Query psy14832
Match_columns 213
No_of_seqs 127 out of 206
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 21:58:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14832.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14832hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iyca_ g.31.1.2 (A:) Antifung 31.0 5.4 0.00039 22.9 0.2 19 169-188 12-30 (36)
2 d2axti1 f.23.37.1 (I:1-35) Pho 19.4 41 0.003 19.2 2.6 16 64-79 3-18 (35)
3 d1nekc_ f.21.2.2 (C:) Succinat 13.0 30 0.0022 24.3 1.1 24 32-55 6-29 (129)
4 d2oo2a1 a.8.11.1 (A:1-75) Hypo 11.4 37 0.0027 22.6 1.0 27 88-114 40-67 (75)
5 d2pmra1 a.8.11.1 (A:3-77) Unch 9.5 47 0.0035 22.0 1.0 26 88-113 42-68 (75)
6 d2p92a1 d.64.2.1 (A:1-106) Hyp 8.4 32 0.0023 23.7 -0.3 14 178-191 10-23 (106)
7 d2j01o1 b.39.1.1 (O:1-122) Rib 8.1 87 0.0063 22.1 2.1 29 9-37 67-99 (122)
8 d1ijda_ f.3.1.1 (A:) Light-har 7.2 2.3E+02 0.016 16.8 3.4 28 56-83 5-32 (46)
9 d1g60a_ c.66.1.11 (A:) Methylt 6.8 97 0.0071 22.4 1.9 28 168-195 223-250 (256)
10 d1whia_ b.39.1.1 (A:) Ribosoma 6.5 1.2E+02 0.0086 21.4 2.1 29 10-38 68-100 (122)
No 1
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=30.95 E-value=5.4 Score=22.89 Aligned_cols=19 Identities=42% Similarity=0.941 Sum_probs=13.5
Q ss_pred CCChhHHhhcCCCccccccc
Q psy14832 169 FSRRSKCLEAGARWSGFDIS 188 (213)
Q Consensus 169 ~~s~~~C~~~Gg~W~GfDiS 188 (213)
+.+++.|- +|..|+|||--
T Consensus 12 irsrsncp-kgkvwngfdck 30 (36)
T d1iyca_ 12 IRSRSNCP-KGKVWNGFDCK 30 (36)
T ss_dssp CTTTSCCC-SSCEEETTEEE
T ss_pred EeeccCCC-CcceecCcccc
Confidence 45666674 57789999953
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.41 E-value=41 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHH
Q psy14832 64 KYRIATYLGILFAVSI 79 (213)
Q Consensus 64 ~~k~~iy~~~l~~gS~ 79 (213)
.+|+.+|..+.|+.|+
T Consensus 3 tLKi~Vy~vV~fFv~l 18 (35)
T d2axti1 3 TLKITVYIVVTFFVLL 18 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eEEEehhhHHHHHHHH
Confidence 4788899888887774
No 3
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=12.99 E-value=30 Score=24.33 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=10.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhh
Q psy14832 32 KGTKPTPAKETLVDELIRVVLGLG 55 (213)
Q Consensus 32 ~gt~p~~~p~s~~~~~~~~~~~~~ 55 (213)
|..||+.+=.++-....++++.+.
T Consensus 6 ~~~RP~sPhL~iyk~~~t~~~SI~ 29 (129)
T d1nekc_ 6 KKQRPVNLDLQTIRFPITAIASIL 29 (129)
T ss_dssp CCCCCBCCCGGGSCCCHHHHHHHH
T ss_pred ccCCCCCCCcceeCchHHHHHHHH
Confidence 344555444443333344443333
No 4
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.41 E-value=37 Score=22.56 Aligned_cols=27 Identities=22% Similarity=0.585 Sum_probs=22.2
Q ss_pred CcccccCCChhhHHh-hhhhhHHHHHHH
Q psy14832 88 KSYFSQSSHFLNQYF-VKLGWGWTLICT 114 (213)
Q Consensus 88 ~~Yfa~k~N~lN~~F-VK~gW~WTtl~~ 114 (213)
.-||.+|+...|.+- +.+|++|.=+-.
T Consensus 40 a~~fl~~gD~v~A~~~~~Ya~gwlDag~ 67 (75)
T d2oo2a1 40 SRYFLEKGDLVRAFECVVWAWAWLEIGL 67 (75)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 357888999999987 899999986654
No 5
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.48 E-value=47 Score=21.97 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=22.1
Q ss_pred CcccccCCChhhHHh-hhhhhHHHHHH
Q psy14832 88 KSYFSQSSHFLNQYF-VKLGWGWTLIC 113 (213)
Q Consensus 88 ~~Yfa~k~N~lN~~F-VK~gW~WTtl~ 113 (213)
.-||.+|....|.+- +.+++||.=+.
T Consensus 42 a~~f~~~gd~v~A~~~i~YA~g~lDAl 68 (75)
T d2pmra1 42 SVYYLEKGDHITSFGCITYAHGLLDSL 68 (75)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHHHHHHHHH
Confidence 468889999999987 89999998664
No 6
>d2p92a1 d.64.2.1 (A:1-106) Hypothetical protein SAV1646 {Staphylococcus aureus [TaxId: 1280]}
Probab=8.39 E-value=32 Score=23.71 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=9.5
Q ss_pred cCCCccccccchhH
Q psy14832 178 AGARWSGFDISGHS 191 (213)
Q Consensus 178 ~Gg~W~GfDiSGH~ 191 (213)
..|...||.++||.
T Consensus 10 ~~g~i~~~~v~GHA 23 (106)
T d2p92a1 10 DEGKVTDVIMDGHA 23 (106)
T ss_dssp TTSCEEEEEEEC--
T ss_pred CCCCEEEEEEEecC
Confidence 45667899999996
No 7
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}
Probab=8.13 E-value=87 Score=22.13 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCCcCCCCcccccCCCC----ccccCCCCCCCC
Q psy14832 9 NPIRRDSIKHQNFSSGN----FEQSKTKGTKPT 37 (213)
Q Consensus 9 ~~~~~~~~~~~~~~~~~----~~~~~~~gt~p~ 37 (213)
++.++...+.+.|.-|. +.+.+++|||=.
T Consensus 67 k~~~r~dG~~i~F~~Na~VLl~~~~~p~GTrI~ 99 (122)
T d2j01o1 67 KEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVF 99 (122)
T ss_dssp SCEECTTSCEEECSSCEEEEECTTSCCSSSCCC
T ss_pred cceEcCCCCEEEcCCCEEEEECCCCCEeeeEEe
Confidence 34455577888998865 567899999954
No 8
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=7.24 E-value=2.3e+02 Score=16.82 Aligned_cols=28 Identities=7% Similarity=0.234 Sum_probs=22.0
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHhhhc
Q psy14832 56 NKYLMLEIKYRIATYLGILFAVSIIGDV 83 (213)
Q Consensus 56 ~~~~~~~~~~k~~iy~~~l~~gS~i~~~ 83 (213)
|.-..++|..-+-++++.+.++|++--+
T Consensus 5 kiW~VV~PtvG~Pl~LgsVav~s~~VH~ 32 (46)
T d1ijda_ 5 KIWTVVPPAFGLPLMLGAVAITALLVHA 32 (46)
T ss_dssp GGGGTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcCchhHHHHHHHHHHHHHH
Confidence 4446789999999999999998876543
No 9
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=6.78 E-value=97 Score=22.39 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=24.4
Q ss_pred CCCChhHHhhcCCCccccccchhHHHHH
Q psy14832 168 RFSRRSKCLEAGARWSGFDISGHSFLLI 195 (213)
Q Consensus 168 ~~~s~~~C~~~Gg~W~GfDiSGH~FLLi 195 (213)
..++..+|.+.|-.|-|+|++=++|-++
T Consensus 223 SGTT~~aa~~~~R~~ig~El~~~y~~~a 250 (256)
T d1g60a_ 223 SGTTAIVAKKLGRNFIGCDMNAEYVNQA 250 (256)
T ss_dssp TCHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred chHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 4567899999999999999999998765
No 10
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.48 E-value=1.2e+02 Score=21.40 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=21.0
Q ss_pred CCcCCCCcccccCCCC----ccccCCCCCCCCC
Q psy14832 10 PIRRDSIKHQNFSSGN----FEQSKTKGTKPTP 38 (213)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~~~~~~gt~p~~ 38 (213)
+.++...+.+.|.-|. +++.++.|||=.-
T Consensus 68 ~~~R~dG~~i~F~~Na~VLl~~~~~P~GTrI~G 100 (122)
T d1whia_ 68 GVRRPDGSYIRFDENACVIIRDDKSPRGTRIFG 100 (122)
T ss_dssp CEECTTSCEECCSSCEEEEECTTSCBSSSCBCS
T ss_pred eeeccCCceEEeCCCEEEEECCCCCEeeeeEec
Confidence 3444567888888765 5689999999653
Done!