RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14832
         (213 letters)



>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 257

 Score = 25.6 bits (55), Expect = 4.9
 Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 12/160 (7%)

Query: 26  FEQSKTKGTKPTPAKETLVDELIRVVLGLGNKYLMLE---IKYRIATYLGILFAVSIIGD 82
            + S   G++  P KE  V+ L   +    N +   +                 V +  D
Sbjct: 65  LQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLD 124

Query: 83  VLPYPKSYFSQSSHFLNQYFVKLGWGWTLICTIPFVVMTSYTYCCSDRKQVAFHLLRLGV 142
            + +PK     +  F  + +       +   +   VV        S    +   +     
Sbjct: 125 AVFFPKCV-DDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRI----- 178

Query: 143 ATFFWMFWTNMFQYIESIYGRCTEPRFSRRSKCLEAGARW 182
                   +    Y     G   +       +  E   ++
Sbjct: 179 ---AQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQY 215


>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 309

 Score = 25.2 bits (55), Expect = 6.2
 Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 8/37 (21%)

Query: 126 CCSDRKQVAFHLLRL------GVATFFWMFWTNMFQY 156
             + +  + F    +      G         T+ F+Y
Sbjct: 105 IRAKQMGLCFEFASILDEKLKGAVVSVDE--THGFRY 139


>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 75

 Score = 23.9 bits (52), Expect = 6.7
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 62  EIKYRIATYLGI----LFAVSIIGDVLPYPKSYFSQSSHFLNQ-----YFVKLGWGWTLI 112
           E++     +L      +  +      +   ++Y S S +FL +      F  + W W  +
Sbjct: 4   ELRRETLKWLERIEERVKEIEGDEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWL 63


>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon
           Methanosarcina thermophila [TaxId: 2210]}
          Length = 210

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 13/119 (10%), Positives = 27/119 (22%), Gaps = 2/119 (1%)

Query: 77  VSIIGDVLPYPKSYFSQSSHFLNQYFVKLGWGWTLICTIPFVVMTSYTYCCSDRKQVAFH 136
            S+IG+V        S  +   +   + +  G         V+    T            
Sbjct: 35  ASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNI 94

Query: 137 LLRLGV--ATFFWMFWTNMFQYIESIYGRCTEPRFSRRSKCLEAGARWSGFDISGHSFL 193
           +   G   A +     +   Q          +  F      +      +   +   S  
Sbjct: 95  VEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA 153


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.449 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 833,626
Number of extensions: 37447
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 6
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)