Query psy14832
Match_columns 213
No_of_seqs 127 out of 206
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 21:58:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n7z_A Baseplate structural pr 55.2 5.2 0.00018 35.9 2.1 29 155-183 132-161 (334)
2 1iyc_A Scarabaecin; antifungal 31.0 12 0.00039 22.9 0.2 19 169-188 12-30 (36)
3 3arc_I Photosystem II reaction 13.7 1.4E+02 0.0049 18.6 2.6 16 64-79 3-18 (38)
4 2pmr_A Uncharacterized protein 13.0 64 0.0022 23.5 1.0 26 88-113 46-72 (87)
5 2jhp_A VP4 core protein; viral 13.0 58 0.002 31.6 0.9 14 184-197 548-561 (644)
6 2oo2_A Hypothetical protein AF 12.1 72 0.0025 23.2 1.0 27 88-114 42-69 (86)
7 2fl8_A Baseplate structural pr 8.2 1.4E+02 0.0047 29.0 1.7 24 163-186 330-355 (602)
8 1whi_A Ribosomal protein L14; 7.6 2E+02 0.007 22.0 2.1 29 9-37 67-99 (122)
9 3bbo_M Ribosomal protein L14; 6.9 2.4E+02 0.0083 21.6 2.2 29 9-37 67-99 (121)
10 1rh5_C Secbeta; protein transl 6.2 3.1E+02 0.011 18.0 2.2 31 4-39 1-31 (53)
No 1
>1n7z_A Baseplate structural protein GP8; bacteriophage T4, dimer, beta sandwich, viral protein; 2.00A {Enterobacteria phage T4} SCOP: b.127.1.1 PDB: 1n80_A 1n8b_A 1pdm_A 1tja_A
Probab=55.20 E-value=5.2 Score=35.91 Aligned_cols=29 Identities=21% Similarity=0.732 Sum_probs=25.0
Q ss_pred hHHhh-hhccccCCCCCChhHHhhcCCCcc
Q psy14832 155 QYIES-IYGRCTEPRFSRRSKCLEAGARWS 183 (213)
Q Consensus 155 ~~Id~-tgG~C~~~~~~s~~~C~~~Gg~W~ 183 (213)
.-+|. ..|.|+...+..+.+|...||+|+
T Consensus 132 rCldvp~~g~csi~si~~k~ec~~nGg~wt 161 (334)
T 1n7z_A 132 RCLDVPDTGMCSIASLTDKDECLKLGGKWT 161 (334)
T ss_dssp EEEECCSSEEESSTTCCCHHHHHHTTCCEE
T ss_pred EEeccCCccccccccccccchhhhcCcccC
Confidence 44555 569999999999999999999996
No 2
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=30.95 E-value=12 Score=22.89 Aligned_cols=19 Identities=42% Similarity=0.941 Sum_probs=13.5
Q ss_pred CCChhHHhhcCCCccccccc
Q psy14832 169 FSRRSKCLEAGARWSGFDIS 188 (213)
Q Consensus 169 ~~s~~~C~~~Gg~W~GfDiS 188 (213)
+.+++.|- +|..|+|||--
T Consensus 12 irsrsncp-kgkvwngfdck 30 (36)
T 1iyc_A 12 IRSRSNCP-KGKVWNGFDCK 30 (36)
T ss_dssp CTTTSCCC-SSCEEETTEEE
T ss_pred EeeccCCC-CcceecCcccc
Confidence 45666674 57789999953
No 3
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=13.68 E-value=1.4e+02 Score=18.60 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHH
Q psy14832 64 KYRIATYLGILFAVSI 79 (213)
Q Consensus 64 ~~k~~iy~~~l~~gS~ 79 (213)
.+|+.+|..++|+.|+
T Consensus 3 tLKi~Vy~vV~ffvsL 18 (38)
T 3arc_I 3 TLKITVYIVVTFFVLL 18 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eEEeeehhHHHHHHHH
Confidence 3688888888877764
No 4
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=13.05 E-value=64 Score=23.45 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=21.8
Q ss_pred CcccccCCChhhHHh-hhhhhHHHHHH
Q psy14832 88 KSYFSQSSHFLNQYF-VKLGWGWTLIC 113 (213)
Q Consensus 88 ~~Yfa~k~N~lN~~F-VK~gW~WTtl~ 113 (213)
.-||..|+..+|.+- +-+||||.=++
T Consensus 46 a~~fl~kGD~v~Ala~isYa~GwLDAl 72 (87)
T 2pmr_A 46 SVYYLEKGDHITSFGCITYAHGLLDSL 72 (87)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 357888899999977 89999998773
No 5
>2jhp_A VP4 core protein; viral protein, viral capping enzyme, virion PR viral protein; HET: SAH GUN; 2.5A {Bluetongue virus 10} PDB: 2jh8_A* 2jha_A* 2jhc_A* 2jh9_A*
Probab=13.03 E-value=58 Score=31.56 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=9.7
Q ss_pred ccccchhHHHHHHH
Q psy14832 184 GFDISGHSFLLIYS 197 (213)
Q Consensus 184 GfDiSGH~FLLi~s 197 (213)
|.|+|||-|+-..+
T Consensus 548 glD~SGHL~i~L~S 561 (644)
T 2jhp_A 548 GLDLSGHLYVTLMS 561 (644)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CcCccCcEEEEEec
Confidence 99999999975554
No 6
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=12.07 E-value=72 Score=23.19 Aligned_cols=27 Identities=22% Similarity=0.585 Sum_probs=22.3
Q ss_pred CcccccCCChhhHHh-hhhhhHHHHHHH
Q psy14832 88 KSYFSQSSHFLNQYF-VKLGWGWTLICT 114 (213)
Q Consensus 88 ~~Yfa~k~N~lN~~F-VK~gW~WTtl~~ 114 (213)
.-||..|+..+|.+- +-+||+|.=+..
T Consensus 42 a~~fl~kGD~v~Ala~isYa~GwLDAg~ 69 (86)
T 2oo2_A 42 SRYFLEKGDLVRAFECVVWAWAWLEIGL 69 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 357888899999977 899999987744
No 7
>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail, evolution, structur comparisons, virus-viral protein complex; 12.00A {Enterobacteria phage T4} PDB: 2fl9_A
Probab=8.24 E-value=1.4e+02 Score=29.00 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=19.7
Q ss_pred cccCCCCCChhHHhhcCCCcc--ccc
Q psy14832 163 RCTEPRFSRRSKCLEAGARWS--GFD 186 (213)
Q Consensus 163 ~C~~~~~~s~~~C~~~Gg~W~--GfD 186 (213)
.|+..+..++..|...||.|. |-|
T Consensus 330 ~cega~~~~~~~c~~~gG~w~~S~~d 355 (602)
T 2fl8_A 330 HCVGADSDDEVECSVLGGTWEQSHTD 355 (602)
T ss_pred EecCCcCCcHHHHHhcCCeecccCCc
Confidence 577767789999999999995 554
No 8
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=7.57 E-value=2e+02 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=21.3
Q ss_pred CCCcCCCCcccccCCCC----ccccCCCCCCCC
Q psy14832 9 NPIRRDSIKHQNFSSGN----FEQSKTKGTKPT 37 (213)
Q Consensus 9 ~~~~~~~~~~~~~~~~~----~~~~~~~gt~p~ 37 (213)
+++++...+.+.|..|. +++-|++|||=.
T Consensus 67 k~~rR~dG~~i~FddNa~Vlin~~g~p~GTrI~ 99 (122)
T 1whi_A 67 RGVRRPDGSYIRFDENACVIIRDDKSPRGTRIF 99 (122)
T ss_dssp SCEECTTSCEECCSSCEEEEECTTSCBSSSCBC
T ss_pred CceecCCCCEEEeCCceEEEECCCCCEeeeEEE
Confidence 33455567889998765 668899999954
No 9
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=6.87 E-value=2.4e+02 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=20.9
Q ss_pred CCCcCCCCcccccCCCC----ccccCCCCCCCC
Q psy14832 9 NPIRRDSIKHQNFSSGN----FEQSKTKGTKPT 37 (213)
Q Consensus 9 ~~~~~~~~~~~~~~~~~----~~~~~~~gt~p~ 37 (213)
+++++...+.+.|..|. +.+-|.+|||=.
T Consensus 67 k~~rR~dG~~i~FddNa~Vlin~~g~p~GTrI~ 99 (121)
T 3bbo_M 67 KELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIF 99 (121)
T ss_dssp SCEECTTSCEECCSSCEEEECCTTSSCSSSCCC
T ss_pred CccccCCCCEEEeCCceEEEECCCCCEeEeEEE
Confidence 34455567888898764 568899999943
No 10
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=6.23 E-value=3.1e+02 Score=18.00 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=5.0
Q ss_pred cCCcCCCCcCCCCcccccCCCCccccCCCCCCCCCC
Q psy14832 4 MAGRRNPIRRDSIKHQNFSSGNFEQSKTKGTKPTPA 39 (213)
Q Consensus 4 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~p~~~ 39 (213)
||.|+.+--.+++.=|.|- .+|..|=|=.|.
T Consensus 1 Mak~~~~~~~ssaGLvryy-----~ee~~giKi~P~ 31 (53)
T 1rh5_C 1 MSKREETGLATSAGLIRYM-----DETFSKIRVKPE 31 (53)
T ss_dssp -------------------------CCCCSCCCCHH
T ss_pred CCCccCCCCcccccchhhh-----hccCCccccCCe
Confidence 5666555333345555554 344445444433
Done!