Query psy14833
Match_columns 63
No_of_seqs 101 out of 201
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 21:59:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ae2_A Procollagen III, collag 97.1 0.00031 1.1E-08 48.0 3.0 44 1-44 158-204 (256)
2 1t2y_A Metallothionein, MT; pr 42.5 12 0.0004 17.6 1.3 14 39-52 8-21 (26)
3 1ug1_A KIAA1010 protein; struc 20.9 75 0.0026 18.7 2.5 16 14-29 51-66 (92)
4 1f53_A Yeast killer toxin-like 18.6 19 0.00065 21.1 -0.5 19 19-37 38-58 (84)
5 1srz_A Gamma-aminobutyric acid 14.4 1.2E+02 0.0039 15.5 2.1 11 2-12 36-46 (68)
6 2eqf_A Tumor necrosis factor, 11.7 44 0.0015 17.4 -0.2 9 28-36 36-44 (46)
7 2cqw_A Sushi domain containing 10.1 1.3E+02 0.0046 17.4 1.5 15 47-61 22-36 (84)
8 2x12_A FAP1, fimbriae-associat 9.8 1.3E+02 0.0046 20.8 1.7 15 24-38 157-171 (348)
9 1oc0_B Vitronectin; hydrolase/ 9.5 1.6E+02 0.0055 15.3 1.6 10 40-51 17-26 (51)
10 1gh9_A 8.3 kDa protein (gene M 9.4 82 0.0028 17.5 0.4 9 37-45 19-27 (71)
No 1
>4ae2_A Procollagen III, collagen alpha-1(III) chain; structural protein, fibrillar collagen, extracellular matrix fibrosis; 1.68A {Homo sapiens} PDB: 4aej_A* 4ak3_A
Probab=97.10 E-value=0.00031 Score=47.98 Aligned_cols=44 Identities=14% Similarity=-0.102 Sum_probs=34.6
Q ss_pred CceecccccCCCCC---CCceEeeecCCCCeEEecCCCCCCCCeecC
Q psy14833 1 MRDTCSESYPVEND---FHPFAWWVSRNNHKMDYWGGSVFGTRKCEC 44 (63)
Q Consensus 1 iry~C~~s~~~~~~---~~~~~wW~~r~g~~~~yWgGa~~~~~~C~C 44 (63)
|+|.|++|+++... ....+||..+.++.+.+|+|+.+...+|.+
T Consensus 158 ItY~C~~S~~~~d~~~~~~~~a~~~~g~N~~~~~~~g~~~~~~~v~~ 204 (256)
T 4ae2_A 158 ITYHCKNSIAYMDQASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLE 204 (256)
T ss_dssp EEEEEESCCSSCBTTTTBCTTCCEEECSSSCEEBSSSCTTSBCEEEE
T ss_pred EEEEeCCCcccccCCCCCccccEEEEecCCCEEecCCCCccCccEEe
Confidence 68999999985422 134578889999999999999888777654
No 2
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=42.55 E-value=12 Score=17.61 Aligned_cols=14 Identities=29% Similarity=0.862 Sum_probs=9.7
Q ss_pred CCeecCCCCCCccC
Q psy14833 39 TRKCECGILGTCID 52 (63)
Q Consensus 39 ~~~C~CG~~~~C~~ 52 (63)
++.|+||.+=+|+.
T Consensus 8 tgtC~Cg~~CsC~g 21 (26)
T 1t2y_A 8 ASSCNCGSGCSCSN 21 (26)
T ss_dssp TTTCCCSSSCCSST
T ss_pred CccccCCCCccccC
Confidence 56688887766654
No 3
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.94 E-value=75 Score=18.75 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=11.2
Q ss_pred CCCceEeeecCCCCeE
Q psy14833 14 DFHPFAWWVSRNNHKM 29 (63)
Q Consensus 14 ~~~~~~wW~~r~g~~~ 29 (63)
.|.+--|||++.|..-
T Consensus 51 ~Gn~srW~Vdtgg~~G 66 (92)
T 1ug1_A 51 MGSQNRWLIDNGVTKG 66 (92)
T ss_dssp TSCSSEEEEECSSSEE
T ss_pred CCCCcceEEECCCcEE
Confidence 3457799999955443
No 4
>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} SCOP: b.11.1.4
Probab=18.58 E-value=19 Score=21.10 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=11.7
Q ss_pred EeeecC--CCCeEEecCCCCC
Q psy14833 19 AWWVSR--NNHKMDYWGGSVF 37 (63)
Q Consensus 19 ~wW~~r--~g~~~~yWgGa~~ 37 (63)
.|||+| .|+-..-|-+|..
T Consensus 38 ~wWVdkIsTGNN~v~yydang 58 (84)
T 1f53_A 38 GWWVDKISTGNNDLIYYDANG 58 (84)
T ss_dssp SCCEEEEECTTSCCEEEETTT
T ss_pred CEEEEEEecCCceEEEecCCC
Confidence 799997 5555444444443
No 5
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B) receptor, CIS-trans isomerization, CCP module, sushi domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB: 1ss2_A
Probab=14.39 E-value=1.2e+02 Score=15.47 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=5.8
Q ss_pred ceecccccCCC
Q psy14833 2 RDTCSESYPVE 12 (63)
Q Consensus 2 ry~C~~s~~~~ 12 (63)
.|.|...|.+.
T Consensus 36 ~f~C~~Gy~L~ 46 (68)
T 1srz_A 36 EFRCDPDFHLV 46 (68)
T ss_dssp EEEECTTEEEC
T ss_pred EEECCCCCEEe
Confidence 45555555544
No 6
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=11.66 E-value=44 Score=17.40 Aligned_cols=9 Identities=33% Similarity=0.349 Sum_probs=5.6
Q ss_pred eEEecCCCC
Q psy14833 28 KMDYWGGSV 36 (63)
Q Consensus 28 ~~~yWgGa~ 36 (63)
+++||+|..
T Consensus 36 Kq~Y~~g~~ 44 (46)
T 2eqf_A 36 KQMYGSGPS 44 (46)
T ss_dssp HSCSCCCSC
T ss_pred HHhhcCCCC
Confidence 567776543
No 7
>2cqw_A Sushi domain containing 2; somatomedin_B-like domain, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=10.07 E-value=1.3e+02 Score=17.41 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=8.4
Q ss_pred CCCccCCCCceecCC
Q psy14833 47 LGTCIDPTKWCNCDA 61 (63)
Q Consensus 47 ~~~C~~~~~~CNCDa 61 (63)
.+-|......|.||+
T Consensus 22 ~gRCgE~~~~CqCD~ 36 (84)
T 2cqw_A 22 SLRCGAQDGLCSCHP 36 (84)
T ss_dssp SSCSSCBCSSCBCST
T ss_pred hhhccCCCCcCCCCc
Confidence 344444456777765
No 8
>2x12_A FAP1, fimbriae-associated protein FAP1; biofilm, cell WALL, cell adhesion, peptidoglycan-anchor; 2.90A {Streptococcus parasanguinis} PDB: 3rgu_A* 2kub_A
Probab=9.79 E-value=1.3e+02 Score=20.81 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=11.8
Q ss_pred CCCCeEEecCCCCCC
Q psy14833 24 RNNHKMDYWGGSVFG 38 (63)
Q Consensus 24 r~g~~~~yWgGa~~~ 38 (63)
.+|-.++||.|....
T Consensus 157 snggtqyywaggnan 171 (348)
T 2x12_A 157 SNGGTQYYWAGGNAN 171 (348)
T ss_dssp TTSSCEEBBCSSCTT
T ss_pred cCCceEEEecCCCcc
Confidence 588999999876654
No 9
>1oc0_B Vitronectin; hydrolase/inhibitor, serine protease inhibitor/complex, serpin, proteinase inhibitor, fibrinolysis, cell migration; 2.28A {Homo sapiens} SCOP: g.64.1.1 PDB: 1s4g_A 1ssu_A 3bt2_B* 3bt1_B*
Probab=9.54 E-value=1.6e+02 Score=15.25 Aligned_cols=10 Identities=40% Similarity=1.139 Sum_probs=4.9
Q ss_pred CeecCCCCCCcc
Q psy14833 40 RKCECGILGTCI 51 (63)
Q Consensus 40 ~~C~CG~~~~C~ 51 (63)
..|+| +..|.
T Consensus 17 ~~C~C--D~~C~ 26 (51)
T 1oc0_B 17 KKCQC--DELCS 26 (51)
T ss_dssp SSSBC--STTGG
T ss_pred CCCCC--Ccccc
Confidence 34555 44443
No 10
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=9.40 E-value=82 Score=17.46 Aligned_cols=9 Identities=67% Similarity=1.283 Sum_probs=0.0
Q ss_pred CCCCeecCC
Q psy14833 37 FGTRKCECG 45 (63)
Q Consensus 37 ~~~~~C~CG 45 (63)
+.+++|+||
T Consensus 19 ~kT~~C~CG 27 (71)
T 1gh9_A 19 AKTRKCVCG 27 (71)
T ss_dssp CSEEEETTT
T ss_pred CcEEECCCC
Done!