RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14840
         (119 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 53.8 bits (128), Expect = 3e-10
 Identities = 10/63 (15%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 54  VPLFRYSVIS-FYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCV 112
              +++S+++ +  ++ ++    N L  Y  +  +K++T  N+ ++NL+  D+ +     
Sbjct: 32  AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGF 91

Query: 113 PFS 115
             +
Sbjct: 92  TTT 94


>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal,
          substrate-binding domain {Garden pea (Pisum sativum)
          [TaxId: 3888]}
          Length = 176

 Score = 24.9 bits (54), Expect = 2.8
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 5  LAEDKMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFR 58
            +DK+D+ E      T + + F   +    LLPY  +      D  +   LFR
Sbjct: 14 FFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFR 67


>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A
          subunit {Acidaminococcus fermentans [TaxId: 905]}
          Length = 299

 Score = 23.6 bits (50), Expect = 7.3
 Identities = 4/15 (26%), Positives = 8/15 (53%)

Query: 38 PYPPIYNCDELDGVM 52
          P  P +  D+L  ++
Sbjct: 11 PKAPAFPADDLYSMV 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,492
Number of extensions: 16509
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 5
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)