Query psy14832
Match_columns 213
No_of_seqs 127 out of 206
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 21:57:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10261 Scs3p: Inositol phosp 100.0 3.6E-42 7.8E-47 300.3 11.5 121 87-207 2-156 (238)
2 KOG3750|consensus 100.0 8.5E-40 1.8E-44 288.2 7.6 177 36-212 1-181 (270)
3 PHA02580 8 baseplate wedge sub 53.4 4.2 9.1E-05 37.4 -0.1 32 155-186 132-165 (331)
4 TIGR02586 cas_devS CRISPR-asso 48.8 16 0.00034 31.7 2.6 23 29-51 18-40 (188)
5 PF07589 VPEP: PEP-CTERM motif 47.5 19 0.0004 21.2 2.1 14 36-49 1-14 (25)
6 TIGR02595 PEP_exosort PEP-CTER 47.4 24 0.00051 20.9 2.5 15 37-51 1-15 (26)
7 TIGR02593 CRISPR_cas5 CRISPR-a 41.7 34 0.00074 22.0 2.8 24 27-50 16-39 (42)
8 COG1347 NqrD Na+-transporting 40.8 70 0.0015 27.7 5.3 76 39-116 66-150 (208)
9 PHA02706 hypothetical protein; 34.3 29 0.00063 24.2 1.7 34 65-98 8-41 (58)
10 PF09215 Phage-Gp8: Bacterioph 28.1 29 0.00062 32.5 1.1 27 157-183 125-152 (324)
11 PRK09487 sdhC succinate dehydr 27.6 85 0.0018 25.3 3.6 28 86-114 54-82 (129)
12 KOG3787|consensus 26.9 1.4E+02 0.003 29.7 5.4 69 47-116 240-313 (507)
13 COG0786 GltS Na+/glutamate sym 23.0 4.6E+02 0.01 25.4 8.1 129 28-165 206-347 (404)
14 TIGR01895 cas_Cas5t CRISPR-ass 22.1 82 0.0018 27.2 2.7 24 28-51 21-44 (215)
15 PLN00127 succinate dehydrogena 20.7 1.9E+02 0.0041 24.9 4.6 24 35-58 52-82 (178)
No 1
>PF10261 Scs3p: Inositol phospholipid synthesis and fat-storage-inducing TM; InterPro: IPR019388 This entry represents the fat storage-inducing transmembrane (FIT) family of proteins, which play an important role in lipid droplet accumulation. They are endoplasmic reticulum resident membrane proteins that induce lipid droplet accumulation in cell culture and when expressed in mouse liver []; they mediate the partitioning of triglyceride from the ER into cytosolic fatty droplets by an as-yet undetermined mechanism. The FIT family of proteins are not involved in triglyceride biosynthesis []. FIT1 and FIT2 proteins are six-transmembrane-domain containing proteins with both the N and C termini residing in the cytosol. FIT2 is the more anciently conserved homologue of the FIT family; this family of proteins do not share sequence similarity to known proteins or domains.
Probab=100.00 E-value=3.6e-42 Score=300.34 Aligned_cols=121 Identities=45% Similarity=0.821 Sum_probs=105.0
Q ss_pred CCcccccCCChhhHHhhhhhhHHHHHHHHHhhheeeeeeecCchhh--HHHHHHHHHHHHHHHHHHhhhh------hHHh
Q psy14832 87 PKSYFSQSSHFLNQYFVKLGWGWTLICTIPFVVMTSYTYCCSDRKQ--VAFHLLRLGVATFFWMFWTNMF------QYIE 158 (213)
Q Consensus 87 p~~Yfa~k~N~lN~~FVK~gW~WTtl~~~~f~~l~~~~~~~~~~~~--~~r~l~Ry~v~T~~W~~~Tq~F------~~Id 158 (213)
|++||+||+|+|||||||+||+||++++++|++.++....+++++. ..|+++||+++|++|+++|||| ++|+
T Consensus 2 ~~~Yfa~k~N~lN~~FVK~gW~WTt~~~~~~i~~~s~~~~~~~~~~~~~~~~l~Ry~v~T~~W~~~TqWffG~pi~drif 81 (238)
T PF10261_consen 2 PYSYFANKDNILNQYFVKRGWFWTTLVFWPFILLYSSPYSRSNRSRLRVKRALLRYAVATLWWYLFTQWFFGPPIFDRIF 81 (238)
T ss_pred CcceeccCCCchhHHHHHHhHHHHHHHHHHHHHheeccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhhH
Confidence 6899999999999999999999999999999887776555443333 5789999999999999999955 5666
Q ss_pred h-hhccccCCCC-----------------------CChhHHhhcCCCcc-ccccchhHHHHHHHHHHHHHH-hhh
Q psy14832 159 S-IYGRCTEPRF-----------------------SRRSKCLEAGARWS-GFDISGHSFLLIYSVLIMIEE-AKP 207 (213)
Q Consensus 159 ~-tgG~C~~~~~-----------------------~s~~~C~~~Gg~W~-GfDiSGH~FLLi~ssLlL~~E-l~~ 207 (213)
+ |||+|+.++. .++++|+++||+|+ |||||||+|||++|+|+|++| +.+
T Consensus 82 ~~TGG~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~C~~~GG~W~gG~DiSGH~FLL~~~sl~L~~E~l~~ 156 (238)
T PF10261_consen 82 VWTGGKCSFSSFDSAGPVNSLFQDSSQDSLLLSEIISSAACRRAGGSWRGGHDISGHVFLLILSSLFLWEESLSP 156 (238)
T ss_pred hhcCCccCCCCccccccccccccccccccccccccccHHHHhhCcCeeCCCcCCCccchHHHHHHHHHHHHHHHH
Confidence 6 7889986543 69999999999998 999999999999999999999 544
No 2
>KOG3750|consensus
Probab=100.00 E-value=8.5e-40 Score=288.16 Aligned_cols=177 Identities=29% Similarity=0.535 Sum_probs=160.3
Q ss_pred CCCCchhHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHhhhcCCCCCc-ccccCCChhhHHhhhhhhHHHHHHH
Q psy14832 36 PTPAKETLVDELIRVVLGLGNKYLMLEIKYRIATYLGILFAVSIIGDVLPYPKS-YFSQSSHFLNQYFVKLGWGWTLICT 114 (213)
Q Consensus 36 p~~~p~s~~~~~~~~~~~~~~~~~~~~~~~k~~iy~~~l~~gS~i~~~~~~p~~-Yfa~k~N~lN~~FVK~gW~WTtl~~ 114 (213)
++++|.+..+...+..+..+||-.++...+++..+++..+..|.+.++.+.|.. ||.||||.+||||||.||+||..++
T Consensus 1 ~~~~~~~~~~~~~~gvl~~~~~~ill~~~~~~tl~i~a~~~~s~~~~~~~l~~t~Y~~~~~n~~n~~~vk~gw~wT~~~~ 80 (270)
T KOG3750|consen 1 YTAVPASTGEDLRHGVLVLKRKTILLVWAYVVTLLIGAGVVISDLVFVYPLPHTHYLVNKDNVLNQYFVKIGWTWTSLAL 80 (270)
T ss_pred CCCcccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhheeeEEEeecCceEEEeecccchheecccceehhhHHHH
Confidence 578999999999999999999999999999999988887777888888898865 9999999999999999999999999
Q ss_pred HHhhheeeeeeecCchhhHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccC--CCCCChhHHhhcCCCcc-ccccchhH
Q psy14832 115 IPFVVMTSYTYCCSDRKQVAFHLLRLGVATFFWMFWTNMFQYIESIYGRCTE--PRFSRRSKCLEAGARWS-GFDISGHS 191 (213)
Q Consensus 115 ~~f~~l~~~~~~~~~~~~~~r~l~Ry~v~T~~W~~~Tq~F~~Id~tgG~C~~--~~~~s~~~C~~~Gg~W~-GfDiSGH~ 191 (213)
++|..++.+..++++.+...++..+++++|+.||+.+|+|+.++..+|.|.. .+..++++|+++||.|. |||||||+
T Consensus 81 ~~f~~~~~~~~~~~~~~~~~~~~~~~~i~ta~wf~~~~~f~~V~a~tg~~~~s~~~~~T~aqC~~~gG~W~gGfDiSGH~ 160 (270)
T KOG3750|consen 81 LPFINLSTLHKNRGKHIQQLRWACSLVIGTALWFIQPKFFDNVFASTGGCCKSQGPTTTAAQCRREGGHWAGGFDISGHV 160 (270)
T ss_pred HHHHHHHhhhcchhhhhhheeehhHHHHHHHHHHHccchhhhHHhhhcccccCCCccccHHHHhhcCCeecCCcCCccee
Confidence 9999999988777777777777788999999999999999999996555543 57889999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhhhhcccC
Q psy14832 192 FLLIYSVLIMIEEAKPIQGWL 212 (213)
Q Consensus 192 FLLi~ssLlL~~El~~~~~w~ 212 (213)
|||++|||+|+||++++..|+
T Consensus 161 Fllt~ssl~l~eE~~vf~r~~ 181 (270)
T KOG3750|consen 161 FLLTHSSLFLLEEARVFIRYA 181 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 3
>PHA02580 8 baseplate wedge subunit; Provisional
Probab=53.45 E-value=4.2 Score=37.42 Aligned_cols=32 Identities=16% Similarity=0.667 Sum_probs=26.0
Q ss_pred hHHhh-hhccccCCCCCChhHHhhcCCCcc-ccc
Q psy14832 155 QYIES-IYGRCTEPRFSRRSKCLEAGARWS-GFD 186 (213)
Q Consensus 155 ~~Id~-tgG~C~~~~~~s~~~C~~~Gg~W~-GfD 186 (213)
.-+|. -.|+|+...+..+.+|.+.||+|+ -|+
T Consensus 132 RcvDvP~~G~CSI~si~~K~eC~~iGGkWtp~~~ 165 (331)
T PHA02580 132 RCVDVPDTGSCSISSITNKVECIKLGGKWTPTHE 165 (331)
T ss_pred EEeccCCCceeeeeeccCccceeeeCCEECCCcc
Confidence 34555 559999999999999999999997 444
No 4
>TIGR02586 cas_devS CRISPR-associated protein DevS. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.
Probab=48.83 E-value=16 Score=31.75 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=18.3
Q ss_pred cCCCCCCCCCCchhHHHHHHHHH
Q psy14832 29 SKTKGTKPTPAKETLVDELIRVV 51 (213)
Q Consensus 29 ~~~~gt~p~~~p~s~~~~~~~~~ 51 (213)
-+.+-|.|+|+|+|+...+..++
T Consensus 18 ~~~~eTyPLPPpSTV~Gmlhsl~ 40 (188)
T TIGR02586 18 RELQDSEPLPPPATCIGALLSLC 40 (188)
T ss_pred ccceeccCCCChHHHHHHHHHHh
Confidence 56788999999999987665444
No 5
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=47.49 E-value=19 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=9.9
Q ss_pred CCCCchhHHHHHHH
Q psy14832 36 PTPAKETLVDELIR 49 (213)
Q Consensus 36 p~~~p~s~~~~~~~ 49 (213)
|+|||+|+......
T Consensus 1 ~VPEPst~~l~~~g 14 (25)
T PF07589_consen 1 PVPEPSTLALLGLG 14 (25)
T ss_pred CCCCcHHHHHHHHH
Confidence 68999996655443
No 6
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=47.45 E-value=24 Score=20.88 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=11.3
Q ss_pred CCCchhHHHHHHHHH
Q psy14832 37 TPAKETLVDELIRVV 51 (213)
Q Consensus 37 ~~~p~s~~~~~~~~~ 51 (213)
+|||+|+..++..+.
T Consensus 1 VPEPstl~ll~~g~~ 15 (26)
T TIGR02595 1 VPEPSTLLLLLLGLG 15 (26)
T ss_pred CCCchHHHHHHHHHH
Confidence 589999888766553
No 7
>TIGR02593 CRISPR_cas5 CRISPR-associated protein Cas5, N-terminal domain. This model represents a shared N-terminal domain, about 43 amino acids in length, common to a number of related protein families each of which is associated with a distinct subtype of CRISPR/cas system, where CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeat and Cas is an abbreviation for CRISPR-associated. Members of this family are widely distributed enough that we designated the family Cas5. Homology appears remote, or absent, between the more C-terminal regions different subfamilies of these proteins, which typically are 210 to 265 amino acids in total length. Cas5 proteins of six different CRISPR/cas subtypes so far defined are described by respective full-length models TIGR01868, TIGR01876, TIGR01895, TIGR01874, TIGR02586, and TIGR02592. The best characterized protein in this family is DevS or Myxococcus xanthus, a Cas protein that appears to participate in a species-specific
Probab=41.72 E-value=34 Score=22.00 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=19.3
Q ss_pred cccCCCCCCCCCCchhHHHHHHHH
Q psy14832 27 EQSKTKGTKPTPAKETLVDELIRV 50 (213)
Q Consensus 27 ~~~~~~gt~p~~~p~s~~~~~~~~ 50 (213)
+..+.+-|.|.|+|+++..++.-+
T Consensus 16 ~~~~~~~ty~~Pp~Stv~Gll~a~ 39 (42)
T TIGR02593 16 ETFGERPTYPVPPPSALLGLLGAA 39 (42)
T ss_pred ccCccCccCCCCCHHHHHHHHHHH
Confidence 345688999999999998887643
No 8
>COG1347 NqrD Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]
Probab=40.80 E-value=70 Score=27.74 Aligned_cols=76 Identities=14% Similarity=0.241 Sum_probs=55.6
Q ss_pred CchhHHHHHHHHHHHhhhhhhccchhhHHHHHH----HHHHHHHHhhhcCCCC-CcccccCCChhhHHh----hhhhhHH
Q psy14832 39 AKETLVDELIRVVLGLGNKYLMLEIKYRIATYL----GILFAVSIIGDVLPYP-KSYFSQSSHFLNQYF----VKLGWGW 109 (213)
Q Consensus 39 ~p~s~~~~~~~~~~~~~~~~~~~~~~~k~~iy~----~~l~~gS~i~~~~~~p-~~Yfa~k~N~lN~~F----VK~gW~W 109 (213)
-|.|++-|--+.. ++.-+..+|.-+|+..|- ..+|+|-++.+-+-.. .--||.|.-.+..++ -..|++|
T Consensus 66 iPnSvRiIvQm~I--IaslVivvDQ~LkAy~y~iSKqLSVFVGLIITNCIVMGRaEafAm~~~Pi~sf~DGignGlGYg~ 143 (208)
T COG1347 66 IPNSVRIIVQMAI--IASLVIVVDQFLKAYAYELSKQLSVFVGLIITNCIVMGRAEAFAMKSPPIESFLDGIGNGLGYGW 143 (208)
T ss_pred CchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHhcceeeccHHHHhccCCCcHHHHhhccccccchH
Confidence 4778887777666 667778899999998884 3577777777766544 346788888887766 2568999
Q ss_pred HHHHHHH
Q psy14832 110 TLICTIP 116 (213)
Q Consensus 110 Ttl~~~~ 116 (213)
..+++..
T Consensus 144 ~L~~v~~ 150 (208)
T COG1347 144 MLLVVGF 150 (208)
T ss_pred HHHHHHH
Confidence 8888753
No 9
>PHA02706 hypothetical protein; Provisional
Probab=34.31 E-value=29 Score=24.20 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCcccccCCChh
Q psy14832 65 YRIATYLGILFAVSIIGDVLPYPKSYFSQSSHFL 98 (213)
Q Consensus 65 ~k~~iy~~~l~~gS~i~~~~~~p~~Yfa~k~N~l 98 (213)
+.+++-..++-++|++-+-+-+-..||..|+.-.
T Consensus 8 lviaiimmllgi~siiidtvifinayfvkkr~~~ 41 (58)
T PHA02706 8 LVIAIIMMLLGIASIIIDTVIFINAYFVKKRKCI 41 (58)
T ss_pred HHHHHHHHHHhhHHHhhheeeeeehhhhhhhhhc
Confidence 3444444455566777665544455555554433
No 10
>PF09215 Phage-Gp8: Bacteriophage T4, Gp8; InterPro: IPR015298 Members of this family of viral baseplate structural proteins adopt a structure consisting of a three-layer beta-sandwich with two finger-like loops containing an alpha-helix at the opposite sides of the sandwich. The two peripheral, five-stranded, antiparallel beta-sheets are stacked against the middle, four-stranded, antiparallel beta-sheet. Attachment of this family of proteins to the baseplate during assembly creates a binding site for subsequent attachment of Gp6 []. ; PDB: 1N8B_B 1N80_C 1N7Z_B.
Probab=28.13 E-value=29 Score=32.51 Aligned_cols=27 Identities=19% Similarity=0.708 Sum_probs=20.4
Q ss_pred Hhh-hhccccCCCCCChhHHhhcCCCcc
Q psy14832 157 IES-IYGRCTEPRFSRRSKCLEAGARWS 183 (213)
Q Consensus 157 Id~-tgG~C~~~~~~s~~~C~~~Gg~W~ 183 (213)
+|+ ..|.|+.+.+..+.+|...||.|.
T Consensus 125 ldng~~g~csi~~i~~k~e~~~~Gg~~t 152 (324)
T PF09215_consen 125 LDNGESGGCSISSITNKPECNPLGGKWT 152 (324)
T ss_dssp EE--SSEEESSTT--SHHHHHHTTS-EE
T ss_pred EECCCCCccccccccccccccCCCCcCc
Confidence 444 669999999999999999999996
No 11
>PRK09487 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit; Provisional
Probab=27.62 E-value=85 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=14.0
Q ss_pred CCCcccccCCChhhHHhhhhh-hHHHHHHH
Q psy14832 86 YPKSYFSQSSHFLNQYFVKLG-WGWTLICT 114 (213)
Q Consensus 86 ~p~~Yfa~k~N~lN~~FVK~g-W~WTtl~~ 114 (213)
.|+. |+.-..++...+.|.. |+++.++.
T Consensus 54 ~p~~-f~~~~~~~~~~~~k~~~~~~~~al~ 82 (129)
T PRK09487 54 SPEG-FEQAAAIMDSFFVKFIMWGILTALA 82 (129)
T ss_pred CHHH-HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4443 3333456666666655 45544443
No 12
>KOG3787|consensus
Probab=26.87 E-value=1.4e+02 Score=29.66 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhhhccc----hhhHHHHHHHHHHHHHHhhhcCCCCCccc-ccCCChhhHHhhhhhhHHHHHHHHH
Q psy14832 47 LIRVVLGLGNKYLMLE----IKYRIATYLGILFAVSIIGDVLPYPKSYF-SQSSHFLNQYFVKLGWGWTLICTIP 116 (213)
Q Consensus 47 ~~~~~~~~~~~~~~~~----~~~k~~iy~~~l~~gS~i~~~~~~p~~Yf-a~k~N~lN~~FVK~gW~WTtl~~~~ 116 (213)
++.+..=+|.|++=++ ...+...|...+.+|-+++.++..|--|| -.|+|++- ++-+-..+|-|++...
T Consensus 240 PvGI~fLIagkIlem~Dl~~~~~~Lg~Yv~TVi~GL~iH~~i~lPliYF~~TrkNP~~-f~~Gm~Qal~TA~gTs 313 (507)
T KOG3787|consen 240 PVGILFLIAGKILEMEDLGVTARQLGMYVVTVILGLFIHGFIVLPLIYFVVTRKNPFR-FIAGLLQALATAFGTA 313 (507)
T ss_pred chhHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEEEEccChHH-HHHHHHHHHHHHHhcc
Confidence 4555666888888766 33456789999999999999999998766 58899873 3457778888887653
No 13
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=23.01 E-value=4.6e+02 Score=25.42 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=68.0
Q ss_pred ccCCCCCCCCCCchhHH-HHHHHHHHHhhhhhhc--cchhhHHHHHHHHHHHHHHhhhcCCCCCcccccCCChhhHHh-h
Q psy14832 28 QSKTKGTKPTPAKETLV-DELIRVVLGLGNKYLM--LEIKYRIATYLGILFAVSIIGDVLPYPKSYFSQSSHFLNQYF-V 103 (213)
Q Consensus 28 ~~~~~gt~p~~~p~s~~-~~~~~~~~~~~~~~~~--~~~~~k~~iy~~~l~~gS~i~~~~~~p~~Yfa~k~N~lN~~F-V 103 (213)
.+..+++|+...+.-+. -.+..+.+-+++-+.- =++.+.+-+|...+|.|-++.+....-+-|. =.+|..|++- |
T Consensus 206 ~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~-v~~~~v~~ig~v 284 (404)
T COG0786 206 FEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYR-VFRRAVDVIGNV 284 (404)
T ss_pred hhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcccc-ccHHHHHHHhhh
Confidence 45566777776444322 2233344444443321 2255567789999999999988775433332 3455666655 5
Q ss_pred hhhhHHHHHHHHHhhheeeeeeecCchhhHHHHHHHHHHHHHHHHHHhhh--hhHHhh-------hhcccc
Q psy14832 104 KLGWGWTLICTIPFVVMTSYTYCCSDRKQVAFHLLRLGVATFFWMFWTNM--FQYIES-------IYGRCT 165 (213)
Q Consensus 104 K~gW~WTtl~~~~f~~l~~~~~~~~~~~~~~r~l~Ry~v~T~~W~~~Tq~--F~~Id~-------tgG~C~ 165 (213)
-.+.+=..+....= -... ..-..--+..++++++.|.++.-+ |..+-. .+|+|-
T Consensus 285 sL~lflamALmSlk----LweL----~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G 347 (404)
T COG0786 285 SLSLFLAMALMSLK----LWEL----ADLALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCG 347 (404)
T ss_pred HHHHHHHHHHHHHH----HHHH----HhccccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhccccc
Confidence 44443333332210 0000 000111345678889888888754 333322 579995
No 14
>TIGR01895 cas_Cas5t CRISPR-associated protein Cas5, Tneap subtype. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).
Probab=22.06 E-value=82 Score=27.16 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.0
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHH
Q psy14832 28 QSKTKGTKPTPAKETLVDELIRVV 51 (213)
Q Consensus 28 ~~~~~gt~p~~~p~s~~~~~~~~~ 51 (213)
+.+.+-|.|.|+|++|..++..++
T Consensus 21 ~~~~~~Typ~PP~STV~Gml~a~l 44 (215)
T TIGR01895 21 IYGYQPTYPLPPYSTIIGLLSAAV 44 (215)
T ss_pred ccccccccCCCCHHHHHHHHHHHh
Confidence 356678999999999999887666
No 15
>PLN00127 succinate dehydrogenase (ubiquinone) cytochrome b subunit; Provisional
Probab=20.70 E-value=1.9e+02 Score=24.86 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=15.7
Q ss_pred CCCCCch-------hHHHHHHHHHHHhhhhh
Q psy14832 35 KPTPAKE-------TLVDELIRVVLGLGNKY 58 (213)
Q Consensus 35 ~p~~~p~-------s~~~~~~~~~~~~~~~~ 58 (213)
||+.+-. ++-....++++.|.-++
T Consensus 52 RPlSPHL~~~~~~~tiYk~pltai~SIlHRI 82 (178)
T PLN00127 52 RPLSPDVMDIDGKSTHYKFPVVALSSITNRV 82 (178)
T ss_pred CCCCcccccccCCCcEEeccchhhhhHHHHH
Confidence 7777666 66666777776666443
Done!