RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14832
         (213 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 2.8
 Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 59/167 (35%)

Query: 66   RIATYLGILFAVSIIGDVLPYPKS---YFS-QSSHFLNQYFVKLGW-----GWTLICTIP 116
            R   +    +  SI+  V+  P +   +F  +    + + +  + +     G      I 
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707

Query: 117  FVV---MTSYTYCCSDRK-------QVAFHLLRLGVATFFWMFWTNMFQYIESIYGRCTE 166
              +    TSYT+             Q A  L  +  A          F+ ++S       
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPA--LTLMEKA---------AFEDLKS------- 1749

Query: 167  PRFSRRSKCLEAGARWSGFDISGHSFLLI--YSVL-----IM-IEEA 205
             +    +    A          GHS   +  Y+ L     +M IE  
Sbjct: 1750 -KGLIPADATFA----------GHS---LGEYAALASLADVMSIESL 1782



 Score = 26.6 bits (58), Expect = 7.8
 Identities = 36/249 (14%), Positives = 67/249 (26%), Gaps = 86/249 (34%)

Query: 1   MSMMAGRRNPIRRDSIKHQNF------SSGNF---EQSKTKGTK--PTPAKETLVDELIR 49
           M   + R  P+   ++ H +        + +F    Q + +  K  P P +    D+   
Sbjct: 1   MDAYSTR--PL---TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT 55

Query: 50  VVLGLGNKYLMLEIKYRIATYLGILFAVSIIGDVLPYPKSYFSQS-----SHFLNQYFVK 104
               L            +  +LG  +   +   V P     F Q      + F N Y   
Sbjct: 56  TPAEL------------VGKFLG--Y---VSSLVEPSKVGQFDQVLNLCLTEFENCY--- 95

Query: 105 LGWGW---TLICTIP----------FVVMTSYTY---CCSDRKQVAFH---LLRL---GV 142
           L  G     L   +             ++ +Y       + R         L R    G 
Sbjct: 96  LE-GNDIHALAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGN 153

Query: 143 ATFFWMF---------WTNMFQYIESIYGRCTEPRFSRRSKCLEAGARWS---------G 184
           A    +F         +  + + +   Y           ++ L    R +         G
Sbjct: 154 AQLVAIFGGQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212

Query: 185 FDISGHSFL 193
            +I    +L
Sbjct: 213 LNI--LEWL 219


>3c5x_C PRM; beta barrel, helicase, hydrolase, NUC binding, RNA
           replication, transmembrane, viral protein; HET: NAG NDG
           SHD BMA; 2.20A {Dengue virus 2} PDB: 3c6e_C* 3c6d_D
           3ixy_D 3iya_D 3c6r_D
          Length = 130

 Score = 26.1 bits (57), Expect = 5.1
 Identities = 5/14 (35%), Positives = 5/14 (35%)

Query: 161 YGRCTEPRFSRRSK 174
           YG CT        K
Sbjct: 77  YGTCTTMGEHSTEK 90


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.140    0.449 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,311,857
Number of extensions: 182248
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 8
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.4 bits)