RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14840
(119 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 78.2 bits (193), Expect = 2e-18
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 28 SETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQ 87
S L N E + + + Y+VI V S++GN +V + +L +
Sbjct: 2 DNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHK 61
Query: 88 KMKTVTNFFIINLSTNDIILTLFCVPFS 115
+M+TVTN+F++NL+ + + F +
Sbjct: 62 RMRTVTNYFLVNLAFAEASMAAFNTVVN 89
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 72.5 bits (178), Expect = 2e-16
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 57 FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
+ +++ Y + V LLGN LV Y +L KMKT TN +I NL+ D ++ L +PF
Sbjct: 124 LKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPF 180
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 64.3 bits (156), Expect = 2e-13
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 61 VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
I+ I V+++LGN LVC+AV ++ ++ VTN+F+++L+ DI + + +PF+
Sbjct: 34 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 88
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 63.9 bits (156), Expect = 2e-13
Identities = 10/61 (16%), Positives = 28/61 (45%)
Query: 55 PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
P + ++ ++ ++ N L Y + +K++T N+ ++NL+ D+ +
Sbjct: 35 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 94
Query: 115 S 115
+
Sbjct: 95 T 95
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 64.0 bits (155), Expect = 2e-13
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 61 VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
I+ I V+++LGN LVC+AV ++ ++ VTN+F+++L+ DI + + +PF+
Sbjct: 24 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 78
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 63.5 bits (154), Expect = 3e-13
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 55 PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
+ ++++ YS++ V+ L GN LV Y ++ KMKT TN +I NL+ D + +PF
Sbjct: 14 MVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA-TSTLPF 72
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 61.5 bits (149), Expect = 2e-12
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 14 EQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSL 73
+ L + + N + D A ++ + S+I + +
Sbjct: 139 RWDEAAVNLAKSRWYNQTPNRAKRVITTFRTG-TWDAYAADEVWVVGMGIVMSLIVLAIV 197
Query: 74 LGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 198 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 239
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 60.1 bits (145), Expect = 5e-12
Identities = 13/55 (23%), Positives = 35/55 (63%)
Query: 61 VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
++ + +++++GN LV ++ V++ ++TV N+F+ +L+ D+I+ +F +
Sbjct: 26 IVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLY 80
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 59.0 bits (142), Expect = 1e-11
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 55 PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
++ + S+I + + GN LV A+ ++++TVTN+FI +L+ D+++ L VPF
Sbjct: 37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 96
Query: 115 S 115
Sbjct: 97 G 97
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 58.9 bits (142), Expect = 1e-11
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 61 VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
++ S I ++++ N LV YAV +K+ TV N +I++LS D+I+ +P +
Sbjct: 11 LVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMN 65
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 58.8 bits (142), Expect = 1e-11
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 27 FSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVIS-FYSVIFVMSLLGNGLVCYAVLV 85
+ + + E F + YS+IF+ ++GNGLV +
Sbjct: 16 IYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGY 75
Query: 86 SQKMKTVTNFFIINLSTNDIILTLFCVPF 114
+K++++T+ + ++LS D++ + +PF
Sbjct: 76 QKKLRSMTDKYRLHLSVADLLF-VITLPF 103
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 58.6 bits (141), Expect = 2e-11
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 23 FIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVIS-FYSVIFVMSLLGNGLVCY 81
+ + + S L Y C + A ++ + Y + + + GNGLVC
Sbjct: 2 YKDDDDGAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCM 61
Query: 82 AVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
AVL + ++T TN+ +++L+ D+++ +P+
Sbjct: 62 AVLKERALQTTTNYLVVSLAVADLLVATLVMPWV 95
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 54.7 bits (132), Expect = 3e-10
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 48 LDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIIL 107
+ + + + +++ ++ + GN LV A+ +Q+++T+TN FI +L+ D+++
Sbjct: 1 MGAELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVV 60
Query: 108 TLFCVPFS 115
L VPF
Sbjct: 61 GLLVVPFG 68
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 54.2 bits (130), Expect = 6e-10
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 64 FYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLF-CVPFS 115
F + ++ GNG+V Y ++ ++T N FIINL+ +D +L P
Sbjct: 40 FIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLM 92
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 51.0 bits (121), Expect = 9e-09
Identities = 10/55 (18%), Positives = 22/55 (40%)
Query: 61 VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
+ +I +L N V + ++K +FI NL+ +D++ +
Sbjct: 66 TSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANL 120
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell
inner membrane, cell membrane, membrane, transmembrane;
HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A
3q7k_A
Length = 285
Score = 26.0 bits (57), Expect = 3.0
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 68 IFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLLH 119
+ +L N +VC AV +S +++ + I ++L + S H
Sbjct: 164 AVCLGILANLMVCLAVWMSYSGRSLMDKAFI------MVLPVAMFVASGFEH 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 3.7
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 34/125 (27%)
Query: 7 EDKMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYS 66
+LE L L I+ N+ D + L +S+ +
Sbjct: 193 NSPETVLEMLQ-KLLYQID------PNW----------TSRSDHSSNIKLRIHSIQAELR 235
Query: 67 VIFVMSLLGNGL-----VCYA-----------VLVSQKMKTVTNFFIINLSTNDIILTLF 110
+ N L V A +L++ + K VT+ F+ +T I L
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHH 294
Query: 111 CVPFS 115
+ +
Sbjct: 295 SMTLT 299
Score = 24.8 bits (53), Expect = 8.9
Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 46/148 (31%)
Query: 10 MDILEQLNVNLTLFIEHFSETS--KNYSLL--PYPPIYNCDELDGVMAV----PLFR-YS 60
L + ++ F E NY L P + M + L+
Sbjct: 68 FWTLLSKQEEM---VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 61 VISFYSV---------------------IFVMSLLGNGLVCYAVLVSQKMKTVTNF---- 95
V + Y+V + + +LG+G A+ V K
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 96 FIINL----STNDIILTLFCVPFSRLLH 119
F +NL S ++ L +LL+
Sbjct: 185 FWLNLKNCNSPETVLEML-----QKLLY 207
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 25.9 bits (57), Expect = 4.1
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 46 DELDGVMAVPLFRYSVISF 64
++ D F V +
Sbjct: 409 NQWDAATNFDGFTQPVSEW 427
>3kly_A Putative formate transporter 1; membrane protein, channel,
structural genomics, PSI-2, protein structure
initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB:
3klz_A*
Length = 280
Score = 24.8 bits (54), Expect = 8.4
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 68 IFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLLH 119
F + L+ N LVC AV ++ +++T+ ++ +IL + S H
Sbjct: 163 AFALGLMCNILVCLAVWMTFSARSLTDKVMV------LILPVAMFVSSGFEH 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.417
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,726,514
Number of extensions: 87968
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 25
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)