Query psy14827
Match_columns 220
No_of_seqs 195 out of 1728
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:49:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dpl_R Ring-box protein 1; ubi 99.9 1.9E-22 6.4E-27 154.8 3.9 85 133-220 14-103 (106)
2 4a0k_B E3 ubiquitin-protein li 99.8 1.4E-22 4.7E-27 158.3 0.5 83 135-220 27-114 (117)
3 2ecl_A Ring-box protein 2; RNF 99.8 8.9E-20 3.1E-24 132.6 2.9 74 143-219 2-77 (81)
4 1v87_A Deltex protein 2; ring- 99.5 2E-14 7E-19 109.4 5.8 65 155-219 24-95 (114)
5 2kiz_A E3 ubiquitin-protein li 99.5 2.1E-14 7.2E-19 100.1 5.1 51 155-218 13-63 (69)
6 1iym_A EL5; ring-H2 finger, ub 99.5 9.8E-15 3.4E-19 97.3 3.0 51 155-217 4-54 (55)
7 2ecm_A Ring finger and CHY zin 99.5 2.5E-14 8.5E-19 95.2 4.3 50 155-216 4-53 (55)
8 1x4j_A Ring finger protein 38; 99.5 1.3E-14 4.4E-19 103.0 3.0 50 155-217 22-71 (75)
9 2ep4_A Ring finger protein 24; 99.5 3.3E-14 1.1E-18 100.4 4.6 50 155-217 14-63 (74)
10 2l0b_A E3 ubiquitin-protein li 99.5 3.1E-14 1.1E-18 105.1 4.5 50 155-217 39-88 (91)
11 2ect_A Ring finger protein 126 99.4 3.1E-14 1.1E-18 101.4 3.4 52 155-219 14-65 (78)
12 3ng2_A RNF4, snurf, ring finge 99.4 3.9E-14 1.3E-18 98.8 3.6 56 155-219 9-64 (71)
13 2ea6_A Ring finger protein 4; 99.4 6.6E-14 2.3E-18 96.8 3.7 55 155-218 14-68 (69)
14 2xeu_A Ring finger protein 4; 99.4 6.7E-14 2.3E-18 95.4 3.4 55 156-219 3-57 (64)
15 1chc_A Equine herpes virus-1 r 99.4 8E-14 2.7E-18 96.7 3.7 48 155-217 4-51 (68)
16 2djb_A Polycomb group ring fin 99.4 1.6E-13 5.5E-18 96.6 4.7 49 156-219 15-63 (72)
17 2ct0_A Non-SMC element 1 homol 99.4 1.6E-13 5.3E-18 98.9 3.8 53 155-220 14-66 (74)
18 2d8s_A Cellular modulator of i 99.3 3.9E-13 1.3E-17 97.9 3.3 54 155-220 14-72 (80)
19 2d8t_A Dactylidin, ring finger 99.3 2.7E-13 9.2E-18 95.2 2.3 48 155-218 14-61 (71)
20 2ysl_A Tripartite motif-contai 99.3 9.8E-13 3.3E-17 92.2 3.8 52 155-219 19-70 (73)
21 3lrq_A E3 ubiquitin-protein li 99.3 9.7E-13 3.3E-17 98.6 3.5 48 156-218 22-70 (100)
22 2yur_A Retinoblastoma-binding 99.3 1.3E-12 4.5E-17 92.6 3.7 49 156-217 15-63 (74)
23 2ecy_A TNF receptor-associated 99.3 1.6E-12 5.3E-17 89.9 4.0 49 156-219 15-63 (66)
24 2ct2_A Tripartite motif protei 99.3 3E-12 1E-16 92.5 5.4 54 156-218 15-68 (88)
25 2csy_A Zinc finger protein 183 99.3 2.1E-12 7.3E-17 92.7 4.1 46 156-217 15-60 (81)
26 4ayc_A E3 ubiquitin-protein li 99.3 1.4E-12 4.8E-17 103.0 2.8 45 157-217 54-98 (138)
27 2y43_A E3 ubiquitin-protein li 99.3 2.3E-12 7.7E-17 95.9 3.4 46 157-217 23-68 (99)
28 4ap4_A E3 ubiquitin ligase RNF 99.2 2.5E-12 8.5E-17 98.9 3.3 55 155-218 6-60 (133)
29 1g25_A CDK-activating kinase a 99.2 5.5E-12 1.9E-16 86.9 4.4 53 156-219 3-56 (65)
30 2ckl_A Polycomb group ring fin 99.2 4E-12 1.4E-16 96.1 3.5 47 156-217 15-61 (108)
31 1t1h_A Gspef-atpub14, armadill 99.2 5.9E-12 2E-16 89.5 4.0 49 155-218 7-55 (78)
32 2ysj_A Tripartite motif-contai 99.2 1.5E-11 5E-16 84.1 4.7 45 155-212 19-63 (63)
33 3ztg_A E3 ubiquitin-protein li 99.2 1.3E-11 4.4E-16 90.3 4.7 49 155-216 12-60 (92)
34 2ecn_A Ring finger protein 141 99.2 1.6E-12 5.6E-17 90.6 -0.5 47 155-218 14-60 (70)
35 2ecw_A Tripartite motif-contai 99.2 2.2E-11 7.4E-16 87.0 5.1 50 156-218 19-71 (85)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 9.2E-12 3.2E-16 95.7 3.2 56 154-218 70-125 (133)
37 2ckl_B Ubiquitin ligase protei 99.2 1.4E-11 4.8E-16 99.7 3.9 47 157-217 55-101 (165)
38 1jm7_A BRCA1, breast cancer ty 99.1 2.2E-11 7.5E-16 91.8 3.9 49 157-218 22-70 (112)
39 2ecv_A Tripartite motif-contai 99.1 2.8E-11 9.4E-16 86.4 4.2 50 156-218 19-71 (85)
40 3fl2_A E3 ubiquitin-protein li 99.1 1.9E-11 6.7E-16 94.4 3.4 46 157-217 53-98 (124)
41 2egp_A Tripartite motif-contai 99.1 8.8E-12 3E-16 88.4 1.1 51 155-218 11-65 (79)
42 2ecj_A Tripartite motif-contai 99.1 3.2E-11 1.1E-15 80.6 2.9 45 155-212 14-58 (58)
43 1z6u_A NP95-like ring finger p 99.0 7.5E-11 2.6E-15 94.8 3.4 48 156-218 78-125 (150)
44 3hct_A TNF receptor-associated 99.0 7.1E-11 2.4E-15 90.7 2.8 48 156-218 18-65 (118)
45 1rmd_A RAG1; V(D)J recombinati 99.0 1.3E-10 4.4E-15 88.7 3.5 48 156-218 23-70 (116)
46 2kr4_A Ubiquitin conjugation f 99.0 2E-10 6.8E-15 83.9 3.8 48 155-218 13-60 (85)
47 3l11_A E3 ubiquitin-protein li 99.0 5.3E-11 1.8E-15 90.7 0.6 46 157-217 16-61 (115)
48 2kre_A Ubiquitin conjugation f 98.9 3.4E-10 1.2E-14 85.3 3.3 48 155-218 28-75 (100)
49 1wgm_A Ubiquitin conjugation f 98.9 3.6E-10 1.2E-14 84.8 3.4 48 155-218 21-69 (98)
50 2vje_A E3 ubiquitin-protein li 98.9 3E-10 1E-14 78.7 2.7 48 155-217 7-56 (64)
51 3knv_A TNF receptor-associated 98.9 1.4E-10 4.9E-15 92.4 1.1 49 155-218 30-78 (141)
52 1e4u_A Transcriptional repress 98.9 4.4E-10 1.5E-14 81.1 3.5 52 155-217 10-61 (78)
53 2y1n_A E3 ubiquitin-protein li 98.9 5.1E-10 1.7E-14 102.8 4.3 46 157-217 333-378 (389)
54 1jm7_B BARD1, BRCA1-associated 98.9 1.7E-10 5.9E-15 88.4 0.5 46 156-218 22-67 (117)
55 1vyx_A ORF K3, K3RING; zinc-bi 98.9 1E-09 3.6E-14 75.5 3.8 52 155-219 5-60 (60)
56 2yu4_A E3 SUMO-protein ligase 98.9 1.2E-09 4.1E-14 81.0 3.7 48 156-215 7-59 (94)
57 2vje_B MDM4 protein; proto-onc 98.8 9.9E-10 3.4E-14 75.8 2.5 47 156-217 7-55 (63)
58 1bor_A Transcription factor PM 98.8 5.2E-10 1.8E-14 75.3 0.7 44 156-218 6-49 (56)
59 2c2l_A CHIP, carboxy terminus 98.8 2.1E-09 7.2E-14 92.0 3.1 48 155-217 207-254 (281)
60 3hcs_A TNF receptor-associated 98.7 3.3E-09 1.1E-13 85.9 2.8 49 155-218 17-65 (170)
61 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.5E-09 8.4E-14 96.9 1.7 58 155-217 307-372 (381)
62 4ic3_A E3 ubiquitin-protein li 98.7 2.5E-09 8.5E-14 75.8 0.8 41 157-217 25-66 (74)
63 3htk_C E3 SUMO-protein ligase 98.6 9.6E-09 3.3E-13 89.9 2.4 51 155-218 180-232 (267)
64 2f42_A STIP1 homology and U-bo 98.6 1.8E-08 6.3E-13 83.5 3.7 49 155-218 105-153 (179)
65 2bay_A PRE-mRNA splicing facto 98.6 1.8E-08 6E-13 69.4 2.5 47 157-218 4-50 (61)
66 2ecg_A Baculoviral IAP repeat- 98.6 2.2E-08 7.5E-13 70.9 2.8 41 157-217 26-67 (75)
67 2ea5_A Cell growth regulator w 98.5 5E-08 1.7E-12 68.3 3.2 43 155-217 14-57 (68)
68 1wim_A KIAA0161 protein; ring 98.4 9.6E-08 3.3E-12 70.2 2.0 50 156-215 5-61 (94)
69 2yho_A E3 ubiquitin-protein li 98.3 8.2E-08 2.8E-12 69.1 0.9 41 157-217 19-60 (79)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.2E-07 7.7E-12 84.0 0.2 43 155-217 294-337 (345)
71 3nw0_A Non-structural maintena 98.2 9.1E-07 3.1E-11 76.2 3.6 52 155-219 179-230 (238)
72 3vk6_A E3 ubiquitin-protein li 98.1 2E-06 6.7E-11 64.9 3.1 49 158-220 3-51 (101)
73 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.019 6.6E-07 41.8 1.9 33 157-200 4-38 (101)
74 2lri_C Autoimmune regulator; Z 90.0 0.12 4.3E-06 35.5 1.7 47 156-215 12-59 (66)
75 1z2q_A LM5-1; membrane protein 85.2 0.51 1.7E-05 33.6 2.6 43 147-198 12-54 (84)
76 2ko5_A Ring finger protein Z; 83.4 0.37 1.3E-05 35.8 1.1 44 157-217 29-72 (99)
77 1weu_A Inhibitor of growth fam 79.8 1.9 6.5E-05 31.4 3.9 48 157-216 37-86 (91)
78 2yw8_A RUN and FYVE domain-con 79.4 0.63 2.2E-05 32.9 1.2 42 148-198 11-52 (82)
79 1joc_A EEA1, early endosomal a 78.9 0.63 2.2E-05 35.7 1.1 41 149-198 62-102 (125)
80 1x4u_A Zinc finger, FYVE domai 77.5 0.77 2.6E-05 32.6 1.2 42 147-197 5-46 (84)
81 2yt5_A Metal-response element- 76.7 0.18 6.2E-06 34.0 -2.3 53 155-215 5-61 (66)
82 1f62_A Transcription factor WS 75.5 1.1 3.7E-05 28.6 1.4 47 158-214 2-49 (51)
83 2lbm_A Transcriptional regulat 75.3 2.5 8.5E-05 33.3 3.7 50 153-215 60-117 (142)
84 2puy_A PHD finger protein 21A; 75.3 0.14 4.7E-06 34.2 -3.2 50 154-216 3-53 (60)
85 3t7l_A Zinc finger FYVE domain 75.3 0.94 3.2E-05 32.7 1.1 42 149-199 13-54 (90)
86 2l5u_A Chromodomain-helicase-D 75.0 1.1 3.8E-05 29.9 1.4 48 155-215 10-58 (61)
87 3i2d_A E3 SUMO-protein ligase 74.3 2.7 9.1E-05 38.2 4.1 50 157-219 250-301 (371)
88 1wil_A KIAA1045 protein; ring 73.6 2.4 8.3E-05 30.7 2.9 34 155-199 14-47 (89)
89 1mm2_A MI2-beta; PHD, zinc fin 73.0 0.37 1.3E-05 32.3 -1.5 48 155-215 8-56 (61)
90 1weo_A Cellulose synthase, cat 72.6 6.9 0.00023 28.6 5.1 53 157-217 17-69 (93)
91 4fo9_A E3 SUMO-protein ligase 71.8 3.3 0.00011 37.4 4.1 50 157-219 216-267 (360)
92 1fp0_A KAP-1 corepressor; PHD 70.0 0.87 3E-05 33.1 -0.1 53 154-219 23-76 (88)
93 3m62_A Ubiquitin conjugation f 70.0 2.8 9.7E-05 42.4 3.5 48 154-217 889-937 (968)
94 2ysm_A Myeloid/lymphoid or mix 69.1 0.89 3.1E-05 33.6 -0.2 38 154-201 5-42 (111)
95 3ql9_A Transcriptional regulat 68.3 6.2 0.00021 30.5 4.4 49 154-215 55-111 (129)
96 2yql_A PHD finger protein 21A; 67.8 0.26 9E-06 32.4 -3.1 48 154-214 7-55 (56)
97 2k16_A Transcription initiatio 66.7 0.8 2.7E-05 31.6 -0.9 51 157-217 19-70 (75)
98 3mpx_A FYVE, rhogef and PH dom 65.8 1.3 4.3E-05 39.8 0.0 61 147-216 366-430 (434)
99 1y02_A CARP2, FYVE-ring finger 65.1 0.44 1.5E-05 36.6 -2.7 51 150-212 13-63 (120)
100 2e6r_A Jumonji/ARID domain-con 64.2 0.31 1.1E-05 35.5 -3.6 50 155-214 15-65 (92)
101 1x64_A Alpha-actinin-2 associa 63.3 11 0.00038 26.1 4.7 27 157-196 26-52 (89)
102 2vpb_A Hpygo1, pygopus homolog 63.1 4.1 0.00014 27.6 2.2 34 155-197 7-41 (65)
103 1wd2_A Ariadne-1 protein homol 62.3 1.1 3.7E-05 30.1 -0.9 38 157-202 7-47 (60)
104 1wen_A Inhibitor of growth fam 60.8 3 0.0001 28.7 1.2 28 187-216 37-66 (71)
105 1wep_A PHF8; structural genomi 60.5 4.4 0.00015 28.1 2.1 49 157-215 13-63 (79)
106 2gmg_A Hypothetical protein PF 58.8 1.5 5E-05 33.0 -0.8 24 186-217 72-95 (105)
107 2o35_A Hypothetical protein DU 57.2 4.3 0.00015 30.2 1.6 12 191-202 43-54 (105)
108 3fyb_A Protein of unknown func 56.5 4.5 0.00015 30.1 1.6 12 191-202 42-53 (104)
109 1wev_A Riken cDNA 1110020M19; 55.6 0.68 2.3E-05 33.3 -3.0 52 156-215 16-72 (88)
110 1xwh_A Autoimmune regulator; P 55.6 0.86 3E-05 30.9 -2.3 47 155-214 7-54 (66)
111 2dar_A PDZ and LIM domain prot 54.5 6.9 0.00023 27.3 2.3 11 157-167 26-36 (90)
112 2lv9_A Histone-lysine N-methyl 53.3 2.3 7.9E-05 31.0 -0.5 47 157-214 29-75 (98)
113 2cs3_A Protein C14ORF4, MY039 51.5 15 0.0005 26.5 3.5 37 157-202 16-52 (93)
114 3lqh_A Histone-lysine N-methyl 50.4 3.9 0.00013 33.4 0.4 53 157-215 3-63 (183)
115 1we9_A PHD finger family prote 49.1 4.9 0.00017 26.6 0.7 52 155-215 5-58 (64)
116 3v43_A Histone acetyltransfera 48.6 25 0.00085 25.8 4.7 38 156-197 5-42 (112)
117 2ri7_A Nucleosome-remodeling f 45.2 4.9 0.00017 31.7 0.2 49 156-214 8-58 (174)
118 3ask_A E3 ubiquitin-protein li 45.0 3.3 0.00011 35.0 -0.8 31 185-215 193-225 (226)
119 2kwj_A Zinc finger protein DPF 44.7 6.7 0.00023 29.2 0.9 39 157-199 2-41 (114)
120 2l43_A N-teminal domain from h 44.6 3.2 0.00011 29.7 -0.9 52 155-215 24-75 (88)
121 2zet_C Melanophilin; complex, 43.3 9.9 0.00034 30.1 1.7 34 155-196 67-100 (153)
122 1vfy_A Phosphatidylinositol-3- 42.7 8.7 0.0003 26.2 1.2 32 157-197 12-43 (73)
123 3c6w_A P28ING5, inhibitor of g 42.7 2.6 8.9E-05 28.0 -1.5 26 187-214 30-57 (59)
124 1dvp_A HRS, hepatocyte growth 41.4 7.2 0.00024 32.1 0.7 33 156-197 161-193 (220)
125 3zyq_A Hepatocyte growth facto 41.2 7.6 0.00026 32.3 0.8 34 156-198 164-197 (226)
126 1zfo_A LAsp-1; LIM domain, zin 40.8 9.3 0.00032 21.8 0.9 28 157-196 4-31 (31)
127 2ku3_A Bromodomain-containing 40.2 19 0.00065 24.6 2.6 52 154-214 14-65 (71)
128 1x62_A C-terminal LIM domain p 39.7 12 0.0004 25.4 1.5 36 157-216 16-51 (79)
129 2xb1_A Pygopus homolog 2, B-ce 39.1 9.2 0.00032 28.2 0.9 52 157-217 4-63 (105)
130 2d8x_A Protein pinch; LIM doma 39.0 11 0.00039 24.6 1.3 12 157-168 6-17 (70)
131 1wfk_A Zinc finger, FYVE domai 38.8 8.5 0.00029 27.5 0.6 34 156-198 9-42 (88)
132 2cu8_A Cysteine-rich protein 2 38.7 9.4 0.00032 25.5 0.8 37 157-216 10-46 (76)
133 3a1b_A DNA (cytosine-5)-methyl 37.4 20 0.00067 28.7 2.6 17 186-202 98-114 (159)
134 2kpi_A Uncharacterized protein 35.6 3.2 0.00011 27.4 -1.9 19 198-219 5-23 (56)
135 2jmo_A Parkin; IBR, E3 ligase, 35.6 4 0.00014 28.5 -1.5 14 186-199 55-68 (80)
136 2jny_A Uncharacterized BCR; st 35.5 4.8 0.00017 27.6 -1.1 20 197-219 4-23 (67)
137 2co8_A NEDD9 interacting prote 35.3 14 0.00049 25.2 1.4 28 157-196 16-43 (82)
138 2vnf_A ING 4, P29ING4, inhibit 35.3 3.8 0.00013 27.2 -1.6 26 187-214 31-58 (60)
139 3shb_A E3 ubiquitin-protein li 34.3 3.3 0.00011 29.1 -2.2 30 186-215 46-77 (77)
140 1wyh_A SLIM 2, skeletal muscle 34.3 15 0.00052 24.0 1.3 29 157-196 6-34 (72)
141 2kgg_A Histone demethylase jar 33.7 7.7 0.00026 24.7 -0.3 47 158-213 4-52 (52)
142 2cur_A Skeletal muscle LIM-pro 33.4 15 0.00052 23.9 1.2 12 157-168 6-17 (69)
143 1zbd_B Rabphilin-3A; G protein 32.7 14 0.00046 28.6 1.0 34 155-196 54-87 (134)
144 1m3v_A FLIN4, fusion of the LI 32.5 30 0.001 25.3 2.9 12 157-168 6-17 (122)
145 2l4z_A DNA endonuclease RBBP8, 32.3 11 0.00037 28.3 0.3 37 157-216 62-98 (123)
146 2d8z_A Four and A half LIM dom 32.2 19 0.00064 23.4 1.5 12 157-168 6-17 (70)
147 2lq6_A Bromodomain-containing 32.1 33 0.0011 24.3 2.9 33 157-198 18-50 (87)
148 2cor_A Pinch protein; LIM doma 31.7 17 0.00058 24.6 1.3 36 157-216 16-51 (79)
149 1x4k_A Skeletal muscle LIM-pro 31.4 15 0.00051 24.0 0.9 29 157-196 6-34 (72)
150 2e6s_A E3 ubiquitin-protein li 31.0 7.6 0.00026 27.1 -0.7 29 186-214 46-76 (77)
151 1nyp_A Pinch protein; LIM doma 30.3 14 0.00049 23.8 0.6 36 157-216 6-41 (66)
152 2dj7_A Actin-binding LIM prote 29.9 18 0.00061 24.7 1.1 37 157-216 16-52 (80)
153 1x61_A Thyroid receptor intera 29.6 19 0.00066 23.5 1.2 11 157-167 6-16 (72)
154 2g6q_A Inhibitor of growth pro 29.1 5.9 0.0002 26.5 -1.5 27 187-215 32-60 (62)
155 1wig_A KIAA1808 protein; LIM d 29.0 24 0.00081 23.5 1.6 12 157-168 6-17 (73)
156 1v6g_A Actin binding LIM prote 28.6 18 0.00063 24.3 1.0 36 157-216 16-51 (81)
157 2dlo_A Thyroid receptor-intera 28.2 17 0.00058 24.5 0.7 27 157-196 16-42 (81)
158 1g47_A Pinch protein; LIM doma 27.9 19 0.00065 23.8 0.9 39 156-216 11-49 (77)
159 1x63_A Skeletal muscle LIM-pro 27.8 22 0.00077 23.8 1.3 38 157-216 16-53 (82)
160 2pv0_B DNA (cytosine-5)-methyl 27.6 34 0.0012 31.1 2.8 29 186-214 112-147 (386)
161 1x4l_A Skeletal muscle LIM-pro 27.4 23 0.00078 23.2 1.3 40 157-216 6-45 (72)
162 3fbi_A Mediator of RNA polymer 27.3 25 0.00085 25.2 1.5 21 48-68 61-81 (84)
163 1x6a_A LIMK-2, LIM domain kina 27.2 18 0.00062 24.3 0.7 12 157-168 16-27 (81)
164 2d8y_A Eplin protein; LIM doma 26.9 24 0.00081 24.4 1.3 12 157-168 16-27 (91)
165 3asl_A E3 ubiquitin-protein li 25.8 7.4 0.00025 26.6 -1.5 30 186-215 38-69 (70)
166 1iml_A CRIP, cysteine rich int 25.3 15 0.00051 24.5 -0.0 14 155-168 26-39 (76)
167 2ct7_A Ring finger protein 31; 25.2 7 0.00024 27.5 -1.8 20 182-201 44-63 (86)
168 2l3k_A Rhombotin-2, linker, LI 24.5 21 0.00071 26.3 0.7 11 158-168 10-20 (123)
169 1x68_A FHL5 protein; four-and- 24.5 21 0.00073 23.7 0.7 40 157-216 6-45 (76)
170 1a7i_A QCRP2 (LIM1); LIM domai 24.3 11 0.00038 25.5 -0.9 28 157-196 8-35 (81)
171 1wem_A Death associated transc 24.0 46 0.0016 22.5 2.4 48 157-215 17-70 (76)
172 4gne_A Histone-lysine N-methyl 23.7 17 0.00058 27.0 0.0 44 154-213 13-60 (107)
173 3o70_A PHD finger protein 13; 23.6 7.7 0.00026 26.4 -1.7 47 157-214 20-66 (68)
174 1j2o_A FLIN2, fusion of rhombo 22.7 35 0.0012 24.6 1.6 11 188-198 52-62 (114)
175 3f6q_B LIM and senescent cell 22.0 36 0.0012 21.8 1.4 39 156-216 11-49 (72)
176 1z60_A TFIIH basal transcripti 22.0 23 0.0008 23.5 0.5 43 157-212 16-58 (59)
177 3mjh_B Early endosome antigen 21.5 25 0.00084 20.9 0.4 10 207-216 6-15 (34)
178 2cuq_A Four and A half LIM dom 21.4 31 0.0011 23.0 1.0 27 157-196 16-42 (80)
179 1x3h_A Leupaxin; paxillin fami 21.3 27 0.00092 23.3 0.7 27 157-196 16-42 (80)
180 2jvx_A NF-kappa-B essential mo 20.7 22 0.00074 20.3 0.1 10 206-215 3-12 (28)
No 1
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.85 E-value=1.9e-22 Score=154.82 Aligned_cols=85 Identities=34% Similarity=0.982 Sum_probs=73.3
Q ss_pred ccCCCCCccccccccceecccCCCcccccccccccccCCCCC-----CCCCCCCceecCCCCcchHHHHHHHHHhCCCCC
Q psy14827 133 SKATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCK-----LPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHH 207 (220)
Q Consensus 133 s~~~~~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~-----~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~ 207 (220)
....+++.+++|++++.|+|+..++.|+||++.|++.+..|+ .++++++++++.|||+||.+||..||.. +.
T Consensus 14 ~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~ 90 (106)
T 3dpl_R 14 GAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQ 90 (106)
T ss_dssp ---CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---CS
T ss_pred ccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---CC
Confidence 345678999999999999999999999999999999887766 3667788999999999999999999999 99
Q ss_pred CCCCcCccccccC
Q psy14827 208 QCPMCRQEWKFKE 220 (220)
Q Consensus 208 sCPvCR~e~~~~~ 220 (220)
+||+||++|.|++
T Consensus 91 ~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 91 VCPLDNREWEFQK 103 (106)
T ss_dssp BCSSSCSBCCEEE
T ss_pred cCcCCCCcceeec
Confidence 9999999999873
No 2
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.84 E-value=1.4e-22 Score=158.29 Aligned_cols=83 Identities=35% Similarity=1.002 Sum_probs=19.8
Q ss_pred CCCCCccccccccceecccCCCcccccccccccccCCCCCCC-----CCCCCceecCCCCcchHHHHHHHHHhCCCCCCC
Q psy14827 135 ATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQC 209 (220)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p-----~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sC 209 (220)
..++|++++|.+++.|+|+..++.|+||++.|++.++.|+.+ +++++++++.|+|+||.+||..||.. +.+|
T Consensus 27 ~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---~~~C 103 (117)
T 4a0k_B 27 GKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVC 103 (117)
T ss_dssp -CCSEEEEEEEEEEEEEECCCC----------------------------------------------------------
T ss_pred cCCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---CCcC
Confidence 457899999999999999999999999999999999888875 67788888899999999999999999 9999
Q ss_pred CCcCccccccC
Q psy14827 210 PMCRQEWKFKE 220 (220)
Q Consensus 210 PvCR~e~~~~~ 220 (220)
|+||++|.|+.
T Consensus 104 P~Cr~~~~~~k 114 (117)
T 4a0k_B 104 PLDNREWEFQK 114 (117)
T ss_dssp -----------
T ss_pred CCCCCeeeeec
Confidence 99999999973
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.9e-20 Score=132.64 Aligned_cols=74 Identities=35% Similarity=1.066 Sum_probs=62.5
Q ss_pred cccccceecccCCCcccccccccccccCCCCCCC--CCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 143 GWTGVATWRWVANDDTCGICRIAFEGCCSDCKLP--GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 143 ~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p--~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
.+.+++.|+|+.+++.|+||++.|.+.+..+..+ +++.+++++.|||+||.+||..||.. +.+||+||++|.++
T Consensus 2 ~~~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 2 SSGSSGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCCCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---CCBCTTTCCBCCEE
T ss_pred CcceeEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---CCCCCCcCCCcchh
Confidence 3567899999999999999999998865554433 34556777789999999999999999 88999999999876
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=2e-14 Score=109.40 Aligned_cols=65 Identities=23% Similarity=0.486 Sum_probs=46.0
Q ss_pred CCcccccccccccccCCCCCCC-----CCCCCceecCCCCcchHHHHHHHHHhC--CCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMKWLNSQ--QVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p-----~~~~~~~~~~CgHvFH~~CI~~WL~~~--~~~~sCPvCR~e~~~~ 219 (220)
.+..|+|||+.|.+.......+ .....+.++.|||+||..||..||... ..+.+||+||+.|..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999998754322211 111234467899999999999999531 1278999999988754
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=100.05 Aligned_cols=51 Identities=29% Similarity=0.738 Sum_probs=42.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
.+..|+||++.|..+ ...+.+.|||+||..||..|+.. +.+||+||++|..
T Consensus 13 ~~~~C~IC~~~~~~~----------~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEG----------EDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSS----------SCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCC----------CcEEEeCCCCHHHHHHHHHHHHc---CCCCcCcCccccC
Confidence 346899999999652 24555669999999999999999 8899999998864
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.49 E-value=9.8e-15 Score=97.29 Aligned_cols=51 Identities=31% Similarity=0.791 Sum_probs=41.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
++..|+||++.|..+ +.+..++.|||+||..||..|++. +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~---------~~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDG---------EEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTT---------SCCEECSSSCCEECTTHHHHTTTT---CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCC---------CceEECCCCCCcccHHHHHHHHHc---CCcCcCCCCEeE
Confidence 346899999999763 223444459999999999999998 899999999874
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.47 E-value=2.5e-14 Score=95.16 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=42.0
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
.+..|+||++.|.+. +...+.+.|||+||..||..|++. +..||+||+++
T Consensus 4 ~~~~C~IC~~~~~~~---------~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS---------RVVAHVLPCGHLLHRTCYEEMLKE---GYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTT---------TSCEEECTTSCEEETTHHHHHHHH---TCCCTTSCCSS
T ss_pred CCCcCcccChhhcCC---------CcCeEecCCCCcccHHHHHHHHHc---CCcCCCCCCcC
Confidence 346899999999652 224666679999999999999999 89999999976
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-14 Score=102.99 Aligned_cols=50 Identities=34% Similarity=0.799 Sum_probs=42.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.+..|+||++.|..+ ..++.+.|||+||..||..|++. +..||+||+++.
T Consensus 22 ~~~~C~IC~~~~~~~----------~~~~~l~C~H~fh~~Ci~~w~~~---~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESR----------QLLRVLPCNHEFHAKCVDKWLKA---NRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBT----------CEEEEETTTEEEETTHHHHHHHH---CSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCC----------CeEEEECCCCHhHHHHHHHHHHc---CCcCcCcCCcCC
Confidence 457899999999762 13455569999999999999999 899999999875
No 9
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-14 Score=100.36 Aligned_cols=50 Identities=30% Similarity=0.748 Sum_probs=41.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.+..|+||++.|... ..++.+.|||+||..||..|++. +..||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~----------~~~~~~~C~H~f~~~Ci~~~~~~---~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPR----------DELGICPCKHAFHRKCLIKWLEV---RKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSS----------SCEEEETTTEEEEHHHHHHHHHH---CSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCC----------CcEEEcCCCCEecHHHHHHHHHc---CCcCCCcCcccc
Confidence 346899999999762 23445569999999999999999 889999999864
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.46 E-value=3.1e-14 Score=105.14 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=41.7
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.+..|+||++.|..+ ...+.+.|||+||..||..|+.. +.+||+||++|.
T Consensus 39 ~~~~C~IC~~~~~~~----------~~~~~l~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKG----------DVATELPCHHYFHKPCVSIWLQK---SGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTT----------CEEEEETTTEEEEHHHHHHHHTT---TCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCC----------CcEEecCCCChHHHHHHHHHHHc---CCcCcCcCccCC
Confidence 457899999999762 13444559999999999999998 889999999874
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=3.1e-14 Score=101.42 Aligned_cols=52 Identities=29% Similarity=0.720 Sum_probs=42.9
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
.+..|+||++.|... ..++.+.|||+||..||..|++. +..||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~~----------~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALG----------ESVRQLPCNHLFHDSCIVPWLEQ---HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTT----------SCEEECTTSCEEETTTTHHHHTT---TCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCC----------CCEEEeCCCCeecHHHHHHHHHc---CCcCcCcCCccCCc
Confidence 346899999999762 23455569999999999999998 89999999988654
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=3.9e-14 Score=98.80 Aligned_cols=56 Identities=25% Similarity=0.605 Sum_probs=44.3
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
++..|+||++.|.+.. ..+...+.+.|||+||..||..|++. +..||+||+++...
T Consensus 9 ~~~~C~IC~~~~~~~~------~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIV------QNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHH------TTTCCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccc------cccCCeEeCCCCChHhHHHHHHHHHc---CCCCCCCCCccChh
Confidence 4468999999997720 01124466779999999999999999 89999999987643
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=6.6e-14 Score=96.77 Aligned_cols=55 Identities=24% Similarity=0.603 Sum_probs=43.4
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
....|+||++.|.+... .....+.+.|||+||..||..|+.. +..||+||+++.-
T Consensus 14 ~~~~C~IC~~~~~~~~~------~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQ------NGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTT------TTCCEEECSSSCEEEHHHHHHHHHH---CSSCTTTCCCCCC
T ss_pred CCCCCcccCcccccccc------ccCCeEeCCCCChhcHHHHHHHHHc---CCCCCCCCCccCc
Confidence 34689999999987311 0123466679999999999999999 8999999998753
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.42 E-value=6.7e-14 Score=95.38 Aligned_cols=55 Identities=25% Similarity=0.602 Sum_probs=43.1
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
+..|+||++.|.+... .....+.+.|||+||..||..|+.. +..||+||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~------~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQ------NGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHH------TTCCEEEETTSCEEEHHHHHHHHHH---CSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccc------cCCCEEeCCCCCchhHHHHHHHHHc---CCCCCCCCccCCcc
Confidence 4679999999976210 0113456679999999999999999 89999999987643
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=8e-14 Score=96.65 Aligned_cols=48 Identities=25% Similarity=0.639 Sum_probs=41.9
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.+..|+||++.+.+ +.+.+.|||.||..||..|+.. +..||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~------------~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSN------------YSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCS------------CEEETTTTEEESTTHHHHHHHH---SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccC------------CcEecCCCCeeHHHHHHHHHhC---cCcCcCCChhhH
Confidence 34689999999966 5566779999999999999999 899999999864
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=96.64 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=42.8
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
...|+||++.|.+ +++++.|||.||..||..|+.. +..||+||+++...
T Consensus 15 ~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID------------ATTITECLHTFCKSCIVRHFYY---SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS------------CEECSSSCCEECHHHHHHHHHH---CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC------------cCEECCCCCHHHHHHHHHHHHc---CCcCCCcCcccCcc
Confidence 3689999999976 6666579999999999999998 89999999987653
No 17
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-13 Score=98.86 Aligned_cols=53 Identities=26% Similarity=0.775 Sum_probs=42.9
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccccC
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE 220 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~~ 220 (220)
....|+||++.|.. +..++ .|+|.||.+||.+||+. .++.+||+||++|.|+.
T Consensus 14 ~i~~C~IC~~~i~~--------g~~C~----~C~h~fH~~Ci~kWl~~-~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQ--------GQSCE----TCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSS--------SEECS----SSCCEECHHHHHHHSTT-CSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHccc--------CCccC----CCCchhhHHHHHHHHHh-cCCCCCCCCcCcCCCCC
Confidence 44789999999964 33333 69999999999999998 12389999999999863
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.9e-13 Score=97.90 Aligned_cols=54 Identities=28% Similarity=0.762 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCC-----CcchHHHHHHHHHhCCCCCCCCCcCccccccC
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCS-----HCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE 220 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg-----HvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~~ 220 (220)
.+..|.||+++|+++ .+++ +.|+ |.||..||..||..+ +..+||+||++|.+++
T Consensus 14 ~~~~C~IC~~~~~~~----------~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~~-~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDE----------SPLI-TPCHCTGSLHFVHQACLQQWIKSS-DTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSS----------SCEE-CSSSCCSSSCCEETTHHHHHHHHH-CCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCC----------CeeE-eccccCCcCCeeCHHHHHHHHhhC-CCCCCCCCCCeeecCc
Confidence 457899999999652 2444 4586 999999999999881 2369999999998753
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.7e-13 Score=95.24 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=40.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
.+..|+||++.|.+ ++.+ .|||+||..||..|+.. +..||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~------------~~~~-~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVH------------PVSL-PCKHVFCYLCVKGASWL---GKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSS------------EEEE-TTTEEEEHHHHHHCTTC---SSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCC------------CEEc-cCCCHHHHHHHHHHHHC---CCcCcCcCchhCH
Confidence 34689999999976 4444 59999999999999998 8999999998753
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.8e-13 Score=92.19 Aligned_cols=52 Identities=23% Similarity=0.624 Sum_probs=42.0
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
.+..|+||++.|.+ ++++ .|||.||..||..|+....+...||+||+++...
T Consensus 19 ~~~~C~IC~~~~~~------------~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQK------------PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSS------------EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCC------------eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34689999999976 4554 6999999999999997322377999999988754
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.30 E-value=9.7e-13 Score=98.64 Aligned_cols=48 Identities=29% Similarity=0.670 Sum_probs=41.4
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCC-CCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVH-HQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~-~sCPvCR~e~~~ 218 (220)
+..|+||++.|.+ |+..+.|||.||..||..|+.. . ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~------------p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRD------------ARLCPHCSKLCCFSCIRRWLTE---QRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSS------------EEECTTTCCEEEHHHHHHHHHH---TCSBCTTTCCBCCG
T ss_pred CCCCccCCccccC------------ccccCCCCChhhHHHHHHHHHH---CcCCCCCCCCcCCH
Confidence 3579999999976 5664679999999999999998 5 799999998754
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=92.60 Aligned_cols=49 Identities=27% Similarity=0.514 Sum_probs=40.1
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
+..|+||++.|.+ |+++..|||.||..||..|+... +...||+||+++.
T Consensus 15 ~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 15 ELLCLICKDIMTD------------AVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDV 63 (74)
T ss_dssp GGSCSSSCCCCTT------------CEECSSSCCEECTTHHHHHHHHS-SSSCCSSSCCSSC
T ss_pred CCCCcCCChHHhC------------CeEcCCCCCHHHHHHHHHHHHhc-CCCcCCCCCCcCC
Confidence 3679999999977 56654499999999999999971 2379999999754
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-12 Score=89.93 Aligned_cols=49 Identities=22% Similarity=0.558 Sum_probs=40.4
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
...|+||++.+.+ |+. +.|||+||..||..|+.. ++..||+||+++...
T Consensus 15 ~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 15 KYKCEKCHLVLCS------------PKQ-TECGHRFCESCMAALLSS--SSPKCTACQESIVKD 63 (66)
T ss_dssp CEECTTTCCEESS------------CCC-CSSSCCCCHHHHHHHHTT--SSCCCTTTCCCCCTT
T ss_pred CCCCCCCChHhcC------------eeE-CCCCCHHHHHHHHHHHHh--CcCCCCCCCcCCChh
Confidence 4689999999976 444 459999999999999953 278999999987654
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3e-12 Score=92.50 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=42.1
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
...|+||++.|.+. +...+.+.|||.||..||..|+....+...||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~---------~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEE---------QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTT---------SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCcccccc---------CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 46899999999762 2224455699999999999999982224899999998764
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.1e-12 Score=92.66 Aligned_cols=46 Identities=33% Similarity=0.729 Sum_probs=39.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
...|+||++.|.+ |++ +.|||+||..||..|+.. ...||+||+.+.
T Consensus 15 ~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN------------PVV-TKCRHYFCESCALEHFRA---TPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS------------EEE-CTTSCEEEHHHHHHHHHH---CSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC------------eeE-ccCCCHhHHHHHHHHHHC---CCcCCCcCcccc
Confidence 3579999999976 454 569999999999999998 899999999864
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.26 E-value=1.4e-12 Score=103.02 Aligned_cols=45 Identities=33% Similarity=0.851 Sum_probs=39.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||++.|.+ |+.+ .|||.||..||..|+.. +.+||+||+++.
T Consensus 54 ~~C~iC~~~~~~------------~~~~-~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE------------AVTL-NCAHSFCSYCINEWMKR---KIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS------------EEEE-TTSCEEEHHHHHHHTTT---CSBCTTTCCBCC
T ss_pred CCCcccCcccCC------------ceEC-CCCCCccHHHHHHHHHc---CCcCCCCCCcCC
Confidence 469999999976 4544 59999999999999998 899999999874
No 27
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.25 E-value=2.3e-12 Score=95.90 Aligned_cols=46 Identities=37% Similarity=0.714 Sum_probs=40.9
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||++.|.+ |++++.|||.||..||..|+.. +..||+||+.+.
T Consensus 23 ~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNI------------AMIIPQCSHNYCSLCIRKFLSY---KTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSS------------EEECTTTCCEEEHHHHHHHHTT---CCBCTTTCCBCC
T ss_pred CCcccCChhhCC------------cCEECCCCCHhhHHHHHHHHHC---CCCCCCCCCcCC
Confidence 579999999976 5666579999999999999998 899999999875
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=2.5e-12 Score=98.94 Aligned_cols=55 Identities=24% Similarity=0.603 Sum_probs=43.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
++..|+||++.|.+... ++...+.+.|||+||..||..|++. +.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~------~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQ------NGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHH------TTCCEEEETTCCEEEHHHHHHHHTT---CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccc------cccCeEecCCCChhhHHHHHHHHHh---CCCCCCCCCcCcc
Confidence 44689999999977100 0113466679999999999999999 8899999998764
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=5.5e-12 Score=86.86 Aligned_cols=53 Identities=19% Similarity=0.460 Sum_probs=40.7
Q ss_pred Ccccccccc-cccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 156 DDTCGICRI-AFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 156 ~~~CaICLe-~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
+..|+||++ .|.+. ....+.+.|||+||..||..|+.. +...||+||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~---------~~~~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNP---------SLKLMVNVCGHTLCESCVDLLFVR--GAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCS---------SCCEEECTTCCCEEHHHHHHHHHT--TSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCC---------ccCeecCCCCCHhHHHHHHHHHHc--CCCcCCCCCCccccc
Confidence 357999999 77651 112355679999999999999876 267899999987643
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.22 E-value=4e-12 Score=96.07 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=41.6
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
+..|+||++.|.+ |+.++.|||.||..||..|+.. +..||+||..+.
T Consensus 15 ~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 15 HLMCVLCGGYFID------------ATTIIECLHSFCKTCIVRYLET---SKYCPICDVQVH 61 (108)
T ss_dssp GTBCTTTSSBCSS------------EEEETTTCCEEEHHHHHHHHTS---CSBCTTTCCBSC
T ss_pred cCCCccCChHHhC------------cCEeCCCCChhhHHHHHHHHHh---CCcCcCCCcccc
Confidence 4689999999977 6666579999999999999998 899999999865
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.22 E-value=5.9e-12 Score=89.49 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=41.2
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
.+..|+||++.|.+ |+++ .|||.||..||..|+.. ++..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~------------Pv~~-~CgH~fc~~Ci~~~~~~--~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKD------------PVIV-STGQTYERSSIQKWLDA--GHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSS------------EEEE-TTTEEEEHHHHHHHHTT--TCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccC------------CEEc-CCCCeecHHHHHHHHHH--CcCCCCCCcCCCCh
Confidence 34689999999977 5555 59999999999999976 37899999998754
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=84.11 Aligned_cols=45 Identities=27% Similarity=0.717 Sum_probs=37.0
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
++..|+||++.|.+ |+++ .|||+||..||..|+.....+..||+|
T Consensus 19 ~~~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK------------PVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS------------CEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC------------eEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34689999999976 5555 599999999999999852237799998
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=90.34 Aligned_cols=49 Identities=27% Similarity=0.541 Sum_probs=40.4
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
.+..|+||++.|.+ |+.+..|||.||..||..|+.. .+...||+||+++
T Consensus 12 ~~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD------------AVVIPCCGNSYCDECIRTALLE-SDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS------------CEECTTTCCEECHHHHHHHHHH-CTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcC------------ceECCCCCCHHHHHHHHHHHHh-cCCCcCcCCCCcC
Confidence 34689999999977 6655449999999999999986 2357999999986
No 34
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.6e-12 Score=90.59 Aligned_cols=47 Identities=32% Similarity=0.793 Sum_probs=39.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
.+..|+||++.+.+ +.+.|||.||..||..|+.. +..||+||+++.-
T Consensus 14 ~~~~C~IC~~~~~~--------------~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD--------------LILPCAHSFCQKCIDKWSDR---HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS--------------EEETTTEEECHHHHHHSSCC---CSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCccC--------------cccCCCCcccHHHHHHHHHC---cCcCCCcCCcccC
Confidence 34689999999843 44559999999999999998 9999999997753
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=2.2e-11 Score=86.96 Aligned_cols=50 Identities=32% Similarity=0.738 Sum_probs=41.1
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPvCR~e~~~ 218 (220)
+..|+||++.|.+ +++ +.|||.||..||..|+... .+...||+||+.+..
T Consensus 19 ~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKE------------PVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSS------------CEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCc------------cee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4689999999976 554 4599999999999999872 136799999998764
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=9.2e-12 Score=95.71 Aligned_cols=56 Identities=23% Similarity=0.599 Sum_probs=43.9
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
.....|+||++.|.+.... ....+.+.|||+||..||.+|+.. +.+||+||+.+.-
T Consensus 70 ~~~~~C~iC~~~~~~~~~~------~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQN------GRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHT------TCCEEEETTSBEEEHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCcccccccc------CcceEeCCCCChhhHHHHHHHHHc---CCCCCCCCCcCCh
Confidence 3457899999999762111 113466679999999999999999 8999999998764
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.16 E-value=1.4e-11 Score=99.68 Aligned_cols=47 Identities=30% Similarity=0.656 Sum_probs=40.8
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||++.|.+ |+.++.|||.||..||..|+.. ++..||+||..+.
T Consensus 55 ~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN------------TMTTKECLHRFCADCIITALRS--GNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS------------EEEETTTCCEEEHHHHHHHHHT--TCCBCTTTCCBCC
T ss_pred CCCcccChHhhC------------cCEeCCCCChhHHHHHHHHHHh--CcCCCCCCCCcCC
Confidence 589999999976 6666679999999999999986 3788999999873
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=2.2e-11 Score=91.80 Aligned_cols=49 Identities=31% Similarity=0.723 Sum_probs=39.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
..|+||++.|.+ |+.+ .|||.||..||..|+....+...||+||..+..
T Consensus 22 ~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKE------------PVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSS------------CCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcC------------eEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 579999999976 4554 599999999999999973234589999998753
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.8e-11 Score=86.41 Aligned_cols=50 Identities=28% Similarity=0.664 Sum_probs=40.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh---CCCCCCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS---QQVHHQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~---~~~~~sCPvCR~e~~~ 218 (220)
...|+||++.|.+ ++.+ .|||.||..||..|+.. ..+...||+||..+..
T Consensus 19 ~~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQ------------PLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSS------------CBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCC------------ceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4689999999976 4444 59999999999999976 2347899999998764
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.13 E-value=1.9e-11 Score=94.42 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=39.0
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||++.|.+ |+.+ .|||.||..||..|+.. +...||+||+.+.
T Consensus 53 ~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCICCQELVFR------------PITT-VCQHNVCKDCLDRSFRA--QVFSCPACRYDLG 98 (124)
T ss_dssp TBCTTTSSBCSS------------EEEC-TTSCEEEHHHHHHHHHT--TCCBCTTTCCBCC
T ss_pred CCCCcCChHHcC------------cEEe-eCCCcccHHHHHHHHhH--CcCCCCCCCccCC
Confidence 579999999976 5554 59999999999999986 2559999999875
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.12 E-value=8.8e-12 Score=88.40 Aligned_cols=51 Identities=27% Similarity=0.619 Sum_probs=40.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC----CCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ----QVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~----~~~~sCPvCR~e~~~ 218 (220)
++..|+||++.|.+ |+.+ .|||.||..||..|+... .+...||+||.++..
T Consensus 11 ~~~~C~IC~~~~~~------------p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE------------PLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS------------CCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC------------eeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34689999999976 4444 599999999999999762 236799999998754
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.2e-11 Score=80.63 Aligned_cols=45 Identities=27% Similarity=0.851 Sum_probs=35.7
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
+...|+||++.|.+ +++ +.|||+||..||..|+.....+..||+|
T Consensus 14 ~~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE------------PVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS------------CCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc------------cEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34689999999976 444 4599999999999996532238899998
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.04 E-value=7.5e-11 Score=94.83 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=39.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
...|+||++.|.+ |++ +.|||.||..||..|+.. +...||+||..+..
T Consensus 78 ~~~C~IC~~~~~~------------pv~-~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQ------------PVT-TECFHNVCKDCLQRSFKA--QVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSS------------EEE-CTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCT
T ss_pred CCEeecCChhhcC------------CEE-cCCCCchhHHHHHHHHHh--CCCcCCCCCccCCC
Confidence 3579999999977 555 459999999999999987 24589999998753
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.03 E-value=7.1e-11 Score=90.69 Aligned_cols=48 Identities=27% Similarity=0.557 Sum_probs=39.7
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
+..|+||++.|.+ |+.+ .|||.||..||..|+... ...||+||.++..
T Consensus 18 ~~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMALRE------------AVQT-PCGHRFCKACIIKSIRDA--GHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBCSS------------EEEC-TTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CCCCCcCChhhcC------------eEEC-CcCChhhHHHHHHHHhhC--CCCCCCCCCCcCH
Confidence 4589999999976 5444 599999999999999881 3499999998754
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.01 E-value=1.3e-10 Score=88.69 Aligned_cols=48 Identities=29% Similarity=0.629 Sum_probs=40.2
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
+..|+||++.|.+ |+. +.|||.||..||..|+... ...||+||.++..
T Consensus 23 ~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD------------PVE-TSCKHLFCRICILRCLKVM--GSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS------------EEE-CTTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC------------cEE-cCCCCcccHHHHHHHHhHC--cCcCCCCCCCCCH
Confidence 3579999999976 555 4699999999999999872 6789999998753
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.00 E-value=2e-10 Score=83.89 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=42.0
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
..-.|+||++.|++ |+++. |||.|+..||..|+.. +.+||+||+++..
T Consensus 13 ~~~~CpI~~~~m~d------------PV~~~-cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD------------PVRLP-SGTVMDRSIILRHLLN---SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS------------EEECT-TSCEEEHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred hheECcccCchhcC------------CeECC-CCCEECHHHHHHHHhc---CCCCCCCcCCCCh
Confidence 34689999999988 66666 9999999999999998 8999999998753
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.99 E-value=5.3e-11 Score=90.71 Aligned_cols=46 Identities=26% Similarity=0.661 Sum_probs=39.3
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||++.|.+ |+.+ .|||.||..||..|+.. +...||+||+.+.
T Consensus 16 ~~C~iC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVE------------PVTL-PCNHTLCKPCFQSTVEK--ASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSS------------CEEC-TTSCEECHHHHCCCCCT--TTSBCTTTCCBCH
T ss_pred CCCccCCcccCc------------eeEc-CCCCHHhHHHHHHHHhH--CcCCCCCCCcccC
Confidence 579999999976 5555 59999999999999976 3678999999875
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.94 E-value=3.4e-10 Score=85.33 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=42.2
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
..-.|+||++.|.+ |+++. |||.|+..||..|+.. +.+||+||.++..
T Consensus 28 ~~~~CpI~~~~m~d------------PV~~~-cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD------------PVRLP-SGTIMDRSIILRHLLN---SPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS------------EEEET-TTEEEEHHHHHHHTTS---CSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC------------CeECC-CCCEEchHHHHHHHHc---CCCCCCCCCCCCh
Confidence 44689999999988 67776 9999999999999997 8899999998753
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=3.6e-10 Score=84.84 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCC-CcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCS-HCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg-HvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
..-.|+||++.|++ |+++. || |.|+..||..|+.. +.+||+||+++..
T Consensus 21 ~~~~CpI~~~~m~d------------PV~~~-cG~htf~r~cI~~~l~~---~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD------------PVVLP-SSRVTVDRSTIARHLLS---DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS------------EEECT-TTCCEEEHHHHHHHTTT---SCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC------------CeECC-CCCeEECHHHHHHHHHh---CCCCCCCCCCCCh
Confidence 34689999999988 66655 99 99999999999998 8899999998754
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.94 E-value=3e-10 Score=78.69 Aligned_cols=48 Identities=25% Similarity=0.517 Sum_probs=39.7
Q ss_pred CCcccccccccccccCCCCCCCCCCCCcee-cCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
++..|.||++.+.+ ++++ +.|||+ |+..|+..|... +..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~------------~~~~~~pCgH~~~C~~C~~~~~~~---~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN------------GCIVHGKTGHLMACFTCAKKLKKR---NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC------------EEEEETTEEEEEECHHHHHHHHHT---TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC------------EEEECCCCCChhhHHHHHHHHHHc---CCcCCCcCcchh
Confidence 34689999999866 3333 369999 899999999998 889999999875
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.94 E-value=1.4e-10 Score=92.36 Aligned_cols=49 Identities=27% Similarity=0.626 Sum_probs=40.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
..-.|+||++.|.+ |+. +.|||.||..||..|+.. +...||+||.++.|
T Consensus 30 ~~~~C~IC~~~~~~------------pv~-~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRR------------PFQ-AQCGHRYCSFCLASILSS--GPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSS------------EEE-CTTSCEEEHHHHHHHGGG--SCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcC------------cEE-CCCCCccCHHHHHHHHhc--CCCCCCCCCCcccc
Confidence 34689999999977 544 469999999999999987 24599999997643
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.93 E-value=4.4e-10 Score=81.14 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=38.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
++..|+||++.|... +.....+.|||.||..||..|+.. +...||+||+.+.
T Consensus 10 ~~~~CpICle~~~~~---------d~~~~p~~CGH~fC~~Cl~~~~~~--~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 10 DPVECPLCMEPLEID---------DINFFPCTCGYQICRFCWHRIRTD--ENGLCPACRKPYP 61 (78)
T ss_dssp CCCBCTTTCCBCCTT---------TTTCCSSTTSCCCCHHHHHHHTTS--SCSBCTTTCCBCS
T ss_pred cCCcCCccCccCccc---------cccccccCCCCCcCHHHHHHHHhc--CCCCCCCCCCccC
Confidence 446899999988541 111222359999999999999854 3789999999875
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.92 E-value=5.1e-10 Score=102.82 Aligned_cols=46 Identities=30% Similarity=0.715 Sum_probs=38.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||++.+.+ ++. +.|||+||..||..|+.. .+..||+||+++.
T Consensus 333 ~~C~ICle~~~~------------pv~-lpCGH~FC~~Ci~~wl~~--~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 333 QLCKICAENDKD------------VKI-EPCGHLMCTSCLTSWQES--EGQGCPFCRCEIK 378 (389)
T ss_dssp SBCTTTSSSBCC------------EEE-ETTCCEECHHHHHHHHHH--TCSBCTTTCCBCC
T ss_pred CCCCccCcCCCC------------eEE-eCCCChhhHHHHHHHHhc--CCCCCCCCCCccC
Confidence 589999999966 444 459999999999999993 1889999999865
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=1.7e-10 Score=88.39 Aligned_cols=46 Identities=24% Similarity=0.616 Sum_probs=38.8
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
...|+||++.|.+ |+++..|||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~------------pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILRE------------PVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSS------------CBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhC------------ccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCcc
Confidence 3579999999977 666646999999999999987 379999998754
No 55
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.88 E-value=1e-09 Score=75.49 Aligned_cols=52 Identities=19% Similarity=0.542 Sum_probs=38.9
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceec-CCCC---cchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWG-QCSH---CFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~-~CgH---vFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
+...|.||+++..+ +++.+ .|.| .||..||.+|+.. .++.+||+||++|.++
T Consensus 5 ~~~~CrIC~~~~~~------------~l~~PC~C~gs~~~~H~~Cl~~W~~~-~~~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 5 DVPVCWICNEELGN------------ERFRACGCTGELENVHRSCLSTWLTI-SRNTACQICGVVYNTR 60 (60)
T ss_dssp SCCEETTTTEECSC------------CCCCSCCCSSGGGSCCHHHHHHHHHH-HTCSBCTTTCCBCCCC
T ss_pred CCCEeEEeecCCCC------------ceecCcCCCCchhhhHHHHHHHHHHh-CCCCccCCCCCeeecC
Confidence 44689999987422 23322 3555 9999999999986 2478999999999875
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=80.97 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=39.7
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCC--cCcc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPM--CRQE 215 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPv--CR~e 215 (220)
.-.|+||++.|.+ |+++..|||+|+..||..|+..+ .+...||+ |++.
T Consensus 7 ~~~CPI~~~~~~d------------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKK------------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSS------------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcC------------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4579999999988 67775699999999999999872 12469999 9865
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.84 E-value=9.9e-10 Score=75.82 Aligned_cols=47 Identities=21% Similarity=0.570 Sum_probs=38.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCce-ecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLV-WGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~-~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
+..|.||++...+ +.+ .+.|||+ |+..|+..|.+. ...||+||+++.
T Consensus 7 ~~~C~IC~~~~~~------------~~~~~~pCgH~~~C~~C~~~~~~~---~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD------------GNIIHGRTGHLVTCFHCARRLKKA---GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC------------EEEEETTEEEEEECHHHHHHHHHT---TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC------------eEEEecCCCCHhHHHHHHHHHHHh---CCcCCCcCchhh
Confidence 4689999998866 232 2369998 999999999988 789999999875
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=5.2e-10 Score=75.28 Aligned_cols=44 Identities=25% Similarity=0.651 Sum_probs=36.1
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
...|+||++.|.+ |+++ .|||.||..||..| ...||+||+++..
T Consensus 6 ~~~C~IC~~~~~~------------p~~l-~CgH~fC~~Ci~~~------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKC------------PKLL-PCLHTLCSGCLEAS------GMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBC------------CSCS-TTSCCSBTTTCSSS------SSSCSSCCSSSSC
T ss_pred CCCceEeCCccCC------------eEEc-CCCCcccHHHHccC------CCCCCcCCcEeec
Confidence 4579999999976 5444 49999999999873 6689999998764
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=2.1e-09 Score=91.96 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=40.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..-.|+||++.|.+ |+++. |||.||..||..|+... ..+||+||.++.
T Consensus 207 ~~~~c~i~~~~~~d------------Pv~~~-~gh~f~~~~i~~~~~~~--~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMRE------------PCITP-SGITYDRKDIEEHLQRV--GHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSS------------EEECS-SCCEEETTHHHHHHHHT--CSSCTTTCCCCC
T ss_pred cccCCcCcCCHhcC------------CeECC-CCCEECHHHHHHHHHHC--CCCCcCCCCCCc
Confidence 44689999999988 66666 99999999999999872 445999999875
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.73 E-value=3.3e-09 Score=85.86 Aligned_cols=49 Identities=27% Similarity=0.569 Sum_probs=40.4
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
+.-.|+||++.|.+ |+. +.|||+||..||..|+... ...||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~------------pv~-~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALRE------------AVQ-TPCGHRFCKACIIKSIRDA--GHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSS------------EEE-CTTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcC------------cEE-CCCCCHHHHHHHHHHHHhC--CCCCCCCccCcch
Confidence 34689999999977 555 4699999999999999872 4599999998754
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.72 E-value=2.5e-09 Score=96.93 Aligned_cols=58 Identities=22% Similarity=0.555 Sum_probs=40.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-C-------CCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-Q-------VHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-~-------~~~sCPvCR~e~~ 217 (220)
....|+||++.+.+. ..+|...| ..++|||.||..||.+||+.. . -..+||+||+++.
T Consensus 307 ~~~ECaICys~~l~~---g~lPdk~C--~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDG---GEVPLVSC--DNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTT---CCCCCBCC--SCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCC---CCCccccc--cCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 346899999999761 22332111 123699999999999999861 0 0257999999764
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.70 E-value=2.5e-09 Score=75.84 Aligned_cols=41 Identities=24% Similarity=0.477 Sum_probs=34.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||++.+.+ ++. +.|||. ||..|+..| ..||+||+.+.
T Consensus 25 ~~C~iC~~~~~~------------~~~-~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIA------------IVF-VPCGHLVTCKQCAEAV-------DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCC------------EEE-ETTCCBCCCHHHHTTC-------SBCTTTCCBCS
T ss_pred CCCCCCCCCCCC------------EEE-cCCCChhHHHHhhhcC-------ccCCCcCcCcc
Confidence 579999999866 444 459999 999999988 36999999875
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.62 E-value=9.6e-09 Score=89.89 Aligned_cols=51 Identities=29% Similarity=0.605 Sum_probs=42.6
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC--cCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM--CRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv--CR~e~~~ 218 (220)
.+-.|+||++.|.+ |+....|||+|+..||..|+.. .+...||+ ||+.+..
T Consensus 180 ~el~CPIcl~~f~D------------PVts~~CGHsFcR~cI~~~~~~-~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEA------------PLISRKCNHVFDRDGIQNYLQG-YTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSS------------EEEESSSCCEEEHHHHHHHSTT-CSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccC------------CeeeCCCCCcccHHHHHHHHHh-CCCCCCCcccccCcCch
Confidence 34689999999988 7776679999999999999986 23568999 9997654
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.61 E-value=1.8e-08 Score=83.54 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=40.7
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
..-.|+||++.|.+ |+++ .|||.|+..||..|+..+ ..+||+||.++..
T Consensus 105 ~~f~CPI~~elm~D------------PV~~-~~Ghtfer~~I~~~l~~~--~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMRE------------PCIT-PSGITYDRKDIEEHLQRV--GHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSS------------EEEC-TTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCG
T ss_pred HhhcccCccccCCC------------CeEC-CCCCEECHHHHHHHHHhC--CCCCCCCcCCCCh
Confidence 34689999999988 6666 499999999999999872 3479999998754
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.59 E-value=1.8e-08 Score=69.42 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=41.0
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~ 218 (220)
-.|+||++.|++ |++...|||+|...||.+||+. +.+||++++++..
T Consensus 4 ~~CpIs~~~m~d------------PV~~~~sG~~yer~~I~~~l~~---~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR------------PVLSPKSRTIFEKSLLEQYVKD---TGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS------------EEEETTTTEEEEHHHHHHHHHH---HSBCTTTCCBCCG
T ss_pred EEecCCCCCCCC------------CEEeCCCCcEEcHHHHHHHHHh---CCCCcCCcCCCCh
Confidence 469999999987 6666469999999999999998 6789999998754
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.2e-08 Score=70.91 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=33.1
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|+||++.+.+ ++. +.|||. ||..|+. . ...||+||+++.
T Consensus 26 ~~C~IC~~~~~~------------~~~-~pCgH~~~C~~C~~----~---~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 26 KLCKICMDRNIA------------IVF-VPCGHLVTCKQCAE----A---VDKCPMCYTVIT 67 (75)
T ss_dssp HSCSSSCSSCCC------------BCC-SSSCCCCBCHHHHH----H---CSBCTTTCCBCC
T ss_pred CCCCcCCCCCCC------------EEE-ecCCCHHHHHHHhh----C---CCCCccCCceec
Confidence 579999999866 333 459999 9999995 3 568999999765
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=5e-08 Score=68.32 Aligned_cols=43 Identities=33% Similarity=0.661 Sum_probs=34.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
++..|.||++.+.+ .+.+.|||+ ||..|+. . ...||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~-------------~v~~pCgH~~~C~~C~~----~---~~~CP~CR~~i~ 57 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN-------------WVLLPCRHTCLCDGCVK----Y---FQQCPMCRQFVQ 57 (68)
T ss_dssp CSSCCSSSSSSCCC-------------CEETTTTBCCSCTTHHH----H---CSSCTTTCCCCC
T ss_pred CCCCCCCcCcCCCC-------------EEEECCCChhhhHHHHh----c---CCCCCCCCcchh
Confidence 34689999998765 444559999 9999998 3 568999999875
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.38 E-value=9.6e-08 Score=70.20 Aligned_cols=50 Identities=18% Similarity=0.470 Sum_probs=37.1
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--C---CCCCCCC--cCcc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--Q---VHHQCPM--CRQE 215 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~---~~~sCPv--CR~e 215 (220)
...|+||++.+... ..+.+..|||.||..||..++... + ....||. |+..
T Consensus 5 ~~~C~IC~~~~~~~----------~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVE----------QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGG----------GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccc----------cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35799999999762 112223599999999999999752 1 1358999 9987
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.35 E-value=8.2e-08 Score=69.06 Aligned_cols=41 Identities=22% Similarity=0.567 Sum_probs=33.3
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|.||++.+.+ + +.+.|||+ ||..|+..| ..||+||+.+.
T Consensus 19 ~~C~IC~~~~~~------------~-v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEIN------------S-TFCPCGHTVCCESCAAQL-------QSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCC------------E-EEETTCBCCBCHHHHTTC-------SBCTTTCCBCC
T ss_pred CEeEEeCcccCc------------E-EEECCCCHHHHHHHHHhc-------CcCCCCCchhh
Confidence 579999998866 3 44459999 999999865 37999999764
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.18 E-value=2.2e-07 Score=84.02 Aligned_cols=43 Identities=26% Similarity=0.594 Sum_probs=35.4
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
++..|+||++.+.+ ++.+ .|||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~------------~v~l-pCgH~~fC~~C~~~~-------~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVS------------VVFI-PCGHLVVCQECAPSL-------RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCC------------EEEE-TTCCEEECTTTGGGC-------SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCc------------eEEc-CCCChhHhHHHHhcC-------CcCCCCCCCcc
Confidence 34689999999976 4444 59999 999999987 36999999875
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.16 E-value=9.1e-07 Score=76.19 Aligned_cols=52 Identities=27% Similarity=0.807 Sum_probs=41.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
....|+||.+-+.. |..|+ .|+|.||.+|+..|++. .++..||.|+.+|.++
T Consensus 179 ~i~~C~iC~~iv~~--------g~~C~----~C~~~~H~~C~~~~~~~-~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQ--------GQSCE----TCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSS--------CEECS----SSCCEECHHHHHHHTTT-CSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhC--------CcccC----ccChHHHHHHHHHHHHh-CCCCCCCCCCCCCCCC
Confidence 35789999999864 32232 39999999999999987 2356999999999875
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.06 E-value=2e-06 Score=64.91 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=39.1
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccccC
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE 220 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~~ 220 (220)
-|.+|--+|.. -..+..|+|+||.+|+..|... +..+||.|+.++...|
T Consensus 3 fC~~C~~Pi~i------------ygRmIPCkHvFCydCa~~~~~~--~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV------------YGRMIPCKHVFCYDCAILHEKK--GDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE------------EEEEETTCCEEEHHHHHHHHHT--TCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE------------EeeeccccccHHHHHHHHHHhc--cCCCCcCcCCeeeeeE
Confidence 48888877765 3445569999999999999866 2789999999987654
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.12 E-value=0.019 Score=41.79 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=24.5
Q ss_pred cccccccccccccCCCCCCCCCCCCcee-cCCCCcchHHHHHH-HH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHCFHIHCIMK-WL 200 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHvFH~~CI~~-WL 200 (220)
..|.||++.+... ++.. +.|+|.|+..|+.. |.
T Consensus 4 ~~C~~C~~~~~~~-----------av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQD-----------AVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCB-----------CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCC-----------ceEECCcCChHHhHHHCHHHhc
Confidence 5799999875331 3332 67999999999998 54
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.96 E-value=0.12 Score=35.49 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=32.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCcc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQE 215 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~e 215 (220)
+..|.||.+.= + .+.--.|...||..|+.+.|.. ..+.=.||.|...
T Consensus 12 ~~~C~vC~~~~------------~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGT------------D-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCT------------T-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCC------------e-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 36799996421 1 2333459999999999988865 1335589999764
No 75
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=85.20 E-value=0.51 Score=33.60 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=30.2
Q ss_pred cceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH
Q psy14827 147 VATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198 (220)
Q Consensus 147 ~~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~ 198 (220)
...|..+.+...|.+|...|..-.. .-.--.||++||..|...
T Consensus 12 ~~~W~pd~~~~~C~~C~~~Fs~~~R---------rHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 12 KGYWQEDEDAPACNGCGCVFTTTVR---------RHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CSCCCCTTTCCBCTTTCCBCCTTSC---------CEECTTTCCEECTGGGCC
T ss_pred CCccccCCCCCCCcCcCCccccchh---------cccccCCCcEEChHHhCC
Confidence 4567777888899999999965100 111124999999999654
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=83.37 E-value=0.37 Score=35.77 Aligned_cols=44 Identities=25% Similarity=0.634 Sum_probs=35.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|-.|--..+. ++.. ..|.+|..|+.--|+. ...||+|.+++-
T Consensus 29 ~nCKsCWf~~k~-------------LV~C-~dHYLCl~CLtlmL~~---SdrCpIC~~pLP 72 (99)
T 2ko5_A 29 QFCKSCWFENKG-------------LVEC-NNHYLCLNCLTLLLSV---SNRCPICKMPLP 72 (99)
T ss_dssp CCCCSSCSCCSS-------------EEEC-SSCEEEHHHHHHTCSS---SSEETTTTEECC
T ss_pred ccChhhccccCC-------------eeee-cchhhHHHHHHHHHhh---ccCCcccCCcCC
Confidence 479899877643 4443 7899999999999999 999999998653
No 77
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.84 E-value=1.9 Score=31.42 Aligned_cols=48 Identities=33% Similarity=0.736 Sum_probs=29.6
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCC-CcchHHHHHHHHHh-CCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCS-HCFHIHCIMKWLNS-QQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg-HvFH~~CI~~WL~~-~~~~~sCPvCR~e~ 216 (220)
.-| ||........+.|... .|. .-||..||. |.. ..++-.||.|+..-
T Consensus 37 ~yC-iC~~~~~g~MI~CD~~---------dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSYGEMIGCDNP---------DCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCCSCCCCCSCS---------SCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCCCCEeEecCC---------CCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 457 9988653322222222 165 679999997 433 13577899998753
No 78
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=79.39 E-value=0.63 Score=32.94 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=26.7
Q ss_pred ceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH
Q psy14827 148 ATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198 (220)
Q Consensus 148 ~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~ 198 (220)
..|..+.+...|.+|...|..-.. .-.--.||++||..|...
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~~~R---------rHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSISRR---------KHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBTTBC---------CEECTTTCCEECSGGGCE
T ss_pred CccccCccCCcccCcCCcccCccc---------cccCCCCCCEEChHHhCC
Confidence 457777778899999999964100 111124999999999653
No 79
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=78.92 E-value=0.63 Score=35.69 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=27.8
Q ss_pred eecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH
Q psy14827 149 TWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198 (220)
Q Consensus 149 ~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~ 198 (220)
.|..+.....|.+|...|..- .. .-.--.||++||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~------~R---rHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVT------VR---RHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSS------SC---CEECTTTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCccccc------cc---cccCCCCCeEEChHHhCC
Confidence 466666778999999999641 00 111224999999999643
No 80
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.49 E-value=0.77 Score=32.59 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=29.0
Q ss_pred cceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHH
Q psy14827 147 VATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIM 197 (220)
Q Consensus 147 ~~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~ 197 (220)
...|..+.+...|.+|...|..- .. .-.--.||.+||..|..
T Consensus 5 ~~~W~pd~~~~~C~~C~~~F~~~------~R---rHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 5 SSGRYPTNNFGNCTGCSATFSVL------KK---RRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSCSCCCCSSCSSSCCCCCSS------SC---CEECSSSCCEECTTTSC
T ss_pred CCccccCCCCCcCcCcCCccccc------hh---hhhhcCCCcEEChhhcC
Confidence 34577777888999999999541 10 01112499999999954
No 81
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=76.66 E-value=0.18 Score=34.04 Aligned_cols=53 Identities=17% Similarity=0.501 Sum_probs=34.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh----CCCCCCCCCcCcc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS----QQVHHQCPMCRQE 215 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~----~~~~~sCPvCR~e 215 (220)
.+..|.||....... ++..+.--.|.-.||..|+.+=|.. ..+.=.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~--------~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEA--------PNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBT--------TBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCC--------CCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 457899999775321 1112333469999999999875421 2346678888653
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.49 E-value=1.1 Score=28.57 Aligned_cols=47 Identities=30% Similarity=0.722 Sum_probs=29.0
Q ss_pred ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCc
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQ 214 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~ 214 (220)
.|.||...-.. +..+.--.|...||..|+.+=|.. ..+.=.||.|+.
T Consensus 2 ~C~vC~~~~~~----------~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED----------DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC----------SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC----------CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888754321 112333359999999999764433 123556999975
No 83
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=75.34 E-value=2.5 Score=33.29 Aligned_cols=50 Identities=22% Similarity=0.519 Sum_probs=34.1
Q ss_pred cCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH--------hCCCCCCCCCcCcc
Q psy14827 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN--------SQQVHHQCPMCRQE 215 (220)
Q Consensus 153 ~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~--------~~~~~~sCPvCR~e 215 (220)
+..++.|.||.+.=+ .+.--.|-.+||..||.+=|. ...+.-.||+|+..
T Consensus 60 Dg~~d~C~vC~~GG~-------------LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN-------------LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCSS-------------EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCCc-------------EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345678999865432 122235999999999997663 12457789999853
No 84
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.34 E-value=0.14 Score=34.24 Aligned_cols=50 Identities=26% Similarity=0.658 Sum_probs=32.5
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCccc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQEW 216 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~e~ 216 (220)
..+..|.||...= . .+.--.|.-.||..|+.+=|.. ..+.-.||.|....
T Consensus 3 ~~~~~C~vC~~~g-~------------ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKSG-Q------------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCCS-S------------CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCCC-c------------EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 3457899997631 1 2333359999999999865543 12355688887644
No 85
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.28 E-value=0.94 Score=32.66 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=28.2
Q ss_pred eecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHH
Q psy14827 149 TWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKW 199 (220)
Q Consensus 149 ~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~W 199 (220)
.|..+.+...|.+|...|..-.. .-.--.||++||..|...+
T Consensus 13 ~W~~d~~~~~C~~C~~~F~~~~R---------rhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 13 TWVPDSEAPNCMNCQVKFTFTKR---------RHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSC---------CEECTTTCCEECGGGSCEE
T ss_pred cCcccccCCcCcCCCCcccchhh---------CccccCCCCEECCcccCCe
Confidence 46556666789999999964100 1122349999999996543
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=74.99 E-value=1.1 Score=29.90 Aligned_cols=48 Identities=21% Similarity=0.641 Sum_probs=32.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCcc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQE 215 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~e 215 (220)
.+..|.||...- + .+.--.|...||..|+.+-+.. ..+.=.||.|+.+
T Consensus 10 ~~~~C~vC~~~g-~------------ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQGG-E------------IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCCS-S------------EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCCC-c------------EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 457899997631 1 2222359999999999976543 2357789999875
No 87
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.27 E-value=2.7 Score=38.17 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=36.5
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCc--chHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC--FHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv--FH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
-.|+|=+..|.. |.....|.|+ |-..=+...... ...-.||+|.+...|.
T Consensus 250 L~CPlS~~ri~~------------PvRg~~C~HlQCFDl~sfL~~~~~-~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKY------------PSKSINCKHLQCFDALWFLHSQLQ-IPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSS------------EEEETTCCSSCCEEHHHHHHHHHH-SCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccc------------cCcCCcCCCcceECHHHHHHHhhc-CCceeCCCCCcccCHH
Confidence 579988888866 7777789998 665444444333 4578999999987664
No 88
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.57 E-value=2.4 Score=30.74 Aligned_cols=34 Identities=24% Similarity=0.655 Sum_probs=21.7
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHH
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKW 199 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~W 199 (220)
.|+.|.||-- |... +.-... .|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~-~t~~---------~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV-WTAE---------SLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC-CCSS---------CCSSCS-SSSSCCCHHHHHHH
T ss_pred CCcccCcccc-cccc---------ceeccc-cccccccHhhcccc
Confidence 5688999952 2221 101111 29999999999985
No 89
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=72.96 E-value=0.37 Score=32.32 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=31.8
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCcc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQE 215 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~e 215 (220)
.+..|.||...= ..+.--.|...||..|+.+-|.. ..+.=.||.|+..
T Consensus 8 ~~~~C~vC~~~g-------------~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGG-------------ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCS-------------SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCC-------------CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 457799997521 12222349999999999865543 1245579999864
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.61 E-value=6.9 Score=28.60 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=37.0
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
..|.||=+++-.. .+.+.=+.-..|+--.|..|..-=.+. ++..||-|+..|+
T Consensus 17 qiCqiCGD~VG~~------~~Ge~FVAC~eC~FPvCrpCyEYErke--G~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLT------VEGDLFVACNECGFPACRPCYEYERRE--GTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBC------SSSSBCCSCSSSCCCCCHHHHHHHHHT--SCSSCTTTCCCCC
T ss_pred CccccccCccccC------CCCCEEEeeeccCChhhHHHHHHHHhc--cCccccccCCccc
Confidence 6899999997652 111111222358888899998765554 7999999998774
No 91
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=71.76 E-value=3.3 Score=37.38 Aligned_cols=50 Identities=16% Similarity=0.410 Sum_probs=36.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCc--chHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC--FHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv--FH~~CI~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
-.|+|=+..|+. |.....|.|+ |-..=+...... ...-.||+|.+...|.
T Consensus 216 L~CPlS~~ri~~------------P~Rg~~C~HlqCFDl~sfL~~~~~-~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTI------------PCRAVTCTHLQCFDAALYLQMNEK-KPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSS------------EEEETTCCCCCCEEHHHHHHHHHH-SCCCBCTTTCSBCCGG
T ss_pred eeCCCccceecc------------CCcCCCCCCCccCCHHHHHHHHhh-CCCeECCCCCcccCHH
Confidence 479988888866 6777789999 775544444433 3578999999987764
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.01 E-value=0.87 Score=33.13 Aligned_cols=53 Identities=23% Similarity=0.577 Sum_probs=35.6
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCcccccc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~e~~~~ 219 (220)
..++.|.||...= ..+.--.|.-.||..|+.+=|.. ..+.-.||.|+..-..|
T Consensus 23 ~n~~~C~vC~~~g-------------~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 23 DSATICRVCQKPG-------------DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK 76 (88)
T ss_dssp SSSSCCSSSCSSS-------------CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSC
T ss_pred CCCCcCcCcCCCC-------------CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccc
Confidence 4557899997541 12333359999999999776544 23466799998765544
No 93
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=69.98 E-value=2.8 Score=42.40 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=40.4
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCC-CcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCS-HCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg-HvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
++.-.|+|-++-|.+ |+++. -| +.|-+.+|..||.. +.+||+=|+++.
T Consensus 889 P~~F~cPIs~~lM~D------------PVilp-sG~~TydR~~I~~wl~~---~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD------------PVILP-ASKMNIDRSTIKAHLLS---DSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSBCSS------------EEECT-TTCCEEEHHHHHHHHTT---CCBCTTTCCBCC
T ss_pred cHHhCCcchhhHHhC------------CeEcC-CCCEEECHHHHHHHHhc---CCCCCCCCCCCC
Confidence 345689999999988 67766 65 68999999999998 889999888764
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.07 E-value=0.89 Score=33.65 Aligned_cols=38 Identities=13% Similarity=0.333 Sum_probs=25.7
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN 201 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~ 201 (220)
..++.|.||...=+. +..+.-..|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~----------~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL----------LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT----------TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC----------cCCeECCCCCCCcChHHhCCccc
Confidence 456889999775321 01123346999999999987764
No 95
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.30 E-value=6.2 Score=30.50 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=31.5
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHH------Hh--CCCCCCCCCcCcc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWL------NS--QQVHHQCPMCRQE 215 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL------~~--~~~~~sCPvCR~e 215 (220)
..++.|.||.+.=+. +.--.|-.+||..||.+=+ +. ..+.=.|++|+-.
T Consensus 55 g~~~~C~vC~dGG~L-------------lcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNL-------------ICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCCSEE-------------EECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCCCee-------------EecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345678888654221 1222499999999999752 22 2346789999753
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.81 E-value=0.26 Score=32.39 Aligned_cols=48 Identities=27% Similarity=0.679 Sum_probs=31.1
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQ 214 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~ 214 (220)
..+..|.||...= ..+.--.|...||..|+.+-|.. ..+.-.||.|..
T Consensus 7 ~~~~~C~vC~~~g-------------~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG-------------QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS-------------CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC-------------eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3457899998641 12333359999999999875543 123456888854
No 97
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=66.74 E-value=0.8 Score=31.59 Aligned_cols=51 Identities=20% Similarity=0.447 Sum_probs=32.6
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-CCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-QVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-~~~~sCPvCR~e~~ 217 (220)
..|.||...... +..+.--.|.--||..|+..-+... .+.-.||.|+....
T Consensus 19 ~~C~~C~~~~~~----------~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPDDG----------SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCCSS----------CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCCCCC----------CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 569999876532 1122222499999999997644321 24678999987543
No 98
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=65.80 E-value=1.3 Score=39.78 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred cceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC----CCCCCCCCcCccc
Q psy14827 147 VATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ----QVHHQCPMCRQEW 216 (220)
Q Consensus 147 ~~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~----~~~~sCPvCR~e~ 216 (220)
...|..+.....|.+|...|..-.. .-.--.||++||..|-..++... ....+|-.|-..+
T Consensus 366 ~p~w~~~~~~~~c~~c~~~f~~~~r---------~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 366 PPTLVPVTHVMMCMNCGCDFSLTLR---------RHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCcCCCcccCCcCCCcCCCCCCcch---------hhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4467777778899999999964100 01112499999999998765321 1256777775543
No 99
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=65.08 E-value=0.44 Score=36.62 Aligned_cols=51 Identities=18% Similarity=0.364 Sum_probs=26.8
Q ss_pred ecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 150 WRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 150 ~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
|.++.....|..|...|..--. .-.--.||.+||..|....... ..+|-.|
T Consensus 13 ~~Pd~~~~~C~~C~~~Fs~~~R---------kHHCR~CG~ifC~~Cs~~~~~~---vRVC~~C 63 (120)
T 1y02_A 13 PSPTGLEPSCKSCGAHFANTAR---------KQTCLDCKKNFCMTCSSQVGNG---PRLCLLC 63 (120)
T ss_dssp -------CCCTTTCCCCSSGGG---------CEECTTTCCEECGGGEEC-------CCEEHHH
T ss_pred CcCccccCcccCcCCccccccc---------cccCCCCCCeeCHHHhCCCCCC---ceECHHH
Confidence 4445556789999999964100 1112249999999996655444 5556555
No 100
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.20 E-value=0.31 Score=35.48 Aligned_cols=50 Identities=26% Similarity=0.570 Sum_probs=31.5
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQ 214 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~ 214 (220)
++..|.||...-.. +..+.--.|...||..|+.+=|.. ..+.=.||.|+.
T Consensus 15 ~~~~C~vC~~~~~~----------~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDED----------DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGG----------GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCC----------CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44679999876432 112222359999999999754433 123556999965
No 101
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.29 E-value=11 Score=26.10 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=15.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
..|+-|-..+.. ..+. .-+..||.+|+
T Consensus 26 ~~C~~C~~~I~~------------~~~~-a~~~~~H~~CF 52 (89)
T 1x64_A 26 PLCDKCGSGIVG------------AVVK-ARDKYRHPECF 52 (89)
T ss_dssp CBCTTTCCBCCS------------CCEE-SSSCEECTTTC
T ss_pred CCcccCCCEecc------------cEEE-ECCceECccCC
Confidence 467777777754 1222 25667776663
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=63.15 E-value=4.1 Score=27.56 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=22.4
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceec-CCCCcchHHHHH
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWG-QCSHCFHIHCIM 197 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~-~CgHvFH~~CI~ 197 (220)
....|.+|..++.+. ..-+.-- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~---------~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDD---------QDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTT---------SCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCC---------CCeEecccCccccCchhccC
Confidence 346899999998652 1112222 499999999985
No 103
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.31 E-value=1.1 Score=30.13 Aligned_cols=38 Identities=21% Similarity=0.573 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCCCCCCceecC---CCCcchHHHHHHHHHh
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQ---CSHCFHIHCIMKWLNS 202 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~---CgHvFH~~CI~~WL~~ 202 (220)
..|+-|.-.++- .+++.-++-. |+|.|++.|..+|-..
T Consensus 7 k~CP~C~~~Iek--------~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEK--------DGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSS--------CCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEe--------CCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 579999888876 3445444443 9999999999999754
No 104
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=60.76 E-value=3 Score=28.73 Aligned_cols=28 Identities=39% Similarity=0.857 Sum_probs=20.4
Q ss_pred CC-CcchHHHHHHHHHhC-CCCCCCCCcCccc
Q psy14827 187 CS-HCFHIHCIMKWLNSQ-QVHHQCPMCRQEW 216 (220)
Q Consensus 187 Cg-HvFH~~CI~~WL~~~-~~~~sCPvCR~e~ 216 (220)
|. .-||..||. |... .+.-.||.|+..-
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 65 689999998 4431 3577899998753
No 105
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.52 E-value=4.4 Score=28.13 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=30.6
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--CCCCCCCCcCcc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--QVHHQCPMCRQE 215 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~~~~sCPvCR~e 215 (220)
..| ||...+.+. ...+.--.|..-||..|+.-=.... ...-.||.|+..
T Consensus 13 ~~C-~C~~~~d~~---------~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 13 VYC-LCRQPYNVN---------HFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCS-TTSCSCCSS---------SCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred cEE-EcCCccCCC---------CceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 457 998887431 1123333599999999996322210 137789999864
No 106
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=58.80 E-value=1.5 Score=33.03 Aligned_cols=24 Identities=29% Similarity=0.981 Sum_probs=16.1
Q ss_pred CCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217 (220)
Q Consensus 186 ~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~ 217 (220)
.||+.|. ..-.....||.|+.+|-
T Consensus 72 ~CG~~F~--------~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK--------AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC--------CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec--------ccCCCCCCCcCCCCCcc
Confidence 3999991 11122688999999863
No 107
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=57.19 E-value=4.3 Score=30.24 Aligned_cols=12 Identities=25% Similarity=0.913 Sum_probs=11.2
Q ss_pred chHHHHHHHHHh
Q psy14827 191 FHIHCIMKWLNS 202 (220)
Q Consensus 191 FH~~CI~~WL~~ 202 (220)
||..|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 108
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=56.52 E-value=4.5 Score=30.09 Aligned_cols=12 Identities=42% Similarity=1.041 Sum_probs=11.1
Q ss_pred chHHHHHHHHHh
Q psy14827 191 FHIHCIMKWLNS 202 (220)
Q Consensus 191 FH~~CI~~WL~~ 202 (220)
||..|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 109
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.60 E-value=0.68 Score=33.33 Aligned_cols=52 Identities=15% Similarity=0.429 Sum_probs=33.5
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH-----hCCCCCCCCCcCcc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN-----SQQVHHQCPMCRQE 215 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~-----~~~~~~sCPvCR~e 215 (220)
+..|.||...-.. .++..+.--.|...||..|+.+=|. ...+.=.|+.|+..
T Consensus 16 ~~~C~vC~~~~~~--------~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVA--------SGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCC--------TTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCC--------CCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 3679999876321 0111222235999999999987664 23456789988754
No 110
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=55.58 E-value=0.86 Score=30.87 Aligned_cols=47 Identities=28% Similarity=0.631 Sum_probs=31.0
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQ 214 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~ 214 (220)
.+..|.||...= ..+.--.|.-.||..|+.+-|.. ..+.=.||.|..
T Consensus 7 ~~~~C~vC~~~g-------------~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDGG-------------ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCCS-------------SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCCC-------------CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 457899998531 12333359999999999865543 123556988865
No 111
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.51 E-value=6.9 Score=27.26 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=7.0
Q ss_pred ccccccccccc
Q psy14827 157 DTCGICRIAFE 167 (220)
Q Consensus 157 ~~CaICLe~f~ 167 (220)
..|+.|-..+.
T Consensus 26 ~~C~~C~~~I~ 36 (90)
T 2dar_A 26 PMCAHCNQVIR 36 (90)
T ss_dssp CBBSSSCCBCC
T ss_pred CCCccCCCEec
Confidence 45777766663
No 112
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=53.30 E-value=2.3 Score=31.04 Aligned_cols=47 Identities=21% Similarity=0.438 Sum_probs=29.5
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
..| ||-.....+ ..+.--.|.-.||..|+..=+..-...-.||.|+.
T Consensus 29 vrC-iC~~~~~~~----------~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG----------YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS----------CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC----------cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 467 887665431 12333469999999999753222112568999974
No 113
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=51.45 E-value=15 Score=26.46 Aligned_cols=37 Identities=30% Similarity=0.532 Sum_probs=26.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS 202 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~ 202 (220)
-.|.+|.+.+++- ..- .||.+ =.|-||..|-...++.
T Consensus 16 l~CtlC~erLEdt-HFV-----QCPsv---~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 16 LCCTICHERLEDT-HFV-----QCPSV---PSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCCSSSCSCCSST-TSE-----ECSSC---SSCEECHHHHHHHHHH
T ss_pred eEeecchhhhccC-cee-----eCCCc---cCCeeeccccHHHHHh
Confidence 5799999999871 111 12222 4799999999999986
No 114
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=50.44 E-value=3.9 Score=33.37 Aligned_cols=53 Identities=17% Similarity=0.422 Sum_probs=32.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHH------Hh--CCCCCCCCCcCcc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWL------NS--QQVHHQCPMCRQE 215 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL------~~--~~~~~sCPvCR~e 215 (220)
..|+||...|.+.+.. ..-+.--.|..-||..|+.-=- .. ....-.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~------~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYE------SKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTT------CCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccC------CCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 3599999999773210 0122223599999999985311 10 0015799999875
No 115
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.14 E-value=4.9 Score=26.58 Aligned_cols=52 Identities=19% Similarity=0.502 Sum_probs=33.0
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--CCCCCCCCcCcc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--QVHHQCPMCRQE 215 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~~~~sCPvCR~e 215 (220)
+...|+||...+.+. ...+.--.|..-||..|+.--.... ...-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~---------~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAAD---------EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSS---------SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCC---------CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 446799999888541 1122223599999999986432210 136789999753
No 116
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=48.62 E-value=25 Score=25.80 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=22.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHH
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIM 197 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~ 197 (220)
...|.+|+..=... . ....+..+.-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~---~-~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQN---R-EKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCC---T-TSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhC---c-CCCchhceEhhhcCCCCCCchhc
Confidence 35799998763221 0 00112233345699999999995
No 117
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=45.20 E-value=4.9 Score=31.70 Aligned_cols=49 Identities=18% Similarity=0.459 Sum_probs=30.4
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh--CCCCCCCCCcCc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS--QQVHHQCPMCRQ 214 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~--~~~~~sCPvCR~ 214 (220)
...| ||.....+. +..+.--.|...||..|+.--... ....-.||.|+.
T Consensus 8 ~~~C-~C~~~~~~~---------~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 8 KLYC-ICKTPEDES---------KFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CEET-TTTEECCTT---------SCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CcEe-eCCCCCCCC---------CCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 3568 998876431 112222359999999999632211 123778999975
No 118
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=45.02 E-value=3.3 Score=35.01 Aligned_cols=31 Identities=35% Similarity=0.788 Sum_probs=19.6
Q ss_pred cCCCCcchHHHHHHHHHh-CCC-CCCCCCcCcc
Q psy14827 185 GQCSHCFHIHCIMKWLNS-QQV-HHQCPMCRQE 215 (220)
Q Consensus 185 ~~CgHvFH~~CI~~WL~~-~~~-~~sCPvCR~e 215 (220)
-.|...||..|+.+=|.. ..+ .=.||.|+.+
T Consensus 193 D~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 193 DECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 359999999999865544 123 4579999764
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.70 E-value=6.7 Score=29.15 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=23.4
Q ss_pred cccccccccccccCCCCCCCCC-CCCceecCCCCcchHHHHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGD-DCPLVWGQCSHCFHIHCIMKW 199 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~-~~~~~~~~CgHvFH~~CI~~W 199 (220)
+.|.||+..-... . ..++ +..+.-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n---~-k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMN---K-KSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBC---T-TTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCcccc---c-cCCCCCCCeEeCCCCCccchhhCCCh
Confidence 4699998764210 0 0011 123333469999999999865
No 120
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=44.56 E-value=3.2 Score=29.74 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=31.9
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e 215 (220)
.+..|.||...-... .+..+.--.|.-.||..|+..-+ ...+.=.||.|...
T Consensus 24 ~~~~C~vC~~~~s~~--------~~~ll~CD~C~~~fH~~Cl~p~~-vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQN--------SNVILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCS--------EEEEEECSSSCCCCCHHHHTCSS-CCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCC--------CCCEEECCCCCchhhcccCCCCc-cCCCceECccccCc
Confidence 457899998653110 01122223598999999998643 22456779888754
No 121
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=43.31 E-value=9.9 Score=30.07 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
.+..|++|...|.-. .....+-..|+|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l--------~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLL--------LNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGC--------SSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccc--------cCCCCcCCCCCchhhcccc
Confidence 347899999998652 1223444569999999985
No 122
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.74 E-value=8.7 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=21.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIM 197 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~ 197 (220)
..|.+|...|..- .. .-.--.||++|+..|-.
T Consensus 12 ~~C~~C~~~F~~~------~R---rHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLL------NR---KHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTT------BC---CEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCc------cc---cccCCCCCEEEcccccC
Confidence 5899999999641 00 11112499999999964
No 123
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=42.69 E-value=2.6 Score=27.98 Aligned_cols=26 Identities=35% Similarity=0.879 Sum_probs=18.6
Q ss_pred CC-CcchHHHHHHHHHhC-CCCCCCCCcCc
Q psy14827 187 CS-HCFHIHCIMKWLNSQ-QVHHQCPMCRQ 214 (220)
Q Consensus 187 Cg-HvFH~~CI~~WL~~~-~~~~sCPvCR~ 214 (220)
|. .-||..|+. |... .++-.||.|++
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 689999998 4331 34678998865
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.43 E-value=7.2 Score=32.10 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=22.3
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHH
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIM 197 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~ 197 (220)
+..|.+|...|..-. . .-.--.||++||..|..
T Consensus 161 ~~~C~~C~~~F~~~~-----r----rhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTN-----R----KHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSS-----C----CEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcc-----c----ccccCCcCCEEChHHhC
Confidence 468999999996410 0 11112499999999964
No 125
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.17 E-value=7.6 Score=32.26 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=22.8
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~ 198 (220)
+..|.+|...|..-.. .-.--.||++||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~R---------rhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTR---------KHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBC---------CEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCcccc---------ccccCCCcCEeChhhcCC
Confidence 3589999999964210 111124999999999653
No 126
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=40.85 E-value=9.3 Score=21.83 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=18.9
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
+.|+.|-..+-.. -....-|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~------------Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPT------------EKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGG------------GCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecc------------eeEEECCeEecccCC
Confidence 5799998888652 111226789998883
No 127
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=40.24 E-value=19 Score=24.59 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=31.9
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
..+..|.||...-.. .++..+.--.|.-.||..|+..=+ ...+.=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~--------~~~~ll~CD~C~~~~H~~Cl~~~~-vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQ--------NSNVILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCC--------SSSCEEECSSSCCEEEHHHHTCSS-CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCC--------CCCCEEECCCCCCccccccCCCCc-CCCCCcCCccCcC
Confidence 355789999875311 011122223599999999997532 2234667888864
No 128
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.71 E-value=12 Score=25.36 Aligned_cols=36 Identities=22% Similarity=0.460 Sum_probs=23.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+-|-..+.. ..+. .-+..||.+|+ .|-.|+..+
T Consensus 16 ~~C~~C~~~I~~------------~~~~-a~~~~~H~~CF-----------~C~~C~~~L 51 (79)
T 1x62_A 16 PMCDKCGTGIVG------------VFVK-LRDRHRHPECY-----------VCTDCGTNL 51 (79)
T ss_dssp CCCSSSCCCCCS------------SCEE-CSSCEECTTTT-----------SCSSSCCCH
T ss_pred CccccCCCCccC------------cEEE-ECcceeCcCcC-----------eeCCCCCCC
Confidence 579999988864 2222 26788888774 366666543
No 129
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.15 E-value=9.2 Score=28.15 Aligned_cols=52 Identities=19% Similarity=0.450 Sum_probs=31.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceec-CCCCcchHHHHHHHHH-------hCCCCCCCCCcCcccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWG-QCSHCFHIHCIMKWLN-------SQQVHHQCPMCRQEWK 217 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~-~CgHvFH~~CI~~WL~-------~~~~~~sCPvCR~e~~ 217 (220)
..|.||...+.+. +..+.-- .|.--||..|+.-=.. .....-.||.|+....
T Consensus 4 ~~C~iC~~p~~~~---------~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDD---------QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTT---------SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCC---------CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4799999998552 1111111 4899999999852110 0012678999986543
No 130
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.03 E-value=11 Score=24.60 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=7.8
Q ss_pred cccccccccccc
Q psy14827 157 DTCGICRIAFEG 168 (220)
Q Consensus 157 ~~CaICLe~f~~ 168 (220)
..|+.|-..+.+
T Consensus 6 ~~C~~C~~~I~~ 17 (70)
T 2d8x_A 6 SGCHQCGEFIIG 17 (70)
T ss_dssp SBCSSSCCBCCS
T ss_pred CcCccCCCEecc
Confidence 467777777643
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=38.79 E-value=8.5 Score=27.45 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=22.2
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~ 198 (220)
...|.+|...|..- .. .-.--.||++||..|...
T Consensus 9 ~~~C~~C~~~F~~~------~R---rHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF------KK---EYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSS------SC---EEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCc------cc---cccCCCCCCEEChhHcCC
Confidence 35799999999641 00 011124999999999643
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.74 E-value=9.4 Score=25.53 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=25.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+.|-..+... ..+. .-+..||.+|+ .|-.|+..+
T Consensus 10 ~~C~~C~~~I~~~-----------~~v~-a~~~~~H~~CF-----------~C~~C~~~L 46 (76)
T 2cu8_A 10 SKCPKCDKTVYFA-----------EKVS-SLGKDWHKFCL-----------KCERCSKTL 46 (76)
T ss_dssp CBCTTTCCBCCTT-----------TEEE-ETTEEEETTTC-----------BCSSSCCBC
T ss_pred CCCcCCCCEeECC-----------eEEE-ECCeEeeCCCC-----------CCCCCCCcc
Confidence 6799999998642 2233 36888998774 477777654
No 133
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=37.40 E-value=20 Score=28.69 Aligned_cols=17 Identities=24% Similarity=0.882 Sum_probs=14.4
Q ss_pred CCCCcchHHHHHHHHHh
Q psy14827 186 QCSHCFHIHCIMKWLNS 202 (220)
Q Consensus 186 ~CgHvFH~~CI~~WL~~ 202 (220)
.|...||..||..++-.
T Consensus 98 ~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TTCCEEEHHHHHHHTCT
T ss_pred CCCCchhHHHHHHhcCH
Confidence 48899999999988754
No 134
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.63 E-value=3.2 Score=27.43 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=13.0
Q ss_pred HHHHhCCCCCCCCCcCcccccc
Q psy14827 198 KWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 198 ~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
+||.. --.||+|+.++.+.
T Consensus 5 ~~lL~---iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 5 AGLLE---ILACPACHAPLEER 23 (56)
T ss_dssp CSCTT---SCCCSSSCSCEEEE
T ss_pred HHHHh---heeCCCCCCcceec
Confidence 34444 67899998877654
No 135
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=35.56 E-value=4 Score=28.55 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=12.7
Q ss_pred CCCCcchHHHHHHH
Q psy14827 186 QCSHCFHIHCIMKW 199 (220)
Q Consensus 186 ~CgHvFH~~CI~~W 199 (220)
.|||.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999998877
No 136
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.46 E-value=4.8 Score=27.63 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=14.0
Q ss_pred HHHHHhCCCCCCCCCcCcccccc
Q psy14827 197 MKWLNSQQVHHQCPMCRQEWKFK 219 (220)
Q Consensus 197 ~~WL~~~~~~~sCPvCR~e~~~~ 219 (220)
++||.. --.||+|+.++.|.
T Consensus 4 d~~LLe---iL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLE---VLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTC---CCBCTTTCCBCEEE
T ss_pred CHHHHH---HhCCCCCCCcCeEe
Confidence 345666 77889998877653
No 137
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.35 E-value=14 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=19.0
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
..|+.|-..+.+. ..+. .-+..||.+|+
T Consensus 16 ~~C~~C~~~I~~~-----------e~v~-a~~~~wH~~CF 43 (82)
T 2co8_A 16 DLCALCGEHLYVL-----------ERLC-VNGHFFHRSCF 43 (82)
T ss_dssp CBCSSSCCBCCTT-----------TBCC-BTTBCCBTTTC
T ss_pred CCCcccCCCcccc-----------eEEE-ECCCeeCCCcC
Confidence 5799999988542 1222 25778998885
No 138
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=35.34 E-value=3.8 Score=27.16 Aligned_cols=26 Identities=38% Similarity=0.897 Sum_probs=18.6
Q ss_pred CC-CcchHHHHHHHHHh-CCCCCCCCCcCc
Q psy14827 187 CS-HCFHIHCIMKWLNS-QQVHHQCPMCRQ 214 (220)
Q Consensus 187 Cg-HvFH~~CI~~WL~~-~~~~~sCPvCR~ 214 (220)
|. ..||..|+. |.. ..+.-.||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 679999998 443 135778998865
No 139
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=34.32 E-value=3.3 Score=29.09 Aligned_cols=30 Identities=37% Similarity=0.813 Sum_probs=21.0
Q ss_pred CCCCcchHHHHHHHHHh-CCCC-CCCCCcCcc
Q psy14827 186 QCSHCFHIHCIMKWLNS-QQVH-HQCPMCRQE 215 (220)
Q Consensus 186 ~CgHvFH~~CI~~WL~~-~~~~-~sCPvCR~e 215 (220)
.|...||..|+.+-|.. ..+. =.||.|+++
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 59999999999876654 1223 579999863
No 140
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.31 E-value=15 Score=24.00 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=17.8
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
..|+-|-..+... ..++..-+..||.+|+
T Consensus 6 ~~C~~C~~~I~~~-----------~~~~~a~~~~~H~~CF 34 (72)
T 1wyh_A 6 SGCSACGETVMPG-----------SRKLEYGGQTWHEHCF 34 (72)
T ss_dssp CBCSSSCCBCCSS-----------SCEECSTTCCEETTTC
T ss_pred CCCccCCCccccC-----------ccEEEECccccCcccC
Confidence 5688888888641 0222235777887764
No 141
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=33.67 E-value=7.7 Score=24.75 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=27.3
Q ss_pred ccccccccccccCCCCCCCCCCCCceec-CCCCcchHHHHHHHHHh-CCCCCCCCCcC
Q psy14827 158 TCGICRIAFEGCCSDCKLPGDDCPLVWG-QCSHCFHIHCIMKWLNS-QQVHHQCPMCR 213 (220)
Q Consensus 158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~-~CgHvFH~~CI~~WL~~-~~~~~sCPvCR 213 (220)
.|.||..++.++ ..-+.-- .|.--||..|+.--... ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~---------~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK---------VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT---------CCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC---------CcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888887541 1112222 48889999998632211 01378899885
No 142
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.45 E-value=15 Score=23.87 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=7.9
Q ss_pred cccccccccccc
Q psy14827 157 DTCGICRIAFEG 168 (220)
Q Consensus 157 ~~CaICLe~f~~ 168 (220)
..|+-|-..+..
T Consensus 6 ~~C~~C~~~I~~ 17 (69)
T 2cur_A 6 SGCVKCNKAITS 17 (69)
T ss_dssp CCCSSSCCCCCT
T ss_pred CCCcccCCEeCc
Confidence 467777777643
No 143
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.74 E-value=14 Score=28.59 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
.+..|++|...|.-. .....+-..|+|.+|..|-
T Consensus 54 ~~~~C~~C~~~~g~l--------~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGML--------GSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTT--------SCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccc--------cCCCCCCCCCCcccccccC
Confidence 347899999999420 1112333459999988873
No 144
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.47 E-value=30 Score=25.32 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=6.6
Q ss_pred cccccccccccc
Q psy14827 157 DTCGICRIAFEG 168 (220)
Q Consensus 157 ~~CaICLe~f~~ 168 (220)
..|+-|-..+..
T Consensus 6 ~~C~~C~~~I~~ 17 (122)
T 1m3v_A 6 KRCAGCGGKIAD 17 (122)
T ss_dssp CCBSSSSSCCCS
T ss_pred CCCcccCCEeCC
Confidence 346666665544
No 145
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=32.25 E-value=11 Score=28.25 Aligned_cols=37 Identities=16% Similarity=0.540 Sum_probs=25.9
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+-|-..+.+ ..++..-+..||..|+ .|-.|+..+
T Consensus 62 ~~C~~C~~~I~~------------~~~v~a~~~~wH~~CF-----------~C~~C~~~L 98 (123)
T 2l4z_A 62 KRCAGCGGKIAD------------RFLLYAMDSYWHSRCL-----------KCSSCQAQL 98 (123)
T ss_dssp SBBSSSSSBCCS------------SSEEEETTEEEETTTS-----------BCTTTCCBG
T ss_pred CcCcCCCCCcCC------------cEEEEeCCcEEccccc-----------CcCcCCCcc
Confidence 579999998865 2222237888998884 477777765
No 146
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.21 E-value=19 Score=23.43 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=7.9
Q ss_pred cccccccccccc
Q psy14827 157 DTCGICRIAFEG 168 (220)
Q Consensus 157 ~~CaICLe~f~~ 168 (220)
..|+.|-..+..
T Consensus 6 ~~C~~C~~~I~~ 17 (70)
T 2d8z_A 6 SGCVQCKKPITT 17 (70)
T ss_dssp CBCSSSCCBCCS
T ss_pred CCCcccCCeecc
Confidence 467777777743
No 147
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=32.10 E-value=33 Score=24.29 Aligned_cols=33 Identities=30% Similarity=0.701 Sum_probs=22.3
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~ 198 (220)
..|.||...=.-.++.|..+ .|.-.||..|-..
T Consensus 18 l~C~iC~~~~~GAciqC~~~---------~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 18 LTCYLCKQKGVGASIQCHKA---------NCYTAFHVTCAQK 50 (87)
T ss_dssp CCBTTTTBCCSSCEEECSCT---------TTCCEEEHHHHHH
T ss_pred CCCcCCCCCCCcEeEecCCC---------CCCCcCcHHHHHH
Confidence 57999975422334444444 3999999999764
No 148
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.70 E-value=17 Score=24.61 Aligned_cols=36 Identities=17% Similarity=0.395 Sum_probs=22.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+-|-..+.+ ..+. .-+..||.+|+ .|-.|+..+
T Consensus 16 ~~C~~C~~~I~~------------~~v~-a~~~~~H~~CF-----------~C~~C~~~L 51 (79)
T 2cor_A 16 YICQKCHAIIDE------------QPLI-FKNDPYHPDHF-----------NCANCGKEL 51 (79)
T ss_dssp CBCTTTCCBCCS------------CCCC-CSSSCCCTTTS-----------BCSSSCCBC
T ss_pred CCCccCCCEecc------------eEEE-ECcceeCCCCC-----------EeCCCCCcc
Confidence 579999888864 1121 25677887664 466666554
No 149
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.38 E-value=15 Score=24.02 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=17.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
..|+.|-..+... + ..+. .-+..||.+|+
T Consensus 6 ~~C~~C~~~I~~~---------~-~~~~-a~~~~~H~~CF 34 (72)
T 1x4k_A 6 SGCQECKKTIMPG---------T-RKME-YKGSSWHETCF 34 (72)
T ss_dssp CCBSSSCCCCCSS---------S-CEEE-ETTEEEETTTT
T ss_pred CCCccCCCcccCC---------c-eEEE-ECcCeecccCC
Confidence 4688888887641 0 1222 25677887764
No 150
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.96 E-value=7.6 Score=27.11 Aligned_cols=29 Identities=28% Similarity=0.748 Sum_probs=21.2
Q ss_pred CCCCcchHHHHHHHHHh-CCC-CCCCCCcCc
Q psy14827 186 QCSHCFHIHCIMKWLNS-QQV-HHQCPMCRQ 214 (220)
Q Consensus 186 ~CgHvFH~~CI~~WL~~-~~~-~~sCPvCR~ 214 (220)
.|...||..|+.+=|.. ..+ .=.||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 59999999999865543 123 457999875
No 151
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.33 E-value=14 Score=23.78 Aligned_cols=36 Identities=28% Similarity=0.756 Sum_probs=23.3
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+.|-..+.. ..+ ..-+..||.+|+ .|-.|+..+
T Consensus 6 ~~C~~C~~~I~~------------~~~-~a~~~~~H~~CF-----------~C~~C~~~L 41 (66)
T 1nyp_A 6 PICGACRRPIEG------------RVV-NAMGKQWHVEHF-----------VCAKCEKPF 41 (66)
T ss_dssp CEETTTTEECCS------------CEE-CCTTSBEETTTC-----------BCTTTCCBC
T ss_pred CCCcccCCEecc------------eEE-EECccccccCcC-----------EECCCCCCC
Confidence 578889888853 222 236778887774 466676654
No 152
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.94 E-value=18 Score=24.66 Aligned_cols=37 Identities=16% Similarity=0.524 Sum_probs=24.7
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+-|-..+.++ ..+.. -+..||.+|+ .|-.|+..+
T Consensus 16 ~~C~~C~~~I~~~-----------~~v~a-~~~~wH~~CF-----------~C~~C~~~L 52 (80)
T 2dj7_A 16 SHCAGCKEEIKHG-----------QSLLA-LDKQWHVSCF-----------KCQTCSVIL 52 (80)
T ss_dssp SCCTTTCCCCSSS-----------CCEEE-TTEEECTTTC-----------BCSSSCCBC
T ss_pred CCCcCcCCeeCCC-----------eEEEE-CCcccccccC-----------CcCcCCCCc
Confidence 5799999988652 12222 5788998774 477776654
No 153
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.59 E-value=19 Score=23.51 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=7.0
Q ss_pred ccccccccccc
Q psy14827 157 DTCGICRIAFE 167 (220)
Q Consensus 157 ~~CaICLe~f~ 167 (220)
..|+.|-..+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1x61_A 6 SGCGGCGEDVV 16 (72)
T ss_dssp CCCSSSCSCCC
T ss_pred CCCccCCCccC
Confidence 45777766664
No 154
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=29.07 E-value=5.9 Score=26.50 Aligned_cols=27 Identities=33% Similarity=0.896 Sum_probs=18.8
Q ss_pred CC-CcchHHHHHHHHHh-CCCCCCCCCcCcc
Q psy14827 187 CS-HCFHIHCIMKWLNS-QQVHHQCPMCRQE 215 (220)
Q Consensus 187 Cg-HvFH~~CI~~WL~~-~~~~~sCPvCR~e 215 (220)
|. .-||..||. |.. ..++-.||.|+..
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 55 789999997 332 1346789998753
No 155
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.96 E-value=24 Score=23.48 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=8.0
Q ss_pred cccccccccccc
Q psy14827 157 DTCGICRIAFEG 168 (220)
Q Consensus 157 ~~CaICLe~f~~ 168 (220)
..|+-|-..+..
T Consensus 6 ~~C~~C~~~I~~ 17 (73)
T 1wig_A 6 SGCDSCEKYITG 17 (73)
T ss_dssp CSCSSSCCCCSS
T ss_pred CCcccCCCEecC
Confidence 467777777744
No 156
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.65 E-value=18 Score=24.31 Aligned_cols=36 Identities=28% Similarity=0.689 Sum_probs=24.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+.|-..+.. ..+.. -+..||.+|+ .|-.|+..+
T Consensus 16 ~~C~~C~~~I~~------------~~v~a-~~~~wH~~CF-----------~C~~C~~~L 51 (81)
T 1v6g_A 16 TRCFSCDQFIEG------------EVVSA-LGKTYHPDCF-----------VCAVCRLPF 51 (81)
T ss_dssp CBCTTTCCBCCS------------CCEEE-TTEEECTTTS-----------SCSSSCCCC
T ss_pred CcCccccCEecc------------ceEEE-CCceeCccCC-----------ccccCCCCC
Confidence 479999888853 22332 6888998874 466776654
No 157
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.23 E-value=17 Score=24.52 Aligned_cols=27 Identities=15% Similarity=0.556 Sum_probs=16.3
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
..|+-|-..+.+ ..+.. -+..||..|+
T Consensus 16 ~~C~~C~~~I~~------------~~~~a-~~~~~H~~CF 42 (81)
T 2dlo_A 16 EKCATCSQPILD------------RILRA-MGKAYHPGCF 42 (81)
T ss_dssp CBCTTTCCBCCS------------CCEEE-TTEEECTTTC
T ss_pred CccccCCCeecc------------eeEEE-CCccccHHhc
Confidence 467788777753 22222 5677777664
No 158
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.89 E-value=19 Score=23.82 Aligned_cols=39 Identities=26% Similarity=0.662 Sum_probs=24.3
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
...|+-|-..+... + .++.. -|..||.+|+ .|-.|+..+
T Consensus 11 ~~~C~~C~~~I~~~---------~-~~~~a-~~~~~H~~CF-----------~C~~C~~~L 49 (77)
T 1g47_A 11 SATCERCKGGFAPA---------E-KIVNS-NGELYHEQCF-----------VCAQCFQQF 49 (77)
T ss_dssp CCBCSSSCCBCCST---------T-TCEEE-TTEEECTTTC-----------CCTTTCCCC
T ss_pred CCCchhcCCccCCC---------c-eEEEe-CccEeccccC-----------eECCCCCCC
Confidence 36799999988531 1 22222 5778887774 466666554
No 159
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.78 E-value=22 Score=23.82 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=24.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+.|-..+..+ + ..+. .-+..||.+|+ .|-.|+..+
T Consensus 16 ~~C~~C~~~I~~~--------~--~~~~-a~~~~~H~~CF-----------~C~~C~~~L 53 (82)
T 1x63_A 16 PKCKGCFKAIVAG--------D--QNVE-YKGTVWHKDCF-----------TCSNCKQVI 53 (82)
T ss_dssp CBCSSSCCBCCSS--------S--CEEE-CSSCEEETTTC-----------CCSSSCCCC
T ss_pred CcCccCCcccccC--------c--eEEE-ECccccccccC-----------chhhCCCcc
Confidence 5799998888642 0 2222 25778887774 477776654
No 160
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.63 E-value=34 Score=31.06 Aligned_cols=29 Identities=17% Similarity=0.701 Sum_probs=20.6
Q ss_pred CCCCcchHHHHHHHHHhC-------CCCCCCCCcCc
Q psy14827 186 QCSHCFHIHCIMKWLNSQ-------QVHHQCPMCRQ 214 (220)
Q Consensus 186 ~CgHvFH~~CI~~WL~~~-------~~~~sCPvCR~ 214 (220)
.|...||..||..++-.. ...=.|=+|.-
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 599999999999998321 12456777753
No 161
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.41 E-value=23 Score=23.19 Aligned_cols=40 Identities=20% Similarity=0.495 Sum_probs=22.9
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+-|-..+... + +...+. .-+..||.+|+ .|-.|+..+
T Consensus 6 ~~C~~C~~~I~~~-------~-~~~~~~-a~~~~wH~~CF-----------~C~~C~~~L 45 (72)
T 1x4l_A 6 SGCAGCTNPISGL-------G-GTKYIS-FEERQWHNDCF-----------NCKKCSLSL 45 (72)
T ss_dssp CSBTTTTBCCCCS-------S-SCSCEE-CSSCEECTTTC-----------BCSSSCCBC
T ss_pred CCCcCCCccccCC-------C-CcceEE-ECCcccCcccC-----------EeccCCCcC
Confidence 5688888887530 0 001222 26778887774 466666543
No 162
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=27.31 E-value=25 Score=25.16 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=16.1
Q ss_pred hhccCCCCCCCCCCccccccc
Q psy14827 48 NERKNLKHPPPPSPQAIRVWT 68 (220)
Q Consensus 48 ~~~~~~~~~~~~~~~~~r~w~ 68 (220)
.+++.|++|++|.=..-|+||
T Consensus 61 ~eL~~LiPP~~P~~g~yr~FG 81 (84)
T 3fbi_A 61 CALDYLIPPPMPKNQQYRAFG 81 (84)
T ss_dssp SGGGGGSCCCCCSSGGGSCSC
T ss_pred HHHhccCCCCCCCCCCeeecC
Confidence 478899999998756666665
No 163
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.16 E-value=18 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=8.5
Q ss_pred cccccccccccc
Q psy14827 157 DTCGICRIAFEG 168 (220)
Q Consensus 157 ~~CaICLe~f~~ 168 (220)
..|+.|-+.+.+
T Consensus 16 ~~C~~C~~~I~~ 27 (81)
T 1x6a_A 16 EFCHGCSLLMTG 27 (81)
T ss_dssp CBCTTTCCBCCS
T ss_pred CcCccCCCCcCc
Confidence 468888877753
No 164
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.87 E-value=24 Score=24.42 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=8.0
Q ss_pred cccccccccccc
Q psy14827 157 DTCGICRIAFEG 168 (220)
Q Consensus 157 ~~CaICLe~f~~ 168 (220)
..|+-|-..+..
T Consensus 16 ~~C~~C~~~I~~ 27 (91)
T 2d8y_A 16 ETCVECQKTVYP 27 (91)
T ss_dssp CBCTTTCCBCCT
T ss_pred CcCccCCCccCC
Confidence 467777777754
No 165
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=25.77 E-value=7.4 Score=26.56 Aligned_cols=30 Identities=37% Similarity=0.813 Sum_probs=22.0
Q ss_pred CCCCcchHHHHHHHHHh-CCC-CCCCCCcCcc
Q psy14827 186 QCSHCFHIHCIMKWLNS-QQV-HHQCPMCRQE 215 (220)
Q Consensus 186 ~CgHvFH~~CI~~WL~~-~~~-~~sCPvCR~e 215 (220)
.|...||..|+.+=|.. ..+ .=.||.|+.+
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 59999999999865543 123 5589999764
No 166
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=25.34 E-value=15 Score=24.48 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=7.9
Q ss_pred CCcccccccccccc
Q psy14827 155 NDDTCGICRIAFEG 168 (220)
Q Consensus 155 ~~~~CaICLe~f~~ 168 (220)
.--.|..|...+..
T Consensus 26 ~CF~C~~C~~~L~~ 39 (76)
T 1iml_A 26 PCLKCEKCGKTLTS 39 (76)
T ss_dssp TTCBCTTTCCBCCT
T ss_pred CCCCccccCccCCC
Confidence 34566666666543
No 167
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=25.19 E-value=7 Score=27.52 Aligned_cols=20 Identities=25% Similarity=0.697 Sum_probs=14.9
Q ss_pred ceecCCCCcchHHHHHHHHH
Q psy14827 182 LVWGQCSHCFHIHCIMKWLN 201 (220)
Q Consensus 182 ~~~~~CgHvFH~~CI~~WL~ 201 (220)
+.-..|+|.||..|-.+|-.
T Consensus 44 v~C~~C~~~FC~~C~~~w~~ 63 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEE 63 (86)
T ss_dssp EECTTTCCEECSSSCSBCCT
T ss_pred eEeCCCCCccccccCCchhh
Confidence 33346999999999888833
No 168
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.54 E-value=21 Score=26.31 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=8.1
Q ss_pred ccccccccccc
Q psy14827 158 TCGICRIAFEG 168 (220)
Q Consensus 158 ~CaICLe~f~~ 168 (220)
.|+.|-..+..
T Consensus 10 ~C~~C~~~I~~ 20 (123)
T 2l3k_A 10 LCASCDKRIRA 20 (123)
T ss_dssp CCSSSSCCCCT
T ss_pred cccCCCCeecC
Confidence 68888887754
No 169
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.51 E-value=21 Score=23.70 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=24.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
..|+.|-..+.. + ++. ..+. .-+..||.+|+ .|-.|+..+
T Consensus 6 ~~C~~C~~~I~~------~-g~~-~~~~-a~~~~wH~~CF-----------~C~~C~~~L 45 (76)
T 1x68_A 6 SGCVACSKPISG------L-TGA-KFIC-FQDSQWHSECF-----------NCGKCSVSL 45 (76)
T ss_dssp CCCTTTCCCCCT------T-TTC-CEEE-ETTEEEEGGGC-----------BCTTTCCBC
T ss_pred CCCccCCCcccC------C-CCc-eeEE-ECCcccCcccC-----------ChhhCCCcC
Confidence 579999988863 0 011 2222 36788998885 366666544
No 170
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=24.28 E-value=11 Score=25.50 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=17.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
..|+.|-..+.+. ..+. .-+..||.+|+
T Consensus 8 ~~C~~C~~~I~~~-----------~~~~-a~~~~~H~~CF 35 (81)
T 1a7i_A 8 NKCGACGRTVYHA-----------EEVQ-CDGRSFHRCCF 35 (81)
T ss_dssp CBCSSSCCBCSST-----------TEEE-ETTEEEESSSE
T ss_pred CcCcCcCccccCc-----------eeEE-eCCcccccccC
Confidence 5688888887542 1222 25677777664
No 171
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.98 E-value=46 Score=22.48 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=29.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh------CCCCCCCCCcCcc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS------QQVHHQCPMCRQE 215 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~------~~~~~sCPvCR~e 215 (220)
..| ||...+.. +..+.--.|..-||..|+.--... ....-.||.|+..
T Consensus 17 ~~C-~C~~~~~~----------~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNN----------RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCS----------SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCC----------CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 457 89887643 112222359999999999532110 0137889999753
No 172
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.70 E-value=17 Score=27.01 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=27.1
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCceec---CCCCcchHHHHHHHHHh-CCCCCCCCCcC
Q psy14827 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWG---QCSHCFHIHCIMKWLNS-QQVHHQCPMCR 213 (220)
Q Consensus 154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~---~CgHvFH~~CI~~WL~~-~~~~~sCPvCR 213 (220)
..++.|.+|.+. . .++.- .|-..||..|+. |.. ..+.=.||-|+
T Consensus 13 ~~~~~C~~C~~~-G-------------~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGDG-G-------------ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCCC-S-------------EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCcCCCC-C-------------cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 355789999832 1 12222 388999999997 443 12345688654
No 173
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.63 E-value=7.7 Score=26.35 Aligned_cols=47 Identities=23% Similarity=0.530 Sum_probs=28.3
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~ 214 (220)
..| ||...+.. +..+.--.|..-||..|+.-=...-...-.||.|+.
T Consensus 20 ~~C-iC~~~~~~----------~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFAG----------RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCTT----------CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred eEe-ECCCcCCC----------CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 468 99876542 112333359999999999632111013677888865
No 174
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.72 E-value=35 Score=24.65 Aligned_cols=11 Identities=0% Similarity=-0.037 Sum_probs=5.0
Q ss_pred CCcchHHHHHH
Q psy14827 188 SHCFHIHCIMK 198 (220)
Q Consensus 188 gHvFH~~CI~~ 198 (220)
|.+||..|-..
T Consensus 52 g~~yC~~~y~~ 62 (114)
T 1j2o_A 52 GRKLCRRDYLR 62 (114)
T ss_dssp TBCCCHHHHHH
T ss_pred CeeechHHHHH
Confidence 34455555433
No 175
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.02 E-value=36 Score=21.82 Aligned_cols=39 Identities=23% Similarity=0.606 Sum_probs=25.0
Q ss_pred CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216 (220)
Q Consensus 156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~ 216 (220)
...|+-|-..+... ..++..=+..||..|. .|-.|...+
T Consensus 11 ~~~C~~C~~~i~~~-----------e~~~~~~~~~~H~~CF-----------~C~~C~~~L 49 (72)
T 3f6q_B 11 SATCERCKGGFAPA-----------EKIVNSNGELYHEQCF-----------VCAQCFQQF 49 (72)
T ss_dssp TCBCTTTCCBCCTT-----------CEEEEETTEEEETTTS-----------SCTTTCCCC
T ss_pred CccchhcCccccCC-----------ceEEEeCcCeeCcCCC-----------cccCCCCCC
Confidence 36799999988642 1222236778998875 366666654
No 176
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=21.98 E-value=23 Score=23.55 Aligned_cols=43 Identities=23% Similarity=0.582 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC 212 (220)
..|--|...|.+.. ...-..|++.|+.+| +..+- +.=..||-|
T Consensus 16 ~~C~~C~~~~~~~~----------~y~C~~C~~~FC~dC-D~fiH--e~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH----------VYVCAVCQNVFCVDC-DVFVH--DSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE----------EECCTTTTCCBCHHH-HHTTT--TTSCSSSTT
T ss_pred CcccccCcccCCCc----------cEECCccCcCcccch-hHHHH--hhccCCcCC
Confidence 46999999985410 123456999999999 22222 235678887
No 177
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.49 E-value=25 Score=20.90 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=7.9
Q ss_pred CCCCCcCccc
Q psy14827 207 HQCPMCRQEW 216 (220)
Q Consensus 207 ~sCPvCR~e~ 216 (220)
..||+|.+.+
T Consensus 6 FiCP~C~~~l 15 (34)
T 3mjh_B 6 FICPQCMKSL 15 (34)
T ss_dssp EECTTTCCEE
T ss_pred cCCcHHHHHc
Confidence 5799998754
No 178
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.36 E-value=31 Score=22.97 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=16.5
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
..|+.|-..+.. ..+. .-+..||.+|+
T Consensus 16 ~~C~~C~~~I~~------------~~v~-a~~~~~H~~CF 42 (80)
T 2cuq_A 16 PRCARCSKTLTQ------------GGVT-YRDQPWHRECL 42 (80)
T ss_dssp CCCTTTCCCCCS------------CCEE-SSSSEECTTTC
T ss_pred CcCCCCCCEecC------------cEEE-ECCchhhhhhC
Confidence 468888877744 1222 25677887664
No 179
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.30 E-value=27 Score=23.27 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=16.2
Q ss_pred cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHH
Q psy14827 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCI 196 (220)
Q Consensus 157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI 196 (220)
..|+.|-..+.+ ..+. .-+..||.+|+
T Consensus 16 ~~C~~C~~~I~~------------~~v~-a~~~~~H~~CF 42 (80)
T 1x3h_A 16 PKCGGCNRPVLE------------NYLS-AMDTVWHPECF 42 (80)
T ss_dssp CBCTTTCCBCCS------------SCEE-ETTEEECTTTC
T ss_pred CccccCCCeecc------------eeEE-ECCCeEecCcC
Confidence 468888877754 1222 25667777663
No 180
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.75 E-value=22 Score=20.26 Aligned_cols=10 Identities=30% Similarity=0.952 Sum_probs=7.9
Q ss_pred CCCCCCcCcc
Q psy14827 206 HHQCPMCRQE 215 (220)
Q Consensus 206 ~~sCPvCR~e 215 (220)
+..||+|+..
T Consensus 3 k~~CpvCk~q 12 (28)
T 2jvx_A 3 DFCCPKCQYQ 12 (28)
T ss_dssp CEECTTSSCE
T ss_pred cccCcccccc
Confidence 5679999874
Done!