RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14827
(220 letters)
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 85.6 bits (211), Expect = 1e-22
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDD-----CPLVWGQCSHCFHIHCIMK 198
W VA W W D C ICR C +C+ C + WG C+H FH HCI +
Sbjct: 9 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 68
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
WL + CP+ +EW+F++
Sbjct: 69 WL---KTRQVCPLDNREWEFQK 87
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 48.7 bits (116), Expect = 6e-09
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
+ C +C E LP +C H FH C+ WL S H CP+CR
Sbjct: 4 DGVECAVCLAELEDGEEARFLP---------RCGHGFHAECVDMWLGS---HSTCPLCRL 51
Query: 215 E 215
Sbjct: 52 T 52
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 46.4 bits (109), Expect = 5e-08
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
D+ +C I E ++ H C+ WL + + C +C
Sbjct: 2 EDEDVPVCWICNEELGNERFRACGCTG-----ELENVHRSCLSTWLTISR-NTACQICGV 55
Query: 215 EWKFK 219
+ +
Sbjct: 56 VYNTR 60
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 46.2 bits (108), Expect = 2e-07
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 154 ANDDTCGICRIAFEGCCS-----DCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQV--H 206
A ++ C IC D K G +CSH FH+ C++ +
Sbjct: 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGS 82
Query: 207 HQCPMCRQEWKFK 219
QCP C+ + K
Sbjct: 83 LQCPSCKTIYGEK 95
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 42.3 bits (99), Expect = 2e-06
Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 12/65 (18%)
Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
T +C+I E P C H C+ W S+ CP CR E
Sbjct: 20 GSTFQLCKICAENDKDVKIEP----------CGHLMCTSCLTSWQESE--GQGCPFCRCE 67
Query: 216 WKFKE 220
K E
Sbjct: 68 IKGTE 72
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 41.3 bits (96), Expect = 4e-06
Identities = 10/65 (15%), Positives = 14/65 (21%), Gaps = 10/65 (15%)
Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
D C C+ L+ C H C+ CP C
Sbjct: 3 DQGCPRCKTTKY--------RNPSLKLMVNVCGHTLCESCVDLLFVRG--AGNCPECGTP 52
Query: 216 WKFKE 220
+
Sbjct: 53 LRKSN 57
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 40.7 bits (95), Expect = 5e-06
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 15/62 (24%)
Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
+ C IC + C H F CI +W+ + CP+C+
Sbjct: 5 AERCPICLEDPS------------NYSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVP 49
Query: 216 WK 217
+
Sbjct: 50 VE 51
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 39.7 bits (92), Expect = 3e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE 220
C H F C++K LN ++ QCP+C+ + +
Sbjct: 39 CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 33.7 bits (77), Expect = 0.001
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 6/29 (20%)
Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
C H C+ QCP+C+
Sbjct: 24 CLHTLCSGCLEAS------GMQCPICQAP 46
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.5 bits (79), Expect = 0.002
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
C H F CI++ L CP CR
Sbjct: 40 SCKHLFCRICILRCLKVMG--SYCPSCRY 66
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 33.5 bits (76), Expect = 0.002
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 11/59 (18%)
Query: 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217
C +C E DD C + C + + + CP CR+ +
Sbjct: 3 CPLCMEPLEI---------DDINFFPCTCGYQICRFCWHRIRTDE--NGLCPACRKPYP 50
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 29.0 bits (64), Expect = 0.14
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 17/63 (26%)
Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217
C C C H F +C+ + CP+C
Sbjct: 24 RCSRCTNILREPVCLG------------GCEHIFCSNCVSDCIG-----TGCPVCYTPAW 66
Query: 218 FKE 220
++
Sbjct: 67 IQD 69
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 27.8 bits (61), Expect = 0.18
Identities = 3/35 (8%), Positives = 7/35 (20%)
Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE 220
I + P+ + +E
Sbjct: 15 LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 28.5 bits (63), Expect = 0.19
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 15/65 (23%)
Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-----QVHHQ 208
+ C +C + P + + QC F C+ +++ +
Sbjct: 3 SGSSGCKLCL---------GEYPVEQMTTI-AQCQCIFCTLCLKQYVELLIKEGLETAIS 52
Query: 209 CPMCR 213
CP
Sbjct: 53 CPDAA 57
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 26.9 bits (59), Expect = 0.57
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
N+ T +C S ++ G D FH C+ + + CP CR
Sbjct: 14 NEPTYCLCN-----QVSYGEMIGCDNEQC---PIEWFHFSCVSLTYKPKGKWY-CPKCRG 64
Query: 215 E 215
+
Sbjct: 65 D 65
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 26.6 bits (58), Expect = 0.72
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 9/52 (17%)
Query: 173 CKLPGDDCPLVWGQCSHC---FHIHCI------MKWLNSQQVHHQCPMCRQE 215
C + ++ + C H+ C+ M C +CR
Sbjct: 21 CGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72
>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B
73 kDa, TFB1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 114
Score = 27.2 bits (60), Expect = 0.85
Identities = 8/63 (12%), Positives = 22/63 (34%)
Query: 17 QINTISNKQQTYPGQAETLAKIKENLQGEESNERKNLKHPPPPSPQAIRVWTLRSPFNKI 76
++TI Q T + + ++ + + + P + + + R+ + I
Sbjct: 40 VLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMFSFNNRTVMDNI 99
Query: 77 LDT 79
T
Sbjct: 100 KMT 102
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 26.6 bits (58), Expect = 0.85
Identities = 7/45 (15%), Positives = 10/45 (22%), Gaps = 2/45 (4%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
C D V + I KWL++
Sbjct: 10 RCPISLELMKDP--VIVSTGQTYERSSIQKWLDAGHKTCPKSQET 52
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 25.7 bits (56), Expect = 1.9
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198
C C+ G +C H C +
Sbjct: 49 TCDKCEEEGTIWSYHCDECDFDLHAKCALN 78
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 24.9 bits (54), Expect = 2.0
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 14/62 (22%)
Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHH-QCPMCR 213
+ + C +C+ E C D C +HIHC+ L CP C
Sbjct: 8 HMEFCRVCKDGGELLCCD-------------TCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
Query: 214 QE 215
Sbjct: 55 CP 56
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM
{Vibrio cholerae [TaxId: 666]}
Length = 80
Score = 24.7 bits (54), Expect = 3.8
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 59 PSPQAIRVWTLRSPFNKILD--TALQRRAYGLENEEIS 94
P + ++VW PF++++ LQ R G+ + I
Sbjct: 23 PRGEMMQVWIQPLPFSQLVSWIAYLQER-QGVSVDAID 59
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 24.9 bits (54), Expect = 4.0
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK 198
V ND+ C +C E ++ P C + C+ FH C+ +
Sbjct: 12 VVNDEMCDVC----EVWTAESLFP---CRV----CTRVFHDGCLRR 46
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 24.8 bits (53), Expect = 4.6
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 170 CSDCKLPGDDCPLVWGQCSHC---FHIHCIMKWLNSQQV-----HHQCPMCRQEWK 217
C C+ +C C +H C + ++V C C ++ K
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 24.6 bits (53), Expect = 4.8
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 170 CSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHH 207
C +C G + C C H+ C + H
Sbjct: 21 CEECLKIGSPWVHLR-ICRTCGHVGCCDDSPHKHATRH 57
>d2q79a1 d.58.8.1 (A:284-362) Papillomavirus-1 E2 protein {Human
papillomavirus type 16 [TaxId: 333760]}
Length = 79
Score = 23.8 bits (52), Expect = 7.4
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 149 TWRWVANDDTCGICRI 164
TW W ++ +
Sbjct: 33 TWHWTGHNVKHKSAIV 48
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689
{Leishmania major [TaxId: 5664]}
Length = 182
Score = 24.9 bits (54), Expect = 8.0
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 42 LQGEESNERKNLKHPPPPSP 61
+ E E P P+P
Sbjct: 10 TRRELEEEMGRSDKPEQPTP 29
>d1a7ge_ d.58.8.1 (E:) Papillomavirus-1 E2 protein {Human
papillomavirus type 31 [TaxId: 10585]}
Length = 82
Score = 23.8 bits (52), Expect = 8.6
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 149 TWRWVANDDTCGICRI 164
TW W D +
Sbjct: 35 TWHWTCTDGKHKNAIV 50
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 23.7 bits (50), Expect = 8.7
Identities = 3/48 (6%), Positives = 7/48 (14%), Gaps = 2/48 (4%)
Query: 169 CCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
C + + I + L +
Sbjct: 9 CGKISFELMREP--CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 54
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA
probable tRNA-binding arm {Staphylococcus aureus
[TaxId: 1280]}
Length = 65
Score = 23.1 bits (50), Expect = 9.0
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 16 KQINTISNKQQTYPGQAETLAKIKENLQGEESNERK 51
K +N + P + K Q ++NE+K
Sbjct: 17 KDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQK 52
>d1koza_ g.3.6.2 (A:) Grammotoxin SIA, GrTx {Tarantula (Grammostola
spatulata) [TaxId: 432528]}
Length = 36
Score = 22.4 bits (47), Expect = 9.3
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 179 DCPLVWGQCSH----CFHIHCIMKW 199
DC WG+CS C H+ C KW
Sbjct: 1 DCVRFWGKCSQTSDCCPHLACKSKW 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.432
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 862,048
Number of extensions: 40179
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 56
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)