RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14832
(213 letters)
>gnl|CDD|220660 pfam10261, Scs3p, Inositol phospholipid synthesis and
fat-storage-inducing TM. This is a family of
transmembrane proteins which are variously annotated as
possibly being inositol phospholipid synthesis protein
and fat-storage-inducing. The members are conserved from
yeasts to humans and are localised to the endoplasmic
reticulum where they are involved in triglyceride lipid
droplet formation.
Length = 223
Score = 121 bits (305), Expect = 3e-34
Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 85 PYPKSYFSQSSHFLNQYFVKLGWGWTLICTIPFVVMTSYTYCCSDR--KQVAFHLLRLGV 142
P P SYF+ + LNQYFVK GW WT + F+++ S + S+R ++ HL R V
Sbjct: 1 PRPYSYFANKDNVLNQYFVKRGWFWTTLFYGLFLLLYSASLTRSNRFSLRIIQHLSRYVV 60
Query: 143 ATFFWMFWTNMFQ------YIESIYG-RCTEPRFS--------RRSKCLEAGARW-SGFD 186
AT +W +T F I + G C+E F + C AG W GFD
Sbjct: 61 ATLWWYLFTQWFFGPPIFDRIFVLTGGSCSESLFDTAGPKELISSAACRRAGGLWIGGFD 120
Query: 187 ISGHSFLLIYSVLIMIEEAKPIQGWL 212
ISGH FLL+ S L++ EE +
Sbjct: 121 ISGHVFLLVLSSLLLWEELGQVARVF 146
>gnl|CDD|109875 pfam00837, T4_deiodinase, Iodothyronine deiodinase. Iodothyronine
deiodinase converts thyroxine (T4) to
3,5,3'-triiodothyronine (T3).
Length = 237
Score = 30.9 bits (70), Expect = 0.35
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 161 YGRCTEPRFSRRSKCLEAGARWSGFDISGHSFLLIYSVLIMIEEAKPIQGWL 212
+G CT P F R L+A R S FL+IY IEEA P GW
Sbjct: 109 FGSCTUPPFMAR---LDAFQRLVEDFCSTADFLIIY-----IEEAHPSDGWA 152
>gnl|CDD|226294 COG3771, COG3771, Predicted membrane protein [Function unknown].
Length = 97
Score = 28.6 bits (64), Expect = 0.86
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 47 LIRVVLGLGNK------YLMLEIKYRIATYLGILFAVSII 80
LI V LG N YL+ + ++R++T L LFA
Sbjct: 15 LIAVTLGAQNDQQVTFNYLLAQGEFRLSTLLATLFAAGFA 54
>gnl|CDD|217481 pfam03303, WTF, WTF protein. This is a family of hypothetical
Schizosaccharomyces pombe proteins. Their function is
unknown.
Length = 240
Score = 29.5 bits (66), Expect = 1.2
Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 25/135 (18%)
Query: 83 VLPYPKSYFSQSSHFLNQYFVKLGWGWTLICTIPFVVMTSYTYCCSDRKQVAFHLLRLGV 142
LPY ++F F G W LICTI + +T + + +V G+
Sbjct: 101 YLPYKDAFFKNYGFAEWVLF---GL-WCLICTIALIFLTYFYETWTKAVKVTVIACGAGL 156
Query: 143 ATF-------FWMFWT----NMFQYIESIYGRCTEPRFSRRSKCLEAGARWSGFDISGHS 191
F W+ W +F + + C IS H
Sbjct: 157 RNFRKKWGVIIWLLWAIICLILFGAFKDGRLNLNKAHICSWLTC----------SISAHL 206
Query: 192 FLLIYSVLIMIEEAK 206
L + SV I I +
Sbjct: 207 ILAVLSVAIPIWTIE 221
>gnl|CDD|219955 pfam08657, DASH_Spc34, DASH complex subunit Spc34. The DASH
complex is a ~10 subunit microtubule-binding complex
that is transferred to the kinetochore prior to mitosis.
In Saccharomyces cerevisiae DASH forms both rings and
spiral structures on microtubules in vitro. Components
of the DASH complex, including Dam1, Duo1, Spc34, Dad1
and Ask1, are essential and connect the centromere to
the plus end of spindle microtubules.
Length = 255
Score = 29.4 bits (66), Expect = 1.2
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 44 VDELIRVVLGLGNKYLMLEIKYRIATYL 71
V+ L+R L + Y + + +I T
Sbjct: 158 VEVLLRGAEELCDVYPLPGAREKIETLR 185
>gnl|CDD|110567 pfam01570, Flavi_propep, Flavivirus polyprotein propeptide. The
flaviviruses are small enveloped animal viruses
containing a single positive strand genomic RNA. The
genome encodes one large ORF a polyprotein which
undergos proteolytic processing into mature viral
peptide chains. This family consists of a propeptide
region of approximately 90 amino acid length.
Length = 87
Score = 26.6 bits (59), Expect = 3.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 161 YGRCTEPRFSRRSK 174
YGRCT+ SRRS+
Sbjct: 74 YGRCTQTGESRRSR 87
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 27.9 bits (62), Expect = 5.4
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 111 LICTIPFVVMTSYTYCCSDRKQVAFHLLRLGVATFFWMFWTNMFQYIESIY 161
++C IP+V++ + Y VAF A FFW ++ + F ++ Y
Sbjct: 1296 VVCEIPYVLIQTTYYTLIVYAMVAFEWT---AAKFFWFYFISFFSFLYFTY 1343
>gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed.
Length = 323
Score = 27.1 bits (60), Expect = 6.8
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 4 MAGRRNPIRRDSIKHQNFSSGNFEQSKTKGTKPTPAKETLVDELIRVVLGLGNKYLMLEI 63
+ G +PI + KH FS+G G + PA LV + G +
Sbjct: 25 LIGSGHPILYAAAKHL-FSAG--------GKRIRPAIVLLVAKAT------GGNMEIKTS 69
Query: 64 KYRIATYLGILFAVSIIGD 82
+ R+A I+ S++ D
Sbjct: 70 QQRLAEITEIIHTASLVHD 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.449
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,964,187
Number of extensions: 1006882
Number of successful extensions: 1108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1104
Number of HSP's successfully gapped: 29
Length of query: 213
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 120
Effective length of database: 6,812,680
Effective search space: 817521600
Effective search space used: 817521600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.8 bits)