RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14833
         (63 letters)



>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc,
          magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1
          PDB: 2bz0_A
          Length = 196

 Score = 25.2 bits (56), Expect = 1.2
 Identities = 4/12 (33%), Positives = 7/12 (58%)

Query: 34 GSVFGTRKCECG 45
          G    + +C+CG
Sbjct: 57 GDALFSLRCDCG 68


>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
           NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
          Length = 1245

 Score = 24.8 bits (53), Expect = 2.5
 Identities = 5/52 (9%), Positives = 9/52 (17%), Gaps = 1/52 (1%)

Query: 13  NDFHPFAWWVSRNNHKMDYW-GGSVFGTRKCECGILGTCIDPTKWCNCDAGQ 63
           ND       V R    +          T +             +       +
Sbjct: 738 NDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERR 789


>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH,
           interface, binding, antibody, hydrolase; 1.90A {Camelus
           dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A
          Length = 148

 Score = 23.6 bits (52), Expect = 4.3
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)

Query: 3   DT----CSESYPVENDFHPFAWWVSRNNHKMDYWG 33
           DT    C+    +   ++     +S   +  D WG
Sbjct: 90  DTAIYYCAADSTIYASYYECGHGLSTGGYGYDSWG 124


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.139    0.538 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,020,549
Number of extensions: 41102
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 10
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)