BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14842
         (858 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
           Tbc1 Domain Family Member 14
          Length = 334

 Score = 37.7 bits (86), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 76/153 (49%), Gaps = 13/153 (8%)

Query: 427 RKGRSVTDRVVCVLG-FAC--PDITYSPAIYPIAAMLLHFMSEEECYNSLTSLVS--CKH 481
           ++G    D +  +LG + C  PD+ Y   +  IAA+L+  +   + + + ++L++  C+ 
Sbjct: 128 QQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQM 187

Query: 482 RTFVTQTKLLYEVTWRTVMHIS-KKHVKSAAAHLTRHRQGSRVERIYM-DWMWWIL-QGL 538
             F     L+  +T+     +  ++++    AH    ++ +    IY+ DW++ +  + L
Sbjct: 188 AFFRVDHGLM--LTYFAAFEVFFEENLPKLFAHF---KKNNLTPDIYLIDWIFTLYSKSL 242

Query: 539 PFNHLVRVLDCYLHEGIKVLYRVAMAILLLFHK 571
           P +   R+ D +  +G + L+R A+ IL LF  
Sbjct: 243 PLDLACRIWDVFCRDGEEFLFRTALGILKLFED 275


>pdb|4ACJ|A Chain A, Crystal Structure Of The Tldc Domain Of Oxidation
           Resistance Protein 2 From Zebrafish
          Length = 167

 Score = 33.9 bits (76), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 798 SHTLTIRELFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVE-QHEPTLLMIKTTN 856
           S  L   ++  L   LP R   Y   L ++T +HG S+ T Y  ++ Q  P LL+IK ++
Sbjct: 5   SDLLEAEQIEKLAKHLPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSD 64

Query: 857 NE 858
            +
Sbjct: 65  GQ 66


>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
           Dehydrogenases, Atcad5
 pdb|2CF6|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
           Dehydrogenases Atcad5
          Length = 357

 Score = 30.8 bits (68), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 6   IHHLLKPLTSLLKIFSMLPLSSGRSNPRHFLSYLYSLG 43
           +HH L+P  SLLK+   L L    +NP  FL+ L  LG
Sbjct: 254 VHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLG 291


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,122,400
Number of Sequences: 62578
Number of extensions: 756342
Number of successful extensions: 1833
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1830
Number of HSP's gapped (non-prelim): 5
length of query: 858
length of database: 14,973,337
effective HSP length: 107
effective length of query: 751
effective length of database: 8,277,491
effective search space: 6216395741
effective search space used: 6216395741
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)