RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14840
         (119 letters)



>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
           This family contains, amongst other G-protein-coupled
           receptors (GCPRs), members of the opsin family, which
           have been considered to be typical members of the
           rhodopsin superfamily. They share several motifs, mainly
           the seven transmembrane helices, GCPRs of the rhodopsin
           superfamily. All opsins bind a chromophore, such as
           11-cis-retinal. The function of most opsins other than
           the photoisomerases is split into two steps: light
           absorption and G-protein activation. Photoisomerases, on
           the other hand, are not coupled to G-proteins - they are
           thought to generate and supply the chromophore that is
           used by visual opsins.
          Length = 251

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 11/35 (31%), Positives = 23/35 (65%)

Query: 81  YAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
             +L ++K++T TN F++NL+  D++  L   P++
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWA 35


>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
           protein; Provisional.
          Length = 335

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 60  SVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTL 109
            +I  YS IF   L+GN +V Y VL   K+KT  + +++NL+ +D++  +
Sbjct: 42  ILIVVYSTIFFFGLVGNIIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFVM 90


>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
           Provisional.
          Length = 417

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 64  FYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTL 109
           FY +IF++ L GN  +   +L  +K+KT+T+ +I NL+ +D+I  +
Sbjct: 104 FYIIIFILGLFGNAAII-MILFCKKIKTITDIYIFNLAISDLIFVI 148


>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
          Length = 323

 Score = 32.6 bits (74), Expect = 0.028
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 43  YNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLST 102
           Y  +E D  M      Y VI FY ++F+  L+GN LV  AVL+ ++   V + ++ N++ 
Sbjct: 13  YFEEECDFEMVNSDVNYFVIVFYILLFIFGLIGNVLVI-AVLIVKRFMFVVDVYLFNIAM 71

Query: 103 NDIILTLFCVPF 114
           +D++L +F  PF
Sbjct: 72  SDLML-VFSFPF 82


>gnl|CDD|163640 cd07397, MPP_DevT, Myxococcus xanthus DevT and related proteins,
          metallophosphatase domain.  DevT is a component in the
          C-signal response pathway in Myxococcus xanthus that
          stimulates the developmentally regulated expression of
          the FruA response regulator protein and is required for
          methylation of FrzCD during fruiting body formation.
          DevT mutants having an in-frame deletion in the devT
          gene, display delayed aggregation and a cell autonomous
          sporulation defect.  DevT belongs to the
          metallophosphatase (MPP) superfamily.  MPPs are
          functionally diverse, but all share a conserved domain
          with an active site consisting of two metal ions
          (usually manganese, iron, or zinc) coordinated with
          octahedral geometry by a cage of histidine, aspartate,
          and asparagine residues. The MPP superfamily includes:
          Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
          debranching enzymes, YfcE-like phosphodiesterases,
          purple acid phosphatases (PAPs), YbbF-like
          UDP-2,3-diacylglucosamine hydrolases, and acid
          sphingomyelinases (ASMases).  The conserved domain is a
          double beta-sheet sandwich with a di-metal active site
          made up of residues located at the C-terminal side of
          the sheets. This domain is thought to allow for
          productive metal coordination.
          Length = 238

 Score = 27.7 bits (62), Expect = 1.5
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 6  AEDKMDILEQLNVNLTLFIEHFSETS----KNYSLLPYP 40
           ED    L  L  +L LF+  F   S    +  S LP P
Sbjct: 15 LEDIK-ALHLLQPDLVLFVGDFGNESVQLVRAISSLPLP 52


>gnl|CDD|200419 TIGR04168, TIGR04168, TIGR04168 family protein.  Members of this
          uncharacterized protein family are restricted, in 49 of
          50 genomes, to organisms with a family TIGR04167
          radical SAM protein, which occasionally is a
          selenoprotein.
          Length = 269

 Score = 26.1 bits (58), Expect = 4.6
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 13 LEQLNVNLTLFIEHFSETS----KNYSLLPYP 40
          L+QL  +L LF+  F   S    +  + LP P
Sbjct: 1  LKQLGPDLVLFVGDFGNESLELVRAIASLPLP 32


>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional.
          Length = 438

 Score = 25.6 bits (57), Expect = 7.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 7/32 (21%)

Query: 48  LDGVMAV-----PLFRYSVISFYSVIF--VMS 72
           L G++ V     P FRYS+IS  +V    +M+
Sbjct: 159 LAGILFVIEEMRPQFRYSLISIKAVFIGVIMA 190


>gnl|CDD|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding.
          Members of this family adopt a multihelical structure,
          with an irregular array of long and short
          alpha-helices. They allow binding of the protein to
          substrate, such as the N-terminal tails of histones H3
          and H4 and the large subunit of the Rubisco holoenzyme
          complex.
          Length = 128

 Score = 25.0 bits (55), Expect = 9.9
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 5  LAEDKMDILEQLNV----NLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYS 60
          L EDK+ +LE+  +    N TL I+     S    LL Y  +    + +      +   +
Sbjct: 7  LYEDKLQLLERNGLLENGNFTLGIDG--PPSWE--LLAYLRLLCLSDEELTAWKSVLLGA 62

Query: 61 VISF 64
          VI  
Sbjct: 63 VIGH 66


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0810    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,957,249
Number of extensions: 519654
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 36
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.0 bits)