Query psy14842
Match_columns 858
No_of_seqs 336 out of 1616
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 22:11:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.6E-37 5.4E-42 328.6 20.2 254 367-634 26-293 (310)
2 3qye_A TBC1 domain family memb 100.0 3.6E-36 1.2E-40 320.5 23.2 255 367-636 52-326 (331)
3 2qq8_A TBC1 domain family memb 100.0 2.6E-35 8.8E-40 316.0 14.3 189 416-618 116-312 (334)
4 4hl4_A TBC1 domain family memb 100.0 3.9E-33 1.3E-37 293.5 11.4 186 416-614 89-285 (292)
5 2qfz_A TBC1 domain family memb 100.0 8.4E-33 2.9E-37 296.5 10.6 209 393-615 77-333 (345)
6 1fkm_A Protein (GYP1P), ORF YO 100.0 1.6E-31 5.4E-36 293.6 14.2 208 393-615 60-379 (396)
7 3qwl_A TBC1 domain family memb 99.9 3.8E-25 1.3E-29 235.4 5.7 213 380-614 65-282 (294)
8 4acj_A WU\:FB25H12 protein,; i 99.1 3E-11 1E-15 119.2 6.3 64 795-858 2-66 (167)
9 2qq8_A TBC1 domain family memb 98.4 1.5E-07 5.2E-12 101.0 4.2 90 659-758 231-321 (334)
10 3hzj_A Rabgap1L, RAB GTPase-ac 98.2 4.7E-07 1.6E-11 95.8 2.9 87 658-756 191-284 (310)
11 3qye_A TBC1 domain family memb 98.1 1.3E-06 4.3E-11 93.2 3.6 89 658-753 225-315 (331)
12 3qwl_A TBC1 domain family memb 97.6 3.4E-05 1.2E-09 82.3 3.8 76 660-745 206-282 (294)
13 4hl4_A TBC1 domain family memb 97.5 4.8E-05 1.6E-09 80.0 3.7 80 658-745 204-285 (292)
14 2qfz_A TBC1 domain family memb 97.2 9.6E-05 3.3E-09 79.3 2.1 82 659-747 247-334 (345)
15 1fkm_A Protein (GYP1P), ORF YO 96.9 0.0002 7E-09 78.8 1.3 80 659-746 234-379 (396)
16 4hcz_A PHD finger protein 1; p 23.1 24 0.00081 29.7 0.8 23 201-223 7-30 (58)
No 1
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=328.60 Aligned_cols=254 Identities=14% Similarity=0.202 Sum_probs=201.8
Q ss_pred HHhHhhhCccccccccchhhHhHHHHHh--ccCccccccccCCcCCCCCcc--cCCCCCCC---CC--CchhHHHHHHHH
Q psy14842 367 LMDLEKYNIQFTAHGFFSLEYSLFRKAL--VMDNSKFLELPEKPIMLPPFV--DSAHRLPY---HL--TRKGRSVTDRVV 437 (858)
Q Consensus 367 l~~l~k~gi~~~~~gY~~ie~sLrgq~l--~~~pg~Y~eLl~ks~~lPefi--D~~rt~~y---~l--n~~Gq~sLrRIL 437 (858)
++++.+.||| ..+|+..|....... ...++.|.++.++..+..+.+ |..|+.+. +. ++.|+++|+|||
T Consensus 26 l~~l~~~GIP---~~lR~~vW~~llg~~~~~~~~~~Y~~l~~~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL 102 (310)
T 3hzj_A 26 LSTLVKSGVP---EALRAEVWQLLAGCHDNQAMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKIC 102 (310)
T ss_dssp HHHHHHHCCC---GGGHHHHHHHHTTCCCCHHHHHHHHHHTTSCCTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHH
T ss_pred HHHHHHCCCC---HHHHHHHHHHHHCCCcchhHHHHHHHHHhccCCcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHH
Confidence 4556667773 334444444332211 123567988887765544444 56676443 33 347899999999
Q ss_pred hHHhhcCCCCcccCChhHHHHHHHhhcChhHHHHHHHHhhhcc-ccCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy14842 438 CVLGFACPDITYSPAIYPIAAMLLHFMSEEECYNSLTSLVSCK-HRTFVTQTKLLYEVTWRTVMHISKKHVKSAAAHLTR 516 (858)
Q Consensus 438 ~AYS~~nPdIGYCQGMN~IAAlLLlymdEEdAFW~Lv~LLe~~-~~~Yf~qs~~~l~~~~~tfe~LLkk~lPkL~~HL~k 516 (858)
.||+.+||++|||||||+|||+||++++|++||||++++|++. .+++|.+++.++...+.+++.++++++|++++|+++
T Consensus 103 ~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~ 182 (310)
T 3hzj_A 103 KAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSD 182 (310)
T ss_dssp HHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 688899999999999999999999999999999999
Q ss_pred hcCCCChhHhhHHHHHHccC-CCCchhhHHHHHHHHhcCchHHHHHHHHHHHHhhhhccCCCchhhhhcchhHHHHHHH-
Q psy14842 517 HRQGSRVERIYMDWMWWILQ-GLPFNHLVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAALS- 594 (858)
Q Consensus 517 l~~Gidi~~~~s~WFLTLFs-~LPfe~vLRIWD~FLlEG~KVLfRVALAILKl~ek~Lls~~sewLl~l~~edv~~~L~- 594 (858)
. |+++..++.+||+|+|+ ++|++.++||||+|+.||.++++++|+|+++.+++++ .+.+.+++...++
T Consensus 183 ~--~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~L--------l~~d~~~~l~~l~~ 252 (310)
T 3hzj_A 183 L--NLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDL--------LQADFEGALKFFRV 252 (310)
T ss_dssp H--TCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHH--------HTCCHHHHHHHHHT
T ss_pred c--CCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH--------HcCCHHHHHHHHHH
Confidence 7 57777788999999997 9999999999999999999999999999999999985 3334444444443
Q ss_pred HhhhhCC--CCHHHHHHHHHccCCCChhHHHHHHHHHHhhhh
Q psy14842 595 KFCRQMP--VSPRKVLKVAFGIRALGSTYIQRVFIKTEMTLK 634 (858)
Q Consensus 595 ~F~KnIp--iDpDkLLk~AFsIr~LSrtyIqRvRlK~EmaLK 634 (858)
.+++... .|++.+++.|++++ ++++.|++.+.+++..-+
T Consensus 253 ~lp~~~~~~~d~~~ll~~A~~l~-~~~~~l~~~~~ey~~~~~ 293 (310)
T 3hzj_A 253 QLPKRYRAEENARRLMEQACNIK-VPTKKLKKYEKEYQTMRE 293 (310)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHC-
T ss_pred hCcccccccccHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 2333222 57899999999998 788999999999986333
No 2
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=3.6e-36 Score=320.54 Aligned_cols=255 Identities=15% Similarity=0.220 Sum_probs=200.9
Q ss_pred HHhHhhhCccccccccchhhHhHHHHH----------hccCccccccccCCcCCCCCcc--cCCCCCC---CCC--Cchh
Q psy14842 367 LMDLEKYNIQFTAHGFFSLEYSLFRKA----------LVMDNSKFLELPEKPIMLPPFV--DSAHRLP---YHL--TRKG 429 (858)
Q Consensus 367 l~~l~k~gi~~~~~gY~~ie~sLrgq~----------l~~~pg~Y~eLl~ks~~lPefi--D~~rt~~---y~l--n~~G 429 (858)
++++.+.||| ..+++..|...... ...+++.|.++.++..+..+.+ |..|+.+ ++. ++.|
T Consensus 52 l~~~~~~GIP---~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~ 128 (331)
T 3qye_A 52 MHSAVGQGVP---RHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLGAG 128 (331)
T ss_dssp HHHHHHTCCC---GGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTSCCTTHHHHHHHHTTSSTTSTTTCSTTCHH
T ss_pred HHHHHHcCCC---HHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHhcCCchhHHHHhhcccCCCchhhcCCCccc
Confidence 5677778984 34444444433321 1246789999998765533333 5666643 333 3589
Q ss_pred HHHHHHHHhHHhhcCCCCcccCChhHHHHHHHhhcChhHHHHHHHHhhhcc-ccCcccccHHHHHHHHHHHHHHHHHHhH
Q psy14842 430 RSVTDRVVCVLGFACPDITYSPAIYPIAAMLLHFMSEEECYNSLTSLVSCK-HRTFVTQTKLLYEVTWRTVMHISKKHVK 508 (858)
Q Consensus 430 q~sLrRIL~AYS~~nPdIGYCQGMN~IAAlLLlymdEEdAFW~Lv~LLe~~-~~~Yf~qs~~~l~~~~~tfe~LLkk~lP 508 (858)
+++|+|||.||+.+||++|||||||+|||+||++++|++||||++++|++. .+++|.+++.+.+..+.+++.++++++|
T Consensus 129 ~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p 208 (331)
T 3qye_A 129 QLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHR 208 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987 6788999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChhHhhHHHHHHccC-CCCchhhHHHHHHHHhcCchHHHHHHHHHHHHhhhhccCCCchhhhhcchh
Q psy14842 509 SAAAHLTRHRQGSRVERIYMDWMWWILQ-GLPFNHLVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDH 587 (858)
Q Consensus 509 kL~~HL~kl~~Gidi~~~~s~WFLTLFs-~LPfe~vLRIWD~FLlEG~KVLfRVALAILKl~ek~Lls~~sewLl~l~~e 587 (858)
++++||++. |+++..++.+||+|+|+ .+|++.++||||+|+.||.++++++|+|+++.+++.+.+. .+.+
T Consensus 209 ~L~~hL~~~--~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~-------~~~~ 279 (331)
T 3qye_A 209 DLYNHLEEH--EIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQH-------ENLE 279 (331)
T ss_dssp HHHHHHHHT--TCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC-------CSHH
T ss_pred HHHHHHHHc--CCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcC-------CCHH
Confidence 999999987 57777778899999997 9999999999999999999999999999999999986321 1344
Q ss_pred HHHHHHHHhhhhCC-CCHHHHHHHHHccCCCChhHHHHHHHHHHhhhhcc
Q psy14842 588 GIEAALSKFCRQMP-VSPRKVLKVAFGIRALGSTYIQRVFIKTEMTLKSK 636 (858)
Q Consensus 588 dv~~~L~~F~KnIp-iDpDkLLk~AFsIr~LSrtyIqRvRlK~EmaLKse 636 (858)
++...+++.+.+++ .|+++++++|+.++. | +.+++....|.. ++++
T Consensus 280 ~il~~l~~~~p~~~~~di~~li~~A~~l~~-s-~~l~~~e~ey~~-l~~~ 326 (331)
T 3qye_A 280 TIVDFIKSTLPNLGLVQMEKTINQVFEMDI-A-KQLQAYEVEYHV-LQEE 326 (331)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHCCC-H-HHHHHHHHHHHH-HHC-
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhCCc-h-HHHHHHHHHHHH-HHHH
Confidence 55555554433332 578999999999985 4 566776666653 4443
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=316.00 Aligned_cols=189 Identities=16% Similarity=0.333 Sum_probs=164.1
Q ss_pred cCCCCCC---CCC-CchhHHHHHHHHhHHhhcCCCCcccCChhHHHHHHHhhcChhHHHHHHHHhhhcc-ccCcccccHH
Q psy14842 416 DSAHRLP---YHL-TRKGRSVTDRVVCVLGFACPDITYSPAIYPIAAMLLHFMSEEECYNSLTSLVSCK-HRTFVTQTKL 490 (858)
Q Consensus 416 D~~rt~~---y~l-n~~Gq~sLrRIL~AYS~~nPdIGYCQGMN~IAAlLLlymdEEdAFW~Lv~LLe~~-~~~Yf~qs~~ 490 (858)
|..|+.+ ++. ++.++++|+|||.||+.+||++|||||||+|||+||++++|++|||||+++|++. ..+||.++..
T Consensus 116 Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~~~~~~~~~ 195 (334)
T 2qq8_A 116 DISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHG 195 (334)
T ss_dssp HHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHHHHHHHSSCCH
T ss_pred HHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhHHhccCCChH
Confidence 5566643 333 3478999999999999999999999999999999999999999999999999987 4578888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCChhHhhHHHHHHccC-CCCchhhHHHHHHHHhcCchHHHHHHHHHHHHh
Q psy14842 491 LYEVTWRTVMHISKKHVKSAAAHLTRHRQGSRVERIYMDWMWWILQ-GLPFNHLVRVLDCYLHEGIKVLYRVAMAILLLF 569 (858)
Q Consensus 491 ~l~~~~~tfe~LLkk~lPkL~~HL~kl~~Gidi~~~~s~WFLTLFs-~LPfe~vLRIWD~FLlEG~KVLfRVALAILKl~ 569 (858)
+.+..+.+|+.++++++|++++||++. |+++..++.+||+|+|+ ++|++.++||||+|+.||.++++++|+|+++.+
T Consensus 196 ~~~~~~~~~~~ll~~~~P~L~~hL~~~--~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~ 273 (334)
T 2qq8_A 196 LMLTYFAAFEVFFEENLPKLFAHFKKN--NLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLF 273 (334)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHT--TCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHc--CCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999999999999997 57777778899999997 999999999999999999999999999999999
Q ss_pred hhhccCCCchhhhhcchhHHHHHHHHhhhhCC--CCHHHHHHHHHccCCCC
Q psy14842 570 HKFSSSHNSDWMREISDHGIEAALSKFCRQMP--VSPRKVLKVAFGIRALG 618 (858)
Q Consensus 570 ek~Lls~~sewLl~l~~edv~~~L~~F~KnIp--iDpDkLLk~AFsIr~LS 618 (858)
++.+. +.+.++ +..|++++| +|+|.+++.|.+++.-+
T Consensus 274 ~~~Ll--------~~d~~~----il~~L~~lp~~~d~~~l~~~a~~l~~~~ 312 (334)
T 2qq8_A 274 EDILT--------KMDFIH----MAQFLTRLPEDLPAEELFASIATIQMQS 312 (334)
T ss_dssp HHHHH--------TCCHHH----HHHHHHSCCTTCCHHHHHHHHHHCCCEE
T ss_pred HHHHh--------cCCHHH----HHHHHHhCCCcCCHHHHHHHHHHccCcH
Confidence 99852 233333 445667777 68999999999988643
No 4
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.98 E-value=3.9e-33 Score=293.48 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=158.6
Q ss_pred cCCCCCCCC---C----CchhHHHHHHHHhHHhhcCCCCcccCChhHHHHHHHhhcChhHHHHHHHHhhhccccCccccc
Q psy14842 416 DSAHRLPYH---L----TRKGRSVTDRVVCVLGFACPDITYSPAIYPIAAMLLHFMSEEECYNSLTSLVSCKHRTFVTQT 488 (858)
Q Consensus 416 D~~rt~~y~---l----n~~Gq~sLrRIL~AYS~~nPdIGYCQGMN~IAAlLLlymdEEdAFW~Lv~LLe~~~~~Yf~qs 488 (858)
|..|+.+.+ . .+.+++.|+|||.||+.+||++|||||||+|||+||++++||+||||++++++...++||.++
T Consensus 89 Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~l~~~~~~~ 168 (292)
T 4hl4_A 89 DVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDPT 168 (292)
T ss_dssp HHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTTTTGGGCSS
T ss_pred hhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhcccc
Confidence 566775433 2 246789999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCChhHhhHHHHHHccC-CCC-chhhHHHHHHHHhcCchHHHHHHHHHH
Q psy14842 489 KLLYEVTWRTVMHISKKHVKSAAAHLTRHRQGSRVERIYMDWMWWILQ-GLP-FNHLVRVLDCYLHEGIKVLYRVAMAIL 566 (858)
Q Consensus 489 ~~~l~~~~~tfe~LLkk~lPkL~~HL~kl~~Gidi~~~~s~WFLTLFs-~LP-fe~vLRIWD~FLlEG~KVLfRVALAIL 566 (858)
+.+.+....+++.++++.+|++++|+++. |++ ..++.+||+|+|+ ++| ++.++||||+|+.||.++++++|+|++
T Consensus 169 ~~~~~~~~~~l~~ll~~~~P~L~~hL~~~--~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail 245 (292)
T 4hl4_A 169 MDNTKHILNYLMPIIDQVNPELHDFMQSA--EVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIV 245 (292)
T ss_dssp SCTTTGGGGGHHHHHHHHCHHHHHHHC-C--CCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCHHHHHHHHHc--CCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 88888888899999999999999999987 343 3455799999995 886 999999999999999999999999999
Q ss_pred HHhhhhccCCCchhhhhcchhHHHHHHHHhhhhCC--CCHHHHHHHHHcc
Q psy14842 567 LLFHKFSSSHNSDWMREISDHGIEAALSKFCRQMP--VSPRKVLKVAFGI 614 (858)
Q Consensus 567 Kl~ek~Lls~~sewLl~l~~edv~~~L~~F~KnIp--iDpDkLLk~AFsI 614 (858)
..+++++.+... + .+.+..+++++| .|++.+++.|..+
T Consensus 246 ~~~~~~Ll~~~~---------d-~~~l~~~l~~lp~~~d~~~li~~A~~l 285 (292)
T 4hl4_A 246 LYREQEVLDCDC---------D-MASVHHLLSQIPQDLPYETLISRAGDL 285 (292)
T ss_dssp HHTHHHHHTSCC---------S-TTHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---------C-HHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 999998643221 1 134566777777 7999999999875
No 5
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.97 E-value=8.4e-33 Score=296.49 Aligned_cols=209 Identities=17% Similarity=0.252 Sum_probs=168.9
Q ss_pred HhccCccccccccCCcCCC----------CCc-ccCCCCCC--CCCCchhHHHHHHHHhHHhhcCCCCcccCChhHHHHH
Q psy14842 393 ALVMDNSKFLELPEKPIML----------PPF-VDSAHRLP--YHLTRKGRSVTDRVVCVLGFACPDITYSPAIYPIAAM 459 (858)
Q Consensus 393 ~l~~~pg~Y~eLl~ks~~l----------Pef-iD~~rt~~--y~ln~~Gq~sLrRIL~AYS~~nPdIGYCQGMN~IAAl 459 (858)
.+..+++.|.++.++.... .+| .|..|+.+ ++.++.+++.|+|||.||+.+||++|||||||+|||+
T Consensus 77 ~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ 156 (345)
T 2qfz_A 77 TLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTP 156 (345)
T ss_dssp HHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSCHHHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCCccccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHH
Confidence 3445678888887653211 112 25667654 3557788999999999999999999999999999999
Q ss_pred HHhhc-------------------------ChhHHHHHHHHhhhccccCcccccHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14842 460 LLHFM-------------------------SEEECYNSLTSLVSCKHRTFVTQTKLLYEVTWRTVMHISKKHVKSAAAHL 514 (858)
Q Consensus 460 LLlym-------------------------dEEdAFW~Lv~LLe~~~~~Yf~qs~~~l~~~~~tfe~LLkk~lPkL~~HL 514 (858)
||+.+ +|++|||||+++|++. +.+|.++..+.+..+.+++.++++++|++++||
T Consensus 157 ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~-~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL 235 (345)
T 2qfz_A 157 FFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGI-QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHL 235 (345)
T ss_dssp HHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTS-GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHcc-ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98643 2999999999999997 456777788999999999999999999999999
Q ss_pred HhhcCCCChhHhhHHHHHHccC-CCCchhhHHHHHHHHhcCch---HHHHHHHHHHHHhhhhccCCCchhhhhcchhHHH
Q psy14842 515 TRHRQGSRVERIYMDWMWWILQ-GLPFNHLVRVLDCYLHEGIK---VLYRVAMAILLLFHKFSSSHNSDWMREISDHGIE 590 (858)
Q Consensus 515 ~kl~~Gidi~~~~s~WFLTLFs-~LPfe~vLRIWD~FLlEG~K---VLfRVALAILKl~ek~Lls~~sewLl~l~~edv~ 590 (858)
++. |+++..++.+||+|+|+ ++|++.++||||+|+.||.+ +++++|+|+++.+++++. .+. ++
T Consensus 236 ~~~--~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll-------~~~---d~- 302 (345)
T 2qfz_A 236 DQH--EVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEIL-------EEK---DF- 302 (345)
T ss_dssp HHT--TCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHH-------HCC---CH-
T ss_pred HHc--CCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHH-------hhC---CH-
Confidence 997 57777778899999997 99999999999999999987 689999999999998852 122 22
Q ss_pred HHHHHhhhhCCC------CHHHHHHHHHccC
Q psy14842 591 AALSKFCRQMPV------SPRKVLKVAFGIR 615 (858)
Q Consensus 591 ~~L~~F~KnIpi------DpDkLLk~AFsIr 615 (858)
+.+..+++++|. |++.++++|+.++
T Consensus 303 ~~il~~L~~~p~~~~~~~di~~ll~~A~~l~ 333 (345)
T 2qfz_A 303 QELLLFLQNLPTAHWDDEDISLLLAEAYRLK 333 (345)
T ss_dssp HHHHHHHTSCSCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCchhHHHHHHHHHHHHH
Confidence 234456667762 5899999999875
No 6
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.97 E-value=1.6e-31 Score=293.57 Aligned_cols=208 Identities=15% Similarity=0.196 Sum_probs=169.9
Q ss_pred HhccCccccccccCCcCC--------C-CCc-ccCCCCCC---CCCCchhHHHHHHHHhHHhhcCCCCcccCChhHHHHH
Q psy14842 393 ALVMDNSKFLELPEKPIM--------L-PPF-VDSAHRLP---YHLTRKGRSVTDRVVCVLGFACPDITYSPAIYPIAAM 459 (858)
Q Consensus 393 ~l~~~pg~Y~eLl~ks~~--------l-Pef-iD~~rt~~---y~ln~~Gq~sLrRIL~AYS~~nPdIGYCQGMN~IAAl 459 (858)
.+..+++.|.++.++... . .+| .|..|+.+ ++.++.++++|+|||.||+.+||++|||||||+|||+
T Consensus 60 ~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ 139 (396)
T 1fkm_A 60 FLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTP 139 (396)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHH
Confidence 344567888888764211 1 122 25567643 4567899999999999999999999999999999999
Q ss_pred HHhh----------------------cC-------hhHHHHHHHHhhhccccCcccccHHHHHHHHHHHHHHHHHHhHHH
Q psy14842 460 LLHF----------------------MS-------EEECYNSLTSLVSCKHRTFVTQTKLLYEVTWRTVMHISKKHVKSA 510 (858)
Q Consensus 460 LLly----------------------md-------EEdAFW~Lv~LLe~~~~~Yf~qs~~~l~~~~~tfe~LLkk~lPkL 510 (858)
||+. ++ |++|||||+++|++. ..+|.+++.++...+.+++.++++++|+|
T Consensus 140 ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~-~~~f~~~~~~i~~~~~~l~~LL~~~dP~L 218 (396)
T 1fkm_A 140 FFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI-TDNYIHGQPGILRQVKNLSQLVKRIDADL 218 (396)
T ss_dssp HHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG-GGGSSTTCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9874 33 999999999999986 55677788899999999999999999999
Q ss_pred HHHHHhhcCCCChhHhhHHHHHHccC-CCCchhhHHHHHHHHhcC-----------------------------------
Q psy14842 511 AAHLTRHRQGSRVERIYMDWMWWILQ-GLPFNHLVRVLDCYLHEG----------------------------------- 554 (858)
Q Consensus 511 ~~HL~kl~~Gidi~~~~s~WFLTLFs-~LPfe~vLRIWD~FLlEG----------------------------------- 554 (858)
++||++. |+++..++.+||+|+|+ ++|++.++||||+|+.||
T Consensus 219 ~~hL~~~--~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~ 296 (396)
T 1fkm_A 219 YNHFQNE--HVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKD 296 (396)
T ss_dssp HHHHHHT--TCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHc--CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccc
Confidence 9999997 57777778899999997 999999999999999999
Q ss_pred ----------------------------chHHHHHHHHHHHHhhhhccCCCchhhhhcchhHHHHHHHHhhhhCCC----
Q psy14842 555 ----------------------------IKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAALSKFCRQMPV---- 602 (858)
Q Consensus 555 ----------------------------~KVLfRVALAILKl~ek~Lls~~sewLl~l~~edv~~~L~~F~KnIpi---- 602 (858)
.++++++|+|+|...++.+. +. ++. .+..|++++|.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll--------~~---df~-~~l~~L~~~p~~~~~ 364 (396)
T 1fkm_A 297 FQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLM--------EM---DFQ-ETITFLQNPPTKDWT 364 (396)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHTHHHHT--------TC---CHH-HHHHHHTSCSCTTCC
T ss_pred cccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHHH--------hc---CHH-HHHHHHhcCCCCCcc
Confidence 26899999999999999852 22 332 34566777773
Q ss_pred --CHHHHHHHHHccC
Q psy14842 603 --SPRKVLKVAFGIR 615 (858)
Q Consensus 603 --DpDkLLk~AFsIr 615 (858)
|++.++++|+.++
T Consensus 365 ~~di~~ll~~A~~l~ 379 (396)
T 1fkm_A 365 ETDIEMLLSEAFIWQ 379 (396)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 7899999999754
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.90 E-value=3.8e-25 Score=235.41 Aligned_cols=213 Identities=16% Similarity=0.165 Sum_probs=153.7
Q ss_pred cccchhhHhHHHHHhccCccccccccCCcCCCCCcccCCCCCCCC--CCchhHHHHHHHHhHHhhcCCCCcccCChhHHH
Q psy14842 380 HGFFSLEYSLFRKALVMDNSKFLELPEKPIMLPPFVDSAHRLPYH--LTRKGRSVTDRVVCVLGFACPDITYSPAIYPIA 457 (858)
Q Consensus 380 ~gY~~ie~sLrgq~l~~~pg~Y~eLl~ks~~lPefiD~~rt~~y~--ln~~Gq~sLrRIL~AYS~~nPdIGYCQGMN~IA 457 (858)
.||.|.....+...+..++++|.+++++... .+.++. .+|.+. +..- +..-.+...++. .+|+. ++|||..||
T Consensus 65 lGylP~~~~~~~~~l~~kr~eY~~l~~~~~~-~r~I~~-~tP~~~vfl~~~-~~~~~~l~~~~~-~~~~~-~~~~~~~Ia 139 (294)
T 3qwl_A 65 LGILPPHHESHAKVMMYRKEQYLDVLHALKV-VRFVSD-ATPQAEVYLRMY-QLESGKLPRSPS-FPLEP-DDEVFLAIA 139 (294)
T ss_dssp TTSSCSBGGGHHHHHHHHHHHHHHHHHHHHH-TTSCCT-TSCHHHHHHHHH-HHHHTCCCSSTT-SCCCH-HHHHHHHHH
T ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHhhhh-hhhhhc-cCchHHHHHHHH-Hccccccccccc-CCccc-chhhHHHHH
Confidence 3566666667777888899999999887322 222222 122110 0000 000000111221 13443 559999999
Q ss_pred HHHH-hhcChhHHHHHHHHhhhccccCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCChhHhhHHHHHHccC
Q psy14842 458 AMLL-HFMSEEECYNSLTSLVSCKHRTFVTQTKLLYEVTWRTVMHISKKHVKSAAAHLTRHRQGSRVERIYMDWMWWILQ 536 (858)
Q Consensus 458 AlLL-lymdEEdAFW~Lv~LLe~~~~~Yf~qs~~~l~~~~~tfe~LLkk~lPkL~~HL~kl~~Gidi~~~~s~WFLTLFs 536 (858)
|++| ++.+|+||||||+++|++.. ++|.+++++.+. .+++++++.+|+|++|++++ |+....++++||+|+|+
T Consensus 140 a~ll~l~~~E~dAFW~f~~Lm~~l~-~~f~~~~~gl~~---~l~~LL~~~dP~L~~HL~~~--~i~~~~~~~rWfl~lF~ 213 (294)
T 3qwl_A 140 KAMEEMVEDSVDCYWITRRFVNQLN-TKYRDSLPQLPK---AFEQYLNLEDGRLLTHLRMC--SAAPKLPYDLWFKRCFA 213 (294)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHH-TTTTTTGGGHHH---HHHHHHHHHCHHHHHHHHHT--TCGGGSCHHHHHTSTTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHH-HhhCCChhHHHH---HHHHHHHHHHHHHHHHHHHC--CCCchhHHHHHHHHHhc
Confidence 9888 46699999999999999954 677778877654 46999999999999999998 45433344599999996
Q ss_pred -CCCchhhHHHHHHHHhcCchHHHHHHHHHHHHhhhhccCCCchhhhhcchhHHHHHHHHhhhhCC-CCHHHHHHHHHcc
Q psy14842 537 -GLPFNHLVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAALSKFCRQMP-VSPRKVLKVAFGI 614 (858)
Q Consensus 537 -~LPfe~vLRIWD~FLlEG~KVLfRVALAILKl~ek~Lls~~sewLl~l~~edv~~~L~~F~KnIp-iDpDkLLk~AFsI 614 (858)
++|++.++||||+++.+|.+++++||+|+|+.+++.+. +.+. .+.+..|++++| .|++.++++|+.+
T Consensus 214 ~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll--------~~~~---~~~il~~Lq~lp~~di~~ll~~A~~l 282 (294)
T 3qwl_A 214 GCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVM--------ALNS---AEKITKFLENIPQDSSDAIVSKAIDL 282 (294)
T ss_dssp TTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHH--------HCCS---HHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh--------CCCC---HHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999852 2222 244566777888 7899999999975
No 8
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio}
Probab=99.15 E-value=3e-11 Score=119.15 Aligned_cols=64 Identities=30% Similarity=0.454 Sum_probs=60.4
Q ss_pred ccCCcccchhHHHHHHhcccccccccccceeeecccccchHHHHHHhhcCC-CcEEEEEEcCCCC
Q psy14842 795 QMMSHTLTIRELFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVEQH-EPTLLMIKTTNNE 858 (858)
Q Consensus 795 ~~~S~ILt~~e~~~IwsWLP~r~~l~~P~LlfsT~~hG~SL~~fy~~~e~~-ePtlLlIKT~~~e 858 (858)
+.+|.|||.++++.||+|||+++...+|.|+|+|++||.|+++||.+|+++ .||||+|||++|.
T Consensus 2 n~~S~iLt~~~~~~L~~~LP~~~~~~~w~LlYss~~hG~S~~~~~~~~~~~~~ptllvik~~~g~ 66 (167)
T 4acj_A 2 NEPSDLLEAEQIEKLAKHLPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQ 66 (167)
T ss_dssp CCCCSSCCHHHHHHHHTTSCGGGTTCCCEEEEEHHHHCSCHHHHHHHHTTCCSCEEEEEEETTSC
T ss_pred CCCCCcCCHHHHHHHHHHCchhhccCCCeEEEEeccCCccHHHHHHHhcCCCCCEEEEEEcCCce
Confidence 457999999999999999999999999999999999999999999999985 8999999998863
No 9
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=98.37 E-value=1.5e-07 Score=101.02 Aligned_cols=90 Identities=16% Similarity=0.289 Sum_probs=73.1
Q ss_pred cchhhhhccccccc-ceeecchhccccchhhHHHHHHHHHHHHHhhcCCCCChhhhhhhhhhHHHHHhhhhhcCCCChhH
Q psy14842 659 SQHNIQMMSHTLTI-REVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAALSKFCRQMPVSPRK 737 (858)
Q Consensus 659 sQ~~I~~~s~~lp~-~~~r~~DvfL~EG~KVlyRvaLALLk~~~k~~~~~~~~~~~~~~k~~i~~~l~~~~~~~~~sp~k 737 (858)
.+|..+.+++.+|+ ...|+||+|+.||.+++||+|+|+|+.+++.-.+.+ . .++-++++++|. .++++.
T Consensus 231 ~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d--~------~~il~~L~~lp~--~~d~~~ 300 (334)
T 2qq8_A 231 IDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMD--F------IHMAQFLTRLPE--DLPAEE 300 (334)
T ss_dssp HHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCC--H------HHHHHHHHSCCT--TCCHHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCC--H------HHHHHHHHhCCC--cCCHHH
Confidence 47888889999999 899999999999999999999999999888443321 1 234458999998 489999
Q ss_pred HHHHhhhccccchhHHHHHHH
Q psy14842 738 VLKVAFGIRALGSTYIQRVFI 758 (858)
Q Consensus 738 Ll~~Af~ir~~sr~ei~~~~~ 758 (858)
|+++|.+|++..+.......+
T Consensus 301 l~~~a~~l~~~~~~k~~~~~~ 321 (334)
T 2qq8_A 301 LFASIATIQMQSRNKKWAQVL 321 (334)
T ss_dssp HHHHHHHCCCEETTEEHHHHH
T ss_pred HHHHHHHccCcHHHhhHHHHH
Confidence 999999999988755554333
No 10
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=98.19 E-value=4.7e-07 Score=95.78 Aligned_cols=87 Identities=16% Similarity=0.380 Sum_probs=68.7
Q ss_pred ccchhhhhccccccc-ceeecchhccccchhhHHHHHHHHHHHHHhhcCCCCChhhhhhhhhhHHH---HHh-hhhhcC-
Q psy14842 658 QSQHNIQMMSHTLTI-REVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEA---ALS-KFCRQM- 731 (858)
Q Consensus 658 qsQ~~I~~~s~~lp~-~~~r~~DvfL~EG~KVlyRvaLALLk~~~k~~~~~~~~~~~~~~k~~i~~---~l~-~~~~~~- 731 (858)
-.+|..+.+++.+|+ ...|+||+|+.||.++++|||+|+|+.+++ ++.+.|++. +++ ++|+..
T Consensus 191 ~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~-----------~Ll~~d~~~~l~~l~~~lp~~~~ 259 (310)
T 3hzj_A 191 ASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKE-----------DLLQADFEGALKFFRVQLPKRYR 259 (310)
T ss_dssp SHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHH-----------HHHTCCHHHHHHHHHTHHHHTTC
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH-----------HHHcCCHHHHHHHHHHhCccccc
Confidence 357888889999999 889999999999999999999999999888 444444444 443 566532
Q ss_pred -CCChhHHHHHhhhccccchhHHHHH
Q psy14842 732 -PVSPRKVLKVAFGIRALGSTYIQRV 756 (858)
Q Consensus 732 -~~sp~kLl~~Af~ir~~sr~ei~~~ 756 (858)
..++++++++|++++ .+.+++.+.
T Consensus 260 ~~~d~~~ll~~A~~l~-~~~~~l~~~ 284 (310)
T 3hzj_A 260 AEENARRLMEQACNIK-VPTKKLKKY 284 (310)
T ss_dssp SHHHHHHHHHHHHHSC-CCHHHHHHH
T ss_pred ccccHHHHHHHHHhcC-CCHHHHHHH
Confidence 257899999999999 565666554
No 11
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=98.09 E-value=1.3e-06 Score=93.24 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=66.6
Q ss_pred ccchhhhhccccccc-ceeecchhccccchhhHHHHHHHHHHHHHhhcCCCCChhhhhhhhhhHHHHHhh-hhhcCCCCh
Q psy14842 658 QSQHNIQMMSHTLTI-REVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAALSK-FCRQMPVSP 735 (858)
Q Consensus 658 qsQ~~I~~~s~~lp~-~~~r~~DvfL~EG~KVlyRvaLALLk~~~k~~~~~~~~~~~~~~k~~i~~~l~~-~~~~~~~sp 735 (858)
-.+|..+.+++.+|+ ...|+||+|+.||.++++|||+|+|+.+++.-.+.+ + -.++-+++++ +|.--..++
T Consensus 225 ~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~-~------~~~il~~l~~~~p~~~~~di 297 (331)
T 3qye_A 225 AAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHE-N------LETIVDFIKSTLPNLGLVQM 297 (331)
T ss_dssp SHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCC-S------HHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCC-C------HHHHHHHHHhhCCCCCHHHH
Confidence 357888899999999 889999999999999999999999999888443321 1 1233446666 333112578
Q ss_pred hHHHHHhhhccccchhHH
Q psy14842 736 RKVLKVAFGIRALGSTYI 753 (858)
Q Consensus 736 ~kLl~~Af~ir~~sr~ei 753 (858)
++++.+||+++.++....
T Consensus 298 ~~li~~A~~l~~s~~l~~ 315 (331)
T 3qye_A 298 EKTINQVFEMDIAKQLQA 315 (331)
T ss_dssp HHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhCCchHHHHH
Confidence 999999999999543333
No 12
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=97.56 E-value=3.4e-05 Score=82.34 Aligned_cols=76 Identities=22% Similarity=0.154 Sum_probs=62.9
Q ss_pred chhhhhccccccc-ceeecchhccccchhhHHHHHHHHHHHHHhhcCCCCChhhhhhhhhhHHHHHhhhhhcCCCChhHH
Q psy14842 660 QHNIQMMSHTLTI-REVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAALSKFCRQMPVSPRKV 738 (858)
Q Consensus 660 Q~~I~~~s~~lp~-~~~r~~DvfL~EG~KVlyRvaLALLk~~~k~~~~~~~~~~~~~~k~~i~~~l~~~~~~~~~sp~kL 738 (858)
+|..+.++..+|+ ...|+||+|+.||.+++++||+|+|+.+++.-.+. ....++-++++++|. .+++.+
T Consensus 206 rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll~~-------~~~~~il~~Lq~lp~---~di~~l 275 (294)
T 3qwl_A 206 LWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMAL-------NSAEKITKFLENIPQ---DSSDAI 275 (294)
T ss_dssp HHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHHHC-------CSHHHHHHHHTTCCS---TTHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHcCCc---ccHHHH
Confidence 8888999999999 99999999999999999999999999988833221 112345669999997 579999
Q ss_pred HHHhhhc
Q psy14842 739 LKVAFGI 745 (858)
Q Consensus 739 l~~Af~i 745 (858)
+.+|+.+
T Consensus 276 l~~A~~l 282 (294)
T 3qwl_A 276 VSKAIDL 282 (294)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999653
No 13
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=97.48 E-value=4.8e-05 Score=80.02 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=65.1
Q ss_pred ccchhhhhcccccc-c-ceeecchhccccchhhHHHHHHHHHHHHHhhcCCCCChhhhhhhhhhHHHHHhhhhhcCCCCh
Q psy14842 658 QSQHNIQMMSHTLT-I-REVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAALSKFCRQMPVSP 735 (858)
Q Consensus 658 qsQ~~I~~~s~~lp-~-~~~r~~DvfL~EG~KVlyRvaLALLk~~~k~~~~~~~~~~~~~~k~~i~~~l~~~~~~~~~sp 735 (858)
-.+|.++.+++.+| + ...|+||+|+.||.+++++||+|+++.+++.-.+.+.|- ..+..+++++|. .+++
T Consensus 204 ~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d~------~~l~~~l~~lp~--~~d~ 275 (292)
T 4hl4_A 204 ALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDM------ASVHHLLSQIPQ--DLPY 275 (292)
T ss_dssp GHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTSCCST------THHHHHHHSCCS--SCCH
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcCCCCH------HHHHHHHHhCCC--CCCH
Confidence 45788999999986 8 889999999999999999999999999877554432221 345568899997 6799
Q ss_pred hHHHHHhhhc
Q psy14842 736 RKVLKVAFGI 745 (858)
Q Consensus 736 ~kLl~~Af~i 745 (858)
++++.+|..+
T Consensus 276 ~~li~~A~~l 285 (292)
T 4hl4_A 276 ETLISRAGDL 285 (292)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999653
No 14
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=97.20 E-value=9.6e-05 Score=79.30 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=62.7
Q ss_pred cchhhhhccccccc-ceeecchhccccchh---hHHHHHHHHHHHHHhhcCCCCChhhhhhhhhhHHHHHhhhhhcC--C
Q psy14842 659 SQHNIQMMSHTLTI-REVRVLDCYLHEGIK---VLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAALSKFCRQM--P 732 (858)
Q Consensus 659 sQ~~I~~~s~~lp~-~~~r~~DvfL~EG~K---VlyRvaLALLk~~~k~~~~~~~~~~~~~~k~~i~~~l~~~~~~~--~ 732 (858)
.+|..+.+++.+|+ ...|+||+|+.||.+ .+++||+|+|+.+++.-... .| -.++-++++++|... .
T Consensus 247 ~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~-~d------~~~il~~L~~~p~~~~~~ 319 (345)
T 2qfz_A 247 FRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEE-KD------FQELLLFLQNLPTAHWDD 319 (345)
T ss_dssp HHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHC-CC------HHHHHHHHTSCSCTTCCH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhh-CC------HHHHHHHHHcCCCcCCch
Confidence 46888889999999 889999999999998 57999999999988732211 00 134455888888732 1
Q ss_pred CChhHHHHHhhhccc
Q psy14842 733 VSPRKVLKVAFGIRA 747 (858)
Q Consensus 733 ~sp~kLl~~Af~ir~ 747 (858)
.+++.|+.+||.++.
T Consensus 320 ~di~~ll~~A~~l~~ 334 (345)
T 2qfz_A 320 EDISLLLAEAYRLKF 334 (345)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 368999999988664
No 15
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=96.92 E-value=0.0002 Score=78.83 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=61.2
Q ss_pred cchhhhhccccccc-ceeecchhccccc----------------------------------------------------
Q psy14842 659 SQHNIQMMSHTLTI-REVRVLDCYLHEG---------------------------------------------------- 685 (858)
Q Consensus 659 sQ~~I~~~s~~lp~-~~~r~~DvfL~EG---------------------------------------------------- 685 (858)
.+|..+.+++.+|+ ...|+||+|+.||
T Consensus 234 ~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 313 (396)
T 1fkm_A 234 FRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAV 313 (396)
T ss_dssp HHHHHTTTGGGSCHHHHHHHHHHHHHHHC---------------------------------------------------
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccccccc
Confidence 46778889999999 8999999999999
Q ss_pred -----------hhhHHHHHHHHHHHHHhhcCCCCChhhhhhhhhhHHHHHhhhhhcC--CCChhHHHHHhhhcc
Q psy14842 686 -----------IKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAALSKFCRQM--PVSPRKVLKVAFGIR 746 (858)
Q Consensus 686 -----------~KVlyRvaLALLk~~~k~~~~~~~~~~~~~~k~~i~~~l~~~~~~~--~~sp~kLl~~Af~ir 746 (858)
.+.+++|++|+|+.+++.-.+. | -.++-++|+++|..- ..+++.++.+|+.++
T Consensus 314 ~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~--d------f~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~ 379 (396)
T 1fkm_A 314 EDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEM--D------FQETITFLQNPPTKDWTETDIEMLLSEAFIWQ 379 (396)
T ss_dssp ---------CHHHHHHHHHHHHHHHTHHHHTTC--C------HHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHH
T ss_pred ccchhccccchHHHHHHHHHHHHHHHHHHHHhc--C------HHHHHHHHhcCCCCCcccccHHHHHHHHHHHH
Confidence 4899999999999999844321 1 123445888887621 258999999997543
No 16
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=23.08 E-value=24 Score=29.66 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=17.4
Q ss_pred CCCcee-eecCceeecccccccch
Q psy14842 201 NQDSLL-ITDNRYYLSKISRDNVK 223 (858)
Q Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~~ 223 (858)
+||-|. .+|.||||.+|-+-|-.
T Consensus 7 GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 7 GQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCEEEEEecCCCEEeEEEEEEecC
Confidence 466665 79999999999875443
Done!