
Probab=20.55 E-value=45 Score=29.03 Aligned_cols=16 Identities=31% Similarity=1.010 Sum_probs=13.7
Q ss_pred CCCCCCCcCccccccC
Q psy14827 205 VHHQCPMCRQEWKFKE 220 (220)
Q Consensus 205 ~~~sCPvCR~e~~~~~ 220 (220)
...-||-|..+|.|++
T Consensus 217 k~r~CPsC~k~Wqlk~ 232 (256)
T COG5595 217 KYRCCPSCGKDWQLKN 232 (256)
T ss_pred ccCCCCcccccceecc
Confidence 3667999999999985
No 184
>KOG2807|consensus
Probab=20.34 E-value=94 Score=29.01 Aligned_cols=48 Identities=19% Similarity=0.523 Sum_probs=29.9
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
.+..|-.|...... ....+-..|.|+||.+|= ..+-+ .=..||-|.+.
T Consensus 329 ~~~~Cf~C~~~~~~----------~~~y~C~~Ck~~FCldCD-v~iHe--sLh~CpgCeh~ 376 (378)
T KOG2807|consen 329 GSRFCFACQGELLS----------SGRYRCESCKNVFCLDCD-VFIHE--SLHNCPGCEHK 376 (378)
T ss_pred CCcceeeeccccCC----------CCcEEchhccceeeccch-HHHHh--hhhcCCCcCCC
Confidence 34568888555433 113444569999999993 33322 25579999753
No 185
>KOG1701|consensus
Probab=20.31 E-value=11 Score=36.14 Aligned_cols=27 Identities=15% Similarity=0.519 Sum_probs=16.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
++|..|-+.+.+ .++.. ||.+||-.|+
T Consensus 335 ekC~~Cg~~I~d------------~iLrA-~GkayHp~CF 361 (468)
T KOG1701|consen 335 EKCNKCGEPIMD------------RILRA-LGKAYHPGCF 361 (468)
T ss_pred HHHhhhhhHHHH------------HHHHh-cccccCCCce
Confidence 466666666655 23333 7777887775
Done!