RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14827
(220 letters)
>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2
finger. Apc11 is one of the subunits of the
anaphase-promoting complex or cyclosome. The APC
subunits are cullin family proteins with ubiquitin
ligase activity. Polyubiquitination marks proteins for
degradation by the 26S proteasome and is carried out by
a cascade of enzymes that includes ubiquitin-activating
enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and
ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and
is responsible for recruiting E2s to the APC and for
mediating the subsequent transfer of ubiquitin to APC
substrates in vivo. In Saccharomyces cerevisiae this
RING-H2 finger protein defines the minimal ubiquitin
ligase activity of the APC, and the integrity of the
RING-H2 finger is essential for budding yeast cell
viability.
Length = 85
Score = 136 bits (343), Expect = 1e-41
Identities = 46/78 (58%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 144 WTGVATWRW-VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS 202
W VATW W +DD CGICR++F+G C CK PGDDCPLVWG+C H FH+HCI+KWL +
Sbjct: 8 WNAVATWTWDTPSDDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLAT 67
Query: 203 QQVHHQCPMCRQEWKFKE 220
+ CPMCRQ + F E
Sbjct: 68 ETSKGLCPMCRQTFVFAE 85
>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger. There are 8 cysteine/
histidine residues which are proposed to be the
conserved residues involved in zinc binding. The
protein, of which this domain is the conserved region,
participates in diverse functions relevant to chromosome
metabolism and cell cycle control.
Length = 73
Score = 113 bits (285), Expect = 5e-33
Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
W VA W W DD C ICR F+G C +CK PGDDCP+VWG+C H FH+HCI +WL ++
Sbjct: 7 WNAVALWSWDIEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTR 66
Query: 204 QVHHQCPMCR 213
CP+CR
Sbjct: 67 NT---CPLCR 73
>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and
anaphase-promoting complex [Posttranslational
modification, protein turnover, chaperones / Cell
division and chromosome partitioning].
Length = 88
Score = 94.1 bits (234), Expect = 3e-25
Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCK---LPGDDCPLVWGQCSHCFHIHCIMKWL 200
W VA W W D C ICR G C +C+ PGD+CP+VWG C+H FH HCI +WL
Sbjct: 8 WHAVALWSWDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWL 67
Query: 201 NSQQVHHQCPMCRQEWKF 218
+++ V CP+ RQ W
Sbjct: 68 DTKGV---CPLDRQTWVL 82
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 47.8 bits (114), Expect = 4e-08
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
D C IC FE LP C H FH C+ KWL S + CP+CR
Sbjct: 1 DECPICLDEFEPGEEVVVLP----------CGHVFHKECLDKWLRS---SNTCPLCRAP 46
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a
specialized type of Zn-finger of 40 to 60 residues that
binds two atoms of zinc; defined by the 'cross-brace'
motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified in
a proteins with a wide range of functions such as viral
replication, signal transduction, and development; has
two variants, the C3HC4-type and a C3H2C3-type (RING-H2
finger), which have different cysteine/histidine
pattern; a subset of RINGs are associated with B-Boxes
(C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 45.1 bits (107), Expect = 4e-07
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 14/59 (23%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
C IC F P+V C H F CI KWL S + CP+CR
Sbjct: 1 ECPICLEEF------------REPVVLLPCGHVFCRSCIDKWLKSG--KNTCPLCRTPI 45
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 46.9 bits (111), Expect = 3e-06
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 148 ATWRWVANDD-TCGICRIAFEGCCSDCKLPGDDCPLVWGQ--------CSHCFHIHCIMK 198
AT + N D TC IC D D PL G C H H+HC+
Sbjct: 278 ATEEQLTNSDRTCTICM--------DEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKN 329
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL QQ CP+CR+ F +
Sbjct: 330 WLERQQT---CPICRRPVIFDQ 348
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 1525
Score = 43.9 bits (103), Expect = 4e-05
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218
C IC + D LP C C + FH C+ KW S CP+CR E F
Sbjct: 1472 CAICYSVLDM--VDRSLPSKRCA----TCKNKFHTRCLYKWFASSA-RSNCPLCRSEITF 1524
>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 374
Score = 40.4 bits (94), Expect = 3e-04
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C H FH+ C+ KWL ++CP+CR
Sbjct: 344 CDHRFHVGCVDKWLLGYS--NKCPVCRTA 370
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and is
likely to be a general function of this domain; Various
RING fingers exhibit binding activity towards E2
ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 34.4 bits (79), Expect = 0.002
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 170 CSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212
C C P V C H F CI KWL S ++ CP+C
Sbjct: 1 CPICLEEYLKDP-VILPCGHTFCRSCIRKWLESG--NNTCPIC 40
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 32.5 bits (74), Expect = 0.013
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 15/60 (25%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
+ C IC L D P+V C H F CI+++L + +CP+CR
Sbjct: 1 EELECPIC----------LDLLRD--PVVLTPCGHVFCRECILRYL---KKKSKCPICRT 45
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 271
Score = 31.8 bits (72), Expect = 0.21
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
C H F + C++ ++ CP+CR
Sbjct: 233 CGHLFCLSCLLISWTKKKYEF-CPLCRA 259
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 28.6 bits (64), Expect = 0.25
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMC 212
C H F CI+ WL S V CP+C
Sbjct: 16 PCGHLFCSKCILSWLESGNV--TCPLC 40
>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional.
Length = 242
Score = 31.2 bits (70), Expect = 0.29
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ---VHHQC 209
V+ + CGIC +E S +L D + C+H F I CI W +++ C
Sbjct: 167 VSKEKECGIC---YEVVYSK-RLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNC 222
Query: 210 PMCRQEWK 217
P+CR ++
Sbjct: 223 PICRTRFR 230
>gnl|CDD|233339 TIGR01278, DPOR_BchB, light-independent protochlorophyllide
reductase, B subunit. Alternate name: dark
protochlorophyllide reductase This enzyme describes the
B subunit of the dark form protochlorophyllide
reductase, a nitrogenase-like enzyme. This subunit shows
homology to the nitrogenase molybdenum-iron protein. It
catalyzes a step in bacteriochlorophyll biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 511
Score = 30.5 bits (69), Expect = 0.64
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 87 GLENEEISSSDMTVGESRSPSETEPGWESNPRPSAHKA-DQVTRLAKSKA 135
G + T S +P+ E GW A +V + K
Sbjct: 437 GHDTPAHLEPAATAAISSAPAPGELGWT----AEAEAELKKVPFFVRGKV 482
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain.
Length = 109
Score = 28.8 bits (65), Expect = 0.80
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 13/52 (25%)
Query: 147 VATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198
+ RW C C+ G C C +G+C FH+ C
Sbjct: 49 IPKERW---KLKCCFCK-KRSGACIQCS---------YGRCQTSFHVTCARA 87
>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional.
Length = 238
Score = 29.7 bits (67), Expect = 1.0
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218
C+H F I CI W ++ + CP+CR +
Sbjct: 200 CNHVFCIECIDIW---KKEKNTCPVCRTPFIS 228
>gnl|CDD|204746 pfam11793, FANCL_C, FANCL C-terminal domain. This domain is found
at the C-terminus of the Fancl protein in humans which
is the putative E3 ubiquitin ligase subunit of the FA
complex (Fanconi anaemia). Eight subunits of the Fanconi
anaemia gene products form a multisubunit nuclear
complex which is required for mono-ubiquitination of a
downstream FA protein, FANCD2.
Length = 70
Score = 27.8 bits (62), Expect = 1.2
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 19/67 (28%)
Query: 159 CGICRIAFEGCCSDCKLPGDDCPLVW---GQCSHCFHIHCIMKWLNSQQVHHQ------- 208
CGIC L G + P + +C FHI C+ +WL + + Q
Sbjct: 5 CGICYAYR--------LDGGEIPDISCDNPKCGLPFHIACLYEWLRTLRDSRQSFNVSFG 56
Query: 209 -CPMCRQ 214
CP C+
Sbjct: 57 TCPYCKA 63
>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger
like motif found in a number of cellular and viral
proteins. Some of these proteins have been shown both
in vivo and in vitro to have ubiquitin E3 ligase
activity. The RING-variant domain is reminiscent of both
the RING and the PHD domains and may represent an
evolutionary intermediate. To describe this domain the
term PHD/LAP domain has been used in the past. Extended
description: The RING-variant (RINGv) domain contains a
C4HC3 zinc-finger-like motif similar to the PHD domain,
while some of the spacing between the Cys/His residues
follow a pattern somewhat closer to that found in the
RING domain. The RINGv domain, similar to the RING, PHD
and LIM domains, is thought to bind two zinc ions
co-ordinated by the highly conserved Cys and His
residues. RING variant domain: C-x (2) -C-x(10-45)-C-x
(1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a
PHD: C-x(1-2) -C-x
(7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C
Classical RING domain: C-x (2) -C-x
(9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C.
Length = 49
Score = 26.9 bits (60), Expect = 1.6
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 161 ICRIAFEGCCSDCKLPGDDC-PLVWG-QCS---HCFHIHCIMKWLNSQQVHHQCPMCR 213
ICRI C GD+ PLV +C H C+ +W+N C +C+
Sbjct: 1 ICRI--------CHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGN-KTCEICK 49
>gnl|CDD|225566 COG3022, COG3022, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 253
Score = 28.8 bits (65), Expect = 2.0
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 29 PGQAETLAKIKENLQGEESNERKNLKHPPPPSPQAIRVWTLRSPFNKILDTALQRRAY 86
P Q +L KI + L G + ++ + P+ QAI FN + T L
Sbjct: 43 PNQISSLMKISDKLAGLNAQRFQDWETQFTPARQAILA------FNGDVYTGLDAETL 94
>gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 368
Score = 29.0 bits (66), Expect = 2.0
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 83 RRAYGLENEEISSSDMTVGESRSPSETEPGWE 114
RRAYGL+ I S T R P + W+
Sbjct: 13 RRAYGLDEIAIVPSRRT----RDPEDVSTSWQ 40
>gnl|CDD|201356 pfam00628, PHD, PHD-finger. PHD folds into an interleaved type of
Zn-finger chelating 2 Zn ions in a similar manner to
that of the RING and FYVE domains. Several PHD fingers
have been identified as binding modules of methylated
histone H3.
Length = 51
Score = 26.3 bits (58), Expect = 2.4
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 170 CSDCKLPGDDCPLVW-GQCSHCFHIHCI---MKWLNSQQVHHQCPMCRQE 215
C+ C DD L+ C FH+ C+ ++ + CP C+ +
Sbjct: 2 CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECKPK 51
>gnl|CDD|218790 pfam05876, Terminase_GpA, Phage terminase large subunit (GpA).
This family consists of several phage terminase large
subunit proteins as well as related sequences from
several bacterial species. The DNA packaging enzyme of
bacteriophage lambda, terminase, is a heteromultimer
composed of a small subunit, gpNu1, and a large subunit,
gpA, products of the Nu1 and A genes, respectively.
Terminase is involved in the site-specific binding and
cutting of the DNA in the initial stages of packaging.
It is now known that gpA is actively involved in late
stages of packaging, including DNA translocation, and
that this enzyme contains separate functional domains
for its early and late packaging activities.
Length = 552
Score = 28.7 bits (65), Expect = 2.7
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 7/37 (18%)
Query: 187 CSHCFHIHCI----MKW---LNSQQVHHQCPMCRQEW 216
C HC + +KW + + CP C
Sbjct: 203 CPHCGEEQELRWERLKWDKGEAPETARYVCPHCGCVI 239
>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal
transduction mechanisms].
Length = 391
Score = 28.1 bits (62), Expect = 4.4
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218
C H F CI + L +Q CP+CR++
Sbjct: 43 CGHTFCSLCIRRHLGTQPF---CPVCREDPCE 71
>gnl|CDD|235300 PRK04447, PRK04447, hypothetical protein; Provisional.
Length = 351
Score = 27.9 bits (63), Expect = 4.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 147 VATWRWVANDDTCGICRIA 165
+AT RWVA D + +A
Sbjct: 265 IATTRWVAEDKSADFKGLA 283
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 27.9 bits (62), Expect = 5.9
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 31 QAETLAKIKENLQGEESNERKNLKHPPPPSPQAIRVWTLRSPFNKILDTALQRRAYGLEN 90
+ E L+ E+ P + +R SPFNK + L R A N
Sbjct: 1360 VQSGQKLLTEMLKPAEAIGI-----SPEKKVRKMR----ASPFNKKSGSVLGRAA---TN 1407
Query: 91 EEISSSDMTVGESRSPSETEPGWESNPRPSAHKADQVTR 129
+E SS+ G S S + E + PRP Q T
Sbjct: 1408 KETESSENVSGSS-SSEKDEIDVSAKPRPQRANRKQTTY 1445
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger. The plant homeodomain (PHD)
finger is a C4HC3 zinc-finger-like motif found in
nuclear proteins thought to be involved in epigenetics
and chromatin-mediated transcriptional regulation. The
PHD finger binds two zinc ions using the so-called
'cross-brace' motif and is thus structurally related to
the RING finger and the FYVE finger. It is not yet known
if PHD fingers have a common molecular function. Several
reports suggest that it can function as a
protein-protein interacton domain and it was recently
demonstrated that the PHD finger of p300 can cooperate
with the adjacent BROMO domain in nucleosome binding in
vitro. Other reports suggesting that the PHD finger is a
ubiquitin ligase have been refuted as these domains were
RING fingers misidentified as PHD fingers.
Length = 47
Score = 24.9 bits (54), Expect = 6.7
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 170 CSDCKLPGDDCPLVW-GQCSHCFHIHC 195
CS C P D L+ C +H C
Sbjct: 2 CSVCGKPDDGGELLQCDGCDRWYHQTC 28
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18. All proteins in this
family for which functions are known are involved in
nucleotide excision repair.This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 397
Score = 27.3 bits (60), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
CSH F CI + L+ +CP+CR E
Sbjct: 44 CSHTFCSLCIRRCLS---NQPKCPLCRAE 69
>gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing
protein 9. PNPLA9 is a Ca-independent phospholipase
that catalyzes the hydrolysis of glycerophospholipids at
the sn-2 position. PNPLA9 is also known as PLA2G6
(phospholipase A2 group VI) or iPLA2beta. PLA2G6 is
stimulated by ATP and inhibited by bromoenol lactone
(BEL). In humans, PNPLA9 in expressed ubiquitously and
is involved in signal transduction, cell proliferation,
and apoptotic cell death. Mutations in human PLA2G6
leads to infantile neuroaxonal dystrophy (INAD) and
idiopathic neurodegeneration with brain iron
accumulation (NBIA). This family includes PLA2G6 from
Homo sapiens and Rattus norvegicus.
Length = 312
Score = 27.3 bits (61), Expect = 7.3
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 11/47 (23%)
Query: 45 EESNERKNLKHPPPPSPQAIRVW-TLRS---------PFNKILDTAL 81
E E+ PP P +W RS P + LD L
Sbjct: 129 VEEPEKNAN-FLPPTDPAEQLLWRAARSSGAAPTYFRPMGRFLDGGL 174
>gnl|CDD|237558 PRK13920, PRK13920, putative anti-sigmaE protein; Provisional.
Length = 206
Score = 26.7 bits (59), Expect = 8.7
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 102 ESRSPSETEPGWESN--PRPSAHKADQVTRLAKSKATPFNPMVGWTGVATWRWVA 154
E P PG E R + + LA++ A + G+ A W
Sbjct: 43 EGLPPVPVPPGLEERVLARLRPRRLPLLPLLARAAAALALLLAGYGLAAGLSWTL 97
>gnl|CDD|218222 pfam04710, Pellino, Pellino. Pellino is involved in Toll-like
signalling pathways, and associates with the kinase
domain of the Pelle Ser/Thr kinase.
Length = 416
Score = 26.7 bits (59), Expect = 9.9
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 189 HCFHIHCIMKW---LNSQQVHHQCPMCRQE 215
C H+H W +CP+CR
Sbjct: 308 QCGHVHGYHDWGHQEERGPRERECPLCRSV 337
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.130 0.432
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,530,599
Number of extensions: 906470
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 812
Number of HSP's successfully gapped: 40
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)