RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14827
(220 letters)
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 106 bits (267), Expect = 1e-30
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPG--DDCPLVWGQCSHCFHIHCIMKWLN 201
W W DTC ICR+ C C+ +DC +VWG+C+H FH C+ W+
Sbjct: 3 SGSSGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK 62
Query: 202 SQQVHHQCPMCRQEWKFKE 220
+++CP+C+Q+W +
Sbjct: 63 Q---NNRCPLCQQDWVVQR 78
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 93.0 bits (230), Expect = 1e-24
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMK 198
W VA W W D C ICR C +C+ ++C + WG C+H FH HCI +
Sbjct: 36 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 95
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL ++Q CP+ +EW+F++
Sbjct: 96 WLKTRQ---VCPLDNREWEFQK 114
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 91.4 bits (226), Expect = 3e-24
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMK 198
W VA W W D C ICR C +C+ ++C + WG C+H FH HCI +
Sbjct: 25 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 84
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL ++Q CP+ +EW+F++
Sbjct: 85 WLKTRQ---VCPLDNREWEFQK 103
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 53.5 bits (129), Expect = 5e-10
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212
V + C IC + +LP C H FH C+ WL CP+C
Sbjct: 37 VGQEMCCPICCSEYVKGDVATELP----------CHHYFHKPCVSIWLQK---SGTCPVC 83
Query: 213 RQE 215
R
Sbjct: 84 RCM 86
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 54.1 bits (129), Expect = 6e-10
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 153 VANDDTCGICRIAFEGCCS-----DCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ--V 205
VA ++ C IC D K G +CSH FH+ C++ +
Sbjct: 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDG 81
Query: 206 HHQCPMCRQEWKFKE 220
QCP C+ + K
Sbjct: 82 SLQCPSCKTIYGEKT 96
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 51.3 bits (123), Expect = 3e-09
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212
V + C +C+ + S +LP C+H FH CI+ WL H CP+C
Sbjct: 12 VGSGLECPVCKEDYALGESVRQLP----------CNHLFHDSCIVPWLEQ---HDSCPVC 58
Query: 213 RQE 215
R+
Sbjct: 59 RKS 61
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 50.2 bits (120), Expect = 7e-09
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
+ C +C F+ P C H FH C++KWL +V CP+C
Sbjct: 15 HELCAVCLEDFKPRDELGICP----------CKHAFHRKCLIKWL---EVRKVCPLCNMP 61
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 48.9 bits (117), Expect = 1e-08
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 17/63 (26%)
Query: 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212
+ +++ C IC +G +D LP C+H F CI KW + H CP+C
Sbjct: 12 LTDEEECCIC---MDGR-ADLILP----------CAHSFCQKCIDKWSDR---HRNCPIC 54
Query: 213 RQE 215
R +
Sbjct: 55 RLQ 57
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 49.2 bits (118), Expect = 1e-08
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 19/65 (29%)
Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDC---PLVWGQCSHCFHIHCIMKWLNSQQVHHQCP 210
+ C +C FE P C+H FH C+ KWL + + CP
Sbjct: 21 SEQTLCVVCMCDFE--------SRQLLRVLP-----CNHEFHAKCVDKWLKA---NRTCP 64
Query: 211 MCRQE 215
+CR +
Sbjct: 65 ICRAD 69
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 48.0 bits (115), Expect = 3e-08
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 12/60 (20%)
Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
+ C IC + C H H C + L ++CP+C
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVL---------PCGHLLHRTCYEEMLKE---GYRCPLCS 50
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 48.0 bits (114), Expect = 4e-08
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 170 CSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
C + G C C H+ C+ K+ S +CP C W
Sbjct: 21 CHSLLIQGQSCE----TCGIRMHLPCVAKYFQSNA-EPRCPHCNDYW 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 50.9 bits (121), Expect = 4e-08
Identities = 36/225 (16%), Positives = 63/225 (28%), Gaps = 21/225 (9%)
Query: 1 MSRSVLTYCTEKLSLKQINTISNKQQTYPGQAETLAKIKENLQGEESNERKNLKHPPPPS 60
M+ VL K + ++ T + + I L+ E K
Sbjct: 15 MTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLE-SLYIEIKRGVTEDDGR 73
Query: 61 PQAIRVWTLRSPFNKI--LDTALQRRAYGLENEEISSSDMTVGESRSPSETEPGWESNPR 118
P V + +K+ + + E I S+ S + +
Sbjct: 74 PIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGF-ASSTNILNLVDQLKGKK 132
Query: 119 PSAHKADQVTR-------LAKSKATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCS 171
+A+QV + L + + + + D IC I C
Sbjct: 133 MRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNI-----CH 187
Query: 172 DCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
+ G C C H+ C+ K+ S +CP C W
Sbjct: 188 SLLIQGQSCE----TCGIRMHLPCVAKYFQSNA-EPRCPHCNDYW 227
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 47.0 bits (112), Expect = 8e-08
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
+ C IC E + C H F CI +W+ + + CP+C+
Sbjct: 3 TVAERCPIC---LEDPSNYSMAL---------PCLHAFCYVCITRWI---RQNPTCPLCK 47
Query: 214 QE 215
Sbjct: 48 VP 49
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 50.2 bits (119), Expect = 1e-07
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ--------VH 206
+ C IC F ++P C +C H C+ +W +
Sbjct: 307 EELRCNIC---FAYRLDGGEVPLVSCDNA--KCVLKCHAVCLEEWFKTLMDGKTFLEVSF 361
Query: 207 HQCPMCRQEWKFK 219
QCP C+ +
Sbjct: 362 GQCPFCKAKLSTS 374
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 46.2 bits (110), Expect = 1e-07
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 19/64 (29%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDC---PLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM 211
++ C IC E G+D P C H FH C+ +WL + + +CP+
Sbjct: 13 TEEKCTICLSILE--------EGEDVRRLP-----CMHLFHQVCVDQWLIT---NKKCPI 56
Query: 212 CRQE 215
CR +
Sbjct: 57 CRVD 60
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 45.3 bits (108), Expect = 2e-07
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
+C H FH C+ WL S H CP+CR
Sbjct: 26 RCGHGFHAECVDMWLGS---HSTCPLCRL 51
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 43.0 bits (101), Expect = 2e-06
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
+ +C IC + ++ + +V +C H F C+ L + + CP CR
Sbjct: 13 SGTVSCPICMDGYS------EIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCR 63
Query: 214 QE 215
++
Sbjct: 64 KK 65
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 41.7 bits (98), Expect = 6e-06
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
+C IC + + +L V +C H F C+ L + + CP CR++
Sbjct: 5 SCPICMDGYSEIVQNGRLI------VSTECGHVFCSQCLRDSLKN---ANTCPTCRKK 53
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 40.6 bits (95), Expect = 2e-05
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
+C IC +G + C H F C+ L + + CP CR++
Sbjct: 12 SCPIC---MDGYSEIVQNGRLIVSTE---CGHVFCSQCLRDSLKN---ANTCPTCRKK 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 43.2 bits (101), Expect = 3e-05
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217
C H C+ W S+ CP CR E K
Sbjct: 350 CGHLMCTSCLTSWQESE--GQGCPFCRCEIK 378
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 40.6 bits (95), Expect = 4e-05
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
CS CI +WL Q QCP CR
Sbjct: 40 HCSKLCCFSCIRRWLTEQ--RAQCPHCRAP 67
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 37.8 bits (88), Expect = 2e-04
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 15/58 (25%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C IC+ + + C H F CI++ +CP C
Sbjct: 17 LCSICKGYLIDATTITE------------CLHTFCKSCIVRHFYYSN---RCPKCNIV 59
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 37.5 bits (87), Expect = 2e-04
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C H F C+ +C +CRQE
Sbjct: 33 CKHVFCYLCVKGASWLG---KRCALCRQE 58
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 37.1 bits (86), Expect = 6e-04
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 15/58 (25%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C +C F + + C H F CI+++L + CP+C +
Sbjct: 17 MCVLCGGYFIDATTIIE------------CLHSFCKTCIVRYL---ETSKYCPICDVQ 59
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 36.0 bits (83), Expect = 0.001
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
+C H F C ++ + +C +C Q
Sbjct: 32 KCRHYFCESCALEHF---RATPRCYICDQP 58
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 35.9 bits (83), Expect = 0.002
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C C + ++ QCSH + CI K+L+ + QCP C
Sbjct: 24 RCGICFEYFNIAMII-PQCSHNYCSLCIRKFLSYK---TQCPTCCVT 66
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 36.6 bits (84), Expect = 0.002
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 16/63 (25%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
N+ C IC F + L C+H F +CI +W+ +CP+CR+
Sbjct: 63 NELQCIICSEYFIEAVT---LN----------CAHSFCSYCINEWMKR---KIECPICRK 106
Query: 215 EWK 217
+ K
Sbjct: 107 DIK 109
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 35.1 bits (81), Expect = 0.002
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 11/59 (18%)
Query: 158 TCGICRIAFEGCCSDCK-LPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C IC +F K L C H C+ K L S +CP C +
Sbjct: 17 ECPICMESFTEEQLRPKLLH----------CGHTICRQCLEKLLASSINGVRCPFCSKI 65
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 34.6 bits (80), Expect = 0.002
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK 219
C H F + CI + + +CP+C+ +
Sbjct: 38 CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 35.5 bits (82), Expect = 0.002
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C H F C++K LN ++ QCP+C+ +
Sbjct: 39 CDHIFCKFCMLKLLNQKKGPSQCPLCKND 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.003
Identities = 32/217 (14%), Positives = 68/217 (31%), Gaps = 70/217 (32%)
Query: 25 QQTYPGQAETLAKIKENLQGEESNERKNLKHPPPPSPQ-AIRVWTLRSPFNKILDTALQR 83
+ YP + + ++++L+ E PSP +I ++ D +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEG----------VPSPMLSIS----NLTQEQVQDYVNKT 356
Query: 84 RAYGLENEEIS-----SSDMTV--GESRS---------PSETEPGWESNPRP-SAHKADQ 126
++ +++ + V G +S ++ G + + P S K
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 127 VTR-LAKSKATPFN-P-MVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLP------G 177
R L + +PF+ +V A+ + D ++F D ++P G
Sbjct: 417 SNRFLPVA--SPFHSHLLVP----ASDL-INKDLVKN--NVSFNA--KDIQIPVYDTFDG 465
Query: 178 DD--------------C----PLVWGQCSHCFHIHCI 196
D C P+ W + H +
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 28.5 bits (63), Expect = 2.5
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 53 LKHP------PPPSPQAIRVWTLRSPFNKILDTALQRRAYGLENEEISSSD 97
L H P+ L+ FNKIL + ++E + ++
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT--EGFAADDEPTTPAE 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.003
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 11 EKLSLKQINTISNKQQTY-PGQAETLAKIKENLQ 43
EK +LK+ + + Y A LA IK ++
Sbjct: 18 EKQALKK---LQASLKLYADDSAPALA-IKATME 47
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 35.7 bits (82), Expect = 0.003
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217
C H C+ + +Q CP CR +
Sbjct: 70 CQHNVCKDCLDRSFRAQV--FSCPACRYDLG 98
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 32.8 bits (75), Expect = 0.011
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C C L +C H F C+ L+S +C C++
Sbjct: 17 KCEKCHLVLCSP--KQTECGHRFCESCMAALLSSSS--PKCTACQES 59
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 33.0 bits (75), Expect = 0.020
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
C+H C + CP CR+
Sbjct: 33 CNHTLCKPCFQSTVEKAS--LCCPFCRRRV 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 31.6 bits (72), Expect = 0.021
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 12/62 (19%)
Query: 161 ICRIAFEGCCSDCKLPGDDCPLVWGQCS---HCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217
+C I E ++ C C+ H C+ WL + C +C +
Sbjct: 8 VCWICNEELGNERFRA---C-----GCTGELENVHRSCLSTWLTISRNTA-CQICGVVYN 58
Query: 218 FK 219
+
Sbjct: 59 TR 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 32.0 bits (73), Expect = 0.025
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C + + CI L H CP C Q
Sbjct: 34 CGNSYCDECIRTALLESD-EHTCPTCHQN 61
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 32.6 bits (74), Expect = 0.034
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 17/58 (29%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C C P+ G C H F +C+ + + CP+C
Sbjct: 24 RCSRCTNIL------------REPVCLGGCEHIFCSNCVSDCIGT-----GCPVCYTP 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 31.4 bits (71), Expect = 0.036
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 16/65 (24%)
Query: 161 ICRIAFEGCCSD------CKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
ICRI + C G H H C+ +W+ S C +C+
Sbjct: 17 ICRICHCEGDDESPLITPCHCTGS---------LHFVHQACLQQWIKSSDTRC-CELCKY 66
Query: 215 EWKFK 219
E+ +
Sbjct: 67 EFIME 71
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 32.2 bits (73), Expect = 0.040
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
C C+ D V C H F CI++ L CP CR
Sbjct: 25 SCQICEHILADP--VETSCKHLFCRICILRCLKVMG--SYCPSCRY 66
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 32.1 bits (73), Expect = 0.050
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
C C + + V C H F CI+K + H+CP+ +
Sbjct: 20 ECPICLMALREA--VQTPCGHRFCKACIIKSIRDAG--HKCPVDNE 61
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 32.6 bits (73), Expect = 0.075
Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 8/189 (4%)
Query: 33 ETLAKIKENLQGEESNERKNLKHPPPPSPQAIRVWTLRSPFNKILDTALQRRAYGLENEE 92
ET+ ++ ++ + + + + F++ + + +
Sbjct: 43 ETINQLVDSTSPSTIGIEEQVADITSTYKLLSTYESESNSFDEHIKDLKKNFKQSSDACP 102
Query: 93 ----ISSSDMTVGESRSPSETEPGWESNPRPSAHKADQVTRLAKSKATPFNPMVGWTGVA 148
+ GE +P +E A + L K P+ +
Sbjct: 103 QIDLSTWDKYRTGELTAPKLSELYLNMPTPEPATMVNNTDTLKILKVLPYIWNDPTCVIP 162
Query: 149 TWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQ 208
+ A++D I E C P + PL+ +C+H F I +L
Sbjct: 163 DLQNPADEDDLQIEGGKIELTCPITCKPYEA-PLISRKCNHVFDRDGIQNYL-QGYTTRD 220
Query: 209 CPM--CRQE 215
CP C Q
Sbjct: 221 CPQAACSQV 229
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 31.7 bits (71), Expect = 0.078
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
+C IC + + +L V +C H F C+ L + + CP CR+
Sbjct: 9 SCPICMDGYSEIVQNGRLI------VSTECGHVFCSQCLRDSLKNA---NTCPTCRK 56
Score = 30.1 bits (67), Expect = 0.27
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 150 WRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQC 209
+ +C IC + + + +V +C H F C+ L + + C
Sbjct: 66 IYIGSGTVSCPICMDGYSEIVQNGR------LIVSTECGHVFCSQCLRDSL---KNANTC 116
Query: 210 PMCRQE 215
P CR++
Sbjct: 117 PTCRKK 122
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 31.5 bits (71), Expect = 0.090
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C H C+ + +Q CP CR +
Sbjct: 96 CFHNVCKDCLQRSFKAQ--VFSCPACRHD 122
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 30.0 bits (68), Expect = 0.093
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMC 212
C H F CI +W + CP+C
Sbjct: 33 CGHNFCKACITRWWEDLERDFPCPVC 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 31.6 bits (71), Expect = 0.11
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
C C + + V C H F CI+K + H+CP+ +
Sbjct: 20 ECPICLMALREA--VQTPCGHRFCKACIIKSIRDAG--HKCPVDNE 61
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 31.2 bits (70), Expect = 0.13
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE 220
CS C+ QC H + C+ L+S C C E ++E
Sbjct: 33 LCSACRNVLRRP--FQAQCGHRYCSFCLASILSSGP--QNCAACVHEGIYEE 80
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 30.1 bits (68), Expect = 0.13
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C + + CI L H CP C Q
Sbjct: 32 CGNSYCDECIRTALLESD-EHTCPTCHQN 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 29.8 bits (67), Expect = 0.22
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 15/60 (25%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQ-----CPMC 212
C +C + P + + QC F C+ +++ CP
Sbjct: 7 GCKLCL---------GEYPVEQMTTI-AQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 29.3 bits (65), Expect = 0.27
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 11/63 (17%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
+ C +C L DD C + C + + CP CR+
Sbjct: 10 DPVECPLC---------MEPLEIDDINFFPCTCGYQICRFCWHRIRTDENG--LCPACRK 58
Query: 215 EWK 217
+
Sbjct: 59 PYP 61
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 28.5 bits (64), Expect = 0.27
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMC 212
C H F + CI + + +CP+C
Sbjct: 38 CGHNFCLKCITQIGETSCGFFKCPLC 63
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 28.7 bits (64), Expect = 0.34
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHC---FHIHCI-MKWLNSQQVHHQCPMCRQEWKFKE 220
C C P D P++ C C +H C+ + +++ CP C + K +
Sbjct: 20 ICPGCNKPDDGSPMI--GCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 28.9 bits (65), Expect = 0.35
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 187 CSHCFHIHCIMKWLNSQQVH---HQCPMCRQE 215
C+H F CI S + CP+CR
Sbjct: 37 CNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 28.4 bits (64), Expect = 0.59
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 187 CSHCFHIHCIMKWLNSQQVH---HQCPMCRQ 214
C H F C+ + CP+CR
Sbjct: 37 CGHSFCQACLTANHKKSMLDKGESSCPVCRI 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 29.2 bits (65), Expect = 0.72
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
C H F CI+ L S +CP CR+
Sbjct: 73 CLHRFCADCIITALRSGN--KECPTCRK 98
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit;
TFIIH, PH domain, phosphoinositides, VP16; NMR
{Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A
2k2u_A 2l2i_A 2lox_A*
Length = 115
Score = 28.2 bits (62), Expect = 0.95
Identities = 8/63 (12%), Positives = 22/63 (34%)
Query: 17 QINTISNKQQTYPGQAETLAKIKENLQGEESNERKNLKHPPPPSPQAIRVWTLRSPFNKI 76
++TI Q T + + ++ + + + P + + + R+ + I
Sbjct: 41 VLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMFSFNNRTVMDNI 100
Query: 77 LDT 79
T
Sbjct: 101 KMT 103
>1sfs_A Hypothetical protein; structural genomics, unknown function,
possible bacterial lysozyme, PSI, protein structure
initiative; 1.07A {Geobacillus stearothermophilus} SCOP:
c.1.8.8
Length = 240
Score = 28.9 bits (64), Expect = 1.2
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 8/89 (8%)
Query: 86 YGLENEEISSS--DMTVGESRSPSETEPGWESNPRPSAHKADQVTRLAKSKATPFNPMVG 143
Y + ++ V + + W + PRP + P P
Sbjct: 155 YADPTKGDFAAAYCEAVSRNNQVAVQAVIWSAAPRPGT-----TKEQKAPRYQPAAPP-C 208
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSD 172
V W++ + + C + + D
Sbjct: 209 SANVWVWQYGRDAEVCPVDTNLADRRLLD 237
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 27.2 bits (61), Expect = 1.2
Identities = 7/33 (21%), Positives = 8/33 (24%), Gaps = 4/33 (12%)
Query: 187 CSHCFHIHCIMKWLNSQQVH----HQCPMCRQE 215
C H CI CP+C
Sbjct: 30 CGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 26.6 bits (59), Expect = 1.2
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 6/29 (20%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C H C+ + QCP+C+
Sbjct: 24 CLHTLCSGCL------EASGMQCPICQAP 46
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 26.7 bits (59), Expect = 1.4
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSH-CFHIHCIMKWLNSQQVHHQCPMCR 213
+ C + C + D ++ G+ H HC + ++ CP+C+
Sbjct: 3 CQNLLKPCSL----CEKRPR----DGNIIHGRTGHLVTCFHCARRL---KKAGASCPICK 51
Query: 214 Q 214
+
Sbjct: 52 K 52
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei}
Length = 182
Score = 28.0 bits (62), Expect = 1.9
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Query: 32 AETLAKIKENLQGEESNERKNLKHPPPPSPQAIRVWTLRSPFNKILDTALQ-----RRAY 86
A + ++ E E +ER+ P P + I R+++
Sbjct: 1 AVSDQRLSEATLRELEDERQRAGLPEKPEIP--------EGW-TIDRKPGVTHFTMRKSH 51
Query: 87 GLENEEIS 94
G +EEI
Sbjct: 52 G--DEEII 57
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 26.9 bits (59), Expect = 2.6
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 169 CCSDCKLPGDDCPLVW-GQCSHCFHIHCIMKWLNSQQVHH-QCPMCR 213
C +CK G+D ++ C +H C+ + S + +C CR
Sbjct: 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCR 102
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 27.2 bits (59), Expect = 3.3
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 12/63 (19%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC---FHIHCIMKWLNSQQVHHQCPM 211
+ + C +C ++ DD QC C H C ++ P
Sbjct: 1 SGNFCPLCDKCYDD---------DDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPE 51
Query: 212 CRQ 214
Sbjct: 52 SVA 54
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding,
chromatin regulator, cytoplasm, hydrolase,
metal-binding, nucleus, phosphoprotein; 1.55A {Homo
sapiens} PDB: 3gv4_A 3phd_A
Length = 109
Score = 26.1 bits (57), Expect = 5.1
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 164 IAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQ 208
+ C DC + W C C+ ++C HH
Sbjct: 21 LDVTQPCGDCGTIQE----NW-VCLSCYQVYCGRYINGHMLQHHG 60
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 26.8 bits (58), Expect = 5.4
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 10/76 (13%)
Query: 155 NDDTCGICRIAFE-GCCSDC---------KLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ 204
+ C +C+ + C+ C D P CS C + + + S
Sbjct: 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLS 60
Query: 205 VHHQCPMCRQEWKFKE 220
+
Sbjct: 61 LDGADSTGVVAKLSPA 76
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A
{Human papillomavirus type 16} SCOP: d.58.8.1 PDB:
1by9_A 1r8p_A 1zzf_A 3mi7_X
Length = 93
Score = 25.4 bits (56), Expect = 6.5
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 149 TWRWVANDDTCGICRI 164
TW W ++ +
Sbjct: 34 TWHWTGHNVKHKSAIV 49
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 24.8 bits (54), Expect = 8.2
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 173 CKLPGDDCPLVW--GQCSHCFHIHCI-MKWLNSQQVHHQCPMCRQ 214
C DD + C H CI + ++ C C +
Sbjct: 21 CGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 25.9 bits (56), Expect = 8.3
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 21/69 (30%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVH-------- 206
D+ C C C D C + F CI++ L +++
Sbjct: 62 MDEQCRWCAEGGNLICCD-------------FCHNAFCKKCILRNLGRKELSTIMDENNQ 108
Query: 207 HQCPMCRQE 215
C +C E
Sbjct: 109 WYCYICHPE 117
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 26.5 bits (57), Expect = 8.6
Identities = 8/69 (11%), Positives = 13/69 (18%), Gaps = 18/69 (26%)
Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHH------ 207
C IC C+ C+ C+ +
Sbjct: 91 GYQSYCSICCSGETLLICGNP-----------DCTRCYCFECVDSLVGPGTSGKVHAMSN 139
Query: 208 -QCPMCRQE 215
C +C
Sbjct: 140 WVCYLCLPS 148
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 25.9 bits (56), Expect = 8.7
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 170 CSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHH-------QCPMCRQE 215
C+ C + C CF + C+ + C MC +
Sbjct: 82 CTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 26.1 bits (57), Expect = 9.0
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 162 CRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHC 195
C++ F C C +W H C
Sbjct: 237 CQLTFGPDSRHCPQLPPPCAALWCSGHLNGHAMC 270
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, MUR16; 2.00A {Methanocorpusculum labreanum}
Length = 210
Score = 25.9 bits (56), Expect = 9.4
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 188 SHCFHIHCIMKWLNS-QQVHHQ----CPMCRQE 215
HC + CIM + ++ + C CR +
Sbjct: 158 GHCDNPGCIMYCPRNLDELDRKRKYFCGKCRVQ 190
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 26.3 bits (57), Expect = 9.5
Identities = 5/59 (8%), Positives = 16/59 (27%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
F GC + +D L + + + + + + + + +
Sbjct: 368 PGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITF 426
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 24.4 bits (53), Expect = 9.9
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 179 DCPLVWGQCSH-CFHIHCIMKWLNSQQVHHQCPMCRQE 215
+ +V G+ H C K ++ + CP+CRQ
Sbjct: 20 NGCIVHGKTGHLMACFTCAKKL---KKRNKPCPVCRQP 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.432
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,336,030
Number of extensions: 184860
Number of successful extensions: 626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 126
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)