BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14840
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 46 DELDGVMAVPLFRYSV-ISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTND 104
D+ DG A P+ SV I+ I V+++LGN LVC+AV ++ ++ VTN+F+++L+ D
Sbjct: 20 DDDDG--APPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD 77
Query: 105 IILTLFCVPFS 115
I + + +PF+
Sbjct: 78 IAVGVLAIPFA 88
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 51 VMAVPLFRYSV-ISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTL 109
V A P+ SV I+ I V+++LGN LVC+AV ++ ++ VTN+F+++L+ DI + +
Sbjct: 13 VGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGV 72
Query: 110 FCVPFS 115
+PF+
Sbjct: 73 LAIPFA 78
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 37/49 (75%)
Query: 67 VIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
I V+++LGN LVC+AV ++ ++ VTN+F+++L+ DI++ + +PF+
Sbjct: 15 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFA 63
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%)
Query: 68 IFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
I V+++LGN LVC+AV ++ ++ VTN+F+++L+ DI + + +PF+
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 63
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 36/49 (73%)
Query: 67 VIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
I V+++LGN LVC+AV ++ ++ VTN+F+++ + DI++ + +PF+
Sbjct: 15 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFA 63
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 54 VPL-FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCV 112
+PL + +++ Y + V LLGN LV Y +L KMKT TN +I NL+ D L L +
Sbjct: 120 LPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALAD-TLVLLTL 178
Query: 113 PF 114
PF
Sbjct: 179 PF 180
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 53 AVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCV 112
A+P+ + + YSV+FV+ L+GN LV + ++ KMKT TN +I NL+ D ++T +
Sbjct: 20 AIPVI---ITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTT-TM 75
Query: 113 PFS 115
PF
Sbjct: 76 PFQ 78
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 59 YSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
Y +S+ ++I + + GNGLVC AVL + ++T TN+ +++L+ D+++ +P+
Sbjct: 40 YYALSYCALILAI-VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPW 94
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 60 SVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILT 108
++++ YS++ V+ L GN LV Y ++ KMKT TN +I NL+ D + T
Sbjct: 19 TIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALAT 67
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 190 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 238
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 48 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 96
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 49 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 97
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 49 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 97
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 42 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 90
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 17 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 65
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 60 SVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILT 108
++ + YS + + LLGN LV + ++ K+KT TN +I NL+ D + T
Sbjct: 16 AITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALAT 64
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
+++ ++ + GN LV A+ +Q+++T+TN FI +L+ D+++ L VPF
Sbjct: 19 ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFG 68
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
+++ ++ + GN LV A+ +Q+++T+TN FI +L+ D+++ L VPF
Sbjct: 19 ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFG 68
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 41 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 90
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 18 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 67
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 13 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 62
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 52 MAVPLFRYSVISF--------YSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTN 103
M P FR +F YS+IF+ ++GNGLV + +K++++T+ + ++LS
Sbjct: 34 MKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVA 93
Query: 104 DIILTLFCVPF 114
D++ + +PF
Sbjct: 94 DLLFVI-TLPF 103
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 52 MAVPLFRYSVISF--------YSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTN 103
M P FR +F YS+IF+ ++GNGLV + +K++++T+ + ++LS
Sbjct: 34 MKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVA 93
Query: 104 DIILTLFCVPF 114
D++ + +PF
Sbjct: 94 DLLFVI-TLPF 103
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 52 MAVPLFRYSVISF--------YSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTN 103
M P FR +F YS+IF+ ++GNGLV + +K++++T+ + ++LS
Sbjct: 34 MKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVA 93
Query: 104 DIILTLFCVPF 114
D++ + +PF
Sbjct: 94 DLLFVI-TLPF 103
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 30/38 (78%)
Query: 70 VMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIIL 107
+++++GN LV A V++++KTV N+F+++L+ D+I+
Sbjct: 24 LVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLII 61
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 31/41 (75%)
Query: 70 VMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLF 110
+++++GN LV ++ V++ ++TV N+F+ +L+ D+I+ +F
Sbjct: 35 LVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVF 75
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFF 96
+Y VI Y+++F++SLLGN LV +L S+ ++VT+ +
Sbjct: 11 KYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVY 49
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 66 SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVP 113
S I ++++ N LV YAV +K+ TV N +I++LS D+I+ +P
Sbjct: 16 STICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 65 YSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLF 110
Y+VI V S++GN +V + +L ++M+TVTN+F++NL+ + + F
Sbjct: 39 YTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAF 84
>pdb|1EJ6|D Chain D, Reovirus Core
pdb|1EJ6|E Chain E, Reovirus Core
pdb|2CSE|X Chain X, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Y Chain Y, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Z Chain Z, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 418
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 42 IYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKM 89
+Y+CD+ + P F++ V S + +++L G G + Y V V + M
Sbjct: 124 VYDCDDYPFLARDPRFKHRVYQQLSAVTLLNLTGFGPISY-VRVDEDM 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.142 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,073,016
Number of Sequences: 62578
Number of extensions: 104516
Number of successful extensions: 270
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 34
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)