RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14842
(858 letters)
>gnl|CDD|214733 smart00584, TLDc, domain in TBC and LysM domain containing
proteins.
Length = 165
Score = 77.4 bits (191), Expect = 2e-16
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 798 SHTLTIRELFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVEQ-HEPTLLMIKTTN 856
S L+ L + S LP R Y LLY++ +HG SL T Y +VE PTLL+IK T+
Sbjct: 1 SSILSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTLLIIKDTD 60
Query: 857 NE 858
E
Sbjct: 61 GE 62
>gnl|CDD|219819 pfam08395, 7tm_7, 7tm Chemosensory receptor. This family includes
a number of gustatory and odorant receptors mainly from
insect species such as A. gambiae and D. melanogaster.
They are classified as G-protein-coupled receptors
(GPCRs), or seven-transmembrane receptors. They show
high sequence divergence, consistent with an ancient
origin for the family.
Length = 370
Score = 77.8 bits (192), Expect = 3e-15
Identities = 75/388 (19%), Positives = 151/388 (38%), Gaps = 46/388 (11%)
Query: 10 LKPLTSLLKIFSMLPLSSGRSNPRHFLSYLYSLGVFILLLANFTLSYIT-------METG 62
L+PL ++ + P R R L + +++L L + +
Sbjct: 1 LRPLLYYSQLLGLFPFEFDRRRGRLRWRRRLYLLLLLIILFLLVLLVLFLISFIRILYFF 60
Query: 63 SASSLSLLIRYLISGLSVIFVLVTLYKAHTNQSLFQEVIEEVIDLSQRNMRSNRNVVFYR 122
S+L ++ + L ++ VLV L + ++ E++ L +R +R F R
Sbjct: 61 RRSALLEVVYNIQLVLGLLTVLVILLSLLFQRRRLARLLNELLRLDRRLLRLGSRRNFRR 120
Query: 123 PNYRHLNAKIQFCCFTYLLVMFISFEILHSFLPNLTLFAVLNFLIPNLYSLLLSVEFYLL 182
+ L + LL++ + +L S L L +L +L+P L LL ++++LL
Sbjct: 121 --FNRL-LLLLLVLIILLLLVSLLGYLLLSQYFLLVLL-LLLYLLPYLVLNLLILQYFLL 176
Query: 183 LNFVQNRLEKMYQYFQNFNQDSLLITDNRYYLSKISRDNVKSELVFLLKTFYSIFNICAK 242
+ + L + + + LL S R+ L LL+ + + ++ +
Sbjct: 177 VLLIYRLLRLLNRQLK-----QLLRELRGLRESGQLRECCLLRLDKLLRLYRRLSDLVRE 231
Query: 243 INTMFSAQILLVIILTHVLLTCIAYVMTQAIITYLTDAAATLQYNVMYTNLYWFGFHWVM 302
+N F Q+LL+++ + +T + Y + Y + + ++ + W ++
Sbjct: 232 LNDCFGLQLLLILLYNFLNITVLIYWL------YSILLLGSSGFTLLV-FVLWLLIFLLL 284
Query: 303 IVLIVVPCENINTLKRNIMKTVHQIIIEDKMPNLTLEKRNIMKTVHQIIIEDKMPNLTLE 362
+VLIV C I+ E + + ++ + K L
Sbjct: 285 LVLIVYACNLISN-----------------------EAKKTALLLRRLNLRLKDSRLERS 321
Query: 363 LEMFLMDLEKYNIQFTAHGFFSLEYSLF 390
+E FL+ L ++FTA G F L+ SL
Sbjct: 322 IEKFLLQLLHQKLKFTACGLFDLDRSLL 349
Score = 30.5 bits (69), Expect = 4.0
Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 26/199 (13%)
Query: 7 HHLLKPLTSLLKIFSMLPLSSGRSNPRHFLSYLYSLGVFILLLANFTLSYITMETGSASS 66
L + L LL++ L R N R F L L V I+LL +L + +
Sbjct: 93 RRLARLLNELLRLDRRLLRLGSRRNFRRFNRLLLLLLVLIILLLLVSLLGYLLLSQYFLL 152
Query: 67 LSLLIRYLISGL---------SVIFVLVTLYKAHTNQSLFQEVIEEVIDLSQRNMR--SN 115
+ LL+ YL+ L ++ +L+ N+ L Q + E +R
Sbjct: 153 VLLLLLYLLPYLVLNLLILQYFLLVLLIYRLLRLLNRQLKQLLRELRGLRESGQLRECCL 212
Query: 116 RNVVFYRPNYRHL--NAKIQFCCFTYLLVM-------------FISFEILHSFLPNLTLF 160
+ YR L + CF L++ + + IL TL
Sbjct: 213 LRLDKLLRLYRRLSDLVRELNDCFGLQLLLILLYNFLNITVLIYWLYSILLLGSSGFTLL 272
Query: 161 AVLNFLIPNLYSLLLSVEF 179
+ +L+ L L+L V
Sbjct: 273 VFVLWLLIFLLLLVLIVYA 291
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identification of a
TBC domain in GYP6_YEAST and GYP7_YEAST, which are
GTPase activator proteins of yeast Ypt6 and Ypt7,
implies that these domains are GTPase activator proteins
of Rab-like small GTPases.
Length = 206
Score = 69.3 bits (170), Expect = 3e-13
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 4/154 (2%)
Query: 420 RLPYHLTRKGRSVTDRVVCVLGFACPDITYSPAIYPIAAMLLH-FMSEEECYNSLTSLVS 478
+ +G+ R++ PD+ Y + IAA LL + EEE + SL+
Sbjct: 52 HHFFFKNGEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLE 111
Query: 479 CKHRTFVTQTKLLYEVTWRTVMHISKKHVKSAAAHLTRHRQGSRVERIYMDW-MWWILQG 537
R F + + + KKH HL + G W + +
Sbjct: 112 YLLRDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKL--GLDPSLFASKWFLTLFARE 169
Query: 538 LPFNHLVRVLDCYLHEGIKVLYRVAMAILLLFHK 571
LP ++R+ D +L G L+RVA+AIL F K
Sbjct: 170 LPLETVLRLWDLFLEGGKFFLFRVALAILKRFRK 203
Score = 31.6 bits (72), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 663 IQMMSHTLTIREV-RVLDCYLHEGIKVLYRVAMAILLLFHK 702
+ + + L + V R+ D +L G L+RVA+AIL F K
Sbjct: 163 LTLFARELPLETVLRLWDLFLEGGKFFLFRVALAILKRFRK 203
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p. Probable
Rab-GAPs. Widespread domain present in Gyp6 and Gyp7,
thereby giving rise to the notion that it performs a
GTP-activator activity on Rab-like GTPases.
Length = 216
Score = 62.3 bits (152), Expect = 8e-11
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 445 PDITYSPAIYPIAAMLLHFM-SEEECYNSLTSLVSCKHRTFVTQTKLLYEVTWRTVMHIS 503
P++ Y + +AA LL M EE+ + L L+ F ++ + +
Sbjct: 87 PEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLV 146
Query: 504 KKHVKSAAAHLTRHRQGSRVERIYMDW-MWWILQGLPFNHLVRVLDCYLHEGIKVLYRVA 562
K++ HL G + W + + LP ++R+ D EG L+RVA
Sbjct: 147 KEYDPDLYKHLKDL--GITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVA 204
Query: 563 MAILLL 568
+A+L L
Sbjct: 205 LALLKL 210
Score = 29.2 bits (66), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 675 VRVLDCYLHEGIKVLYRVAMAILLL 699
+R+ D EG L+RVA+A+L L
Sbjct: 186 LRIWDVLFAEGSDFLFRVALALLKL 210
>gnl|CDD|219457 pfam07534, TLD, TLD. This domain is predicted to be an enzyme and
is often found associated with pfam01476.
Length = 136
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 824 LLYTTEEHGCSLTTFYYRVEQHEPTLLMIKTTNN 857
LLY++ HG SL TF + + PTLL++K +
Sbjct: 1 LLYSSSRHGSSLNTFLEKCDNKGPTLLIVKDDDG 34
>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn
finger [General function prediction only].
Length = 309
Score = 37.8 bits (88), Expect = 0.018
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 28 GRSNPRHFLSYLYSLGVFILLLANFTLSYITMETGSASSLSLLIRYLISGLSVIFVLVTL 87
G N R F +L + L++ T YI SL I +LI G S++ V+ +
Sbjct: 148 GFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICFLIFGCSLLGVVFFI 207
Query: 88 Y 88
Sbjct: 208 I 208
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function
prediction only].
Length = 496
Score = 36.7 bits (85), Expect = 0.058
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 445 PDITYSPAIYPIAAMLLHFM-SEEECYNSLTSLVSCKH-RTFVTQTKLLYEVTWRTVMHI 502
P++ Y + +AA LL + SEE+ + L L+ + + L + + +
Sbjct: 297 PEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKN--LSGL--HRDLKV 352
Query: 503 SKKHVKSAAAHLTRH--RQGSRVERIYMDWMWWILQG-LPFNHLVRVLDCYLHEGIKVLY 559
V+ L H R+G + W + P + +R+ DC EG +L+
Sbjct: 353 LDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLF 412
Query: 560 RVAMAILLLF 569
++A+AIL L
Sbjct: 413 QLALAILKLL 422
Score = 29.4 bits (66), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 675 VRVLDCYLHEGIKVLYRVAMAILLLF 700
+R+ DC EG +L+++A+AIL L
Sbjct: 397 LRIWDCLFLEGSSMLFQLALAILKLL 422
>gnl|CDD|227471 COG5142, OXR1, Oxidation resistance protein [DNA replication,
recombination, and repair].
Length = 212
Score = 32.9 bits (75), Expect = 0.49
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 795 QMMSHTLTIRELFTLWSWLPVRITMYQP-VLLYTTEEHGCSLTTFYYRVEQHE------P 847
++++ IRE LP R LLY+ E+G SL TFY ++E
Sbjct: 40 EIVTR---IRES------LPDRYKYSTSWRLLYSLFENGFSLRTFYESFGENEWPFRRVG 90
Query: 848 TLLMIKTTNNE 858
+L + + +
Sbjct: 91 FVLACRDKDGD 101
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 31.8 bits (72), Expect = 1.8
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 165 FLIPNLYSLLLSVEFYLLLNFVQNRLEKMYQYFQNFNQDSLLITDNRYYLSKISRDNVKS 224
IP L L+ + L + + F+ DS+L D Y SK + V
Sbjct: 374 VYIP-LSPYLVEI-----LKSAISVKNPKASVLRKFDFDSMLKPDTEYLRSKEYQMGVIE 427
Query: 225 ELVFLLKTFYSIF 237
E LL ++++F
Sbjct: 428 EASSLLLEYFALF 440
>gnl|CDD|172869 PRK14393, PRK14393, membrane protein; Provisional.
Length = 194
Score = 30.4 bits (69), Expect = 2.4
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 36 LSYLYSLGVFILLLANFTLSYITMETGSASSLSLLIRYLISG------LSVIFVLVTLYK 89
LS L +L +F+LL+A Y+++ + +A++ L+ G ++V+ L+ ++K
Sbjct: 119 LSVLGALAIFVLLVA--KWRYVSLGSITAAAAMPLLVAFTEGSPLLVAMTVVIALIVIFK 176
Query: 90 AHTN 93
N
Sbjct: 177 HREN 180
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.137 0.407
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 43,023,148
Number of extensions: 4284440
Number of successful extensions: 5160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5128
Number of HSP's successfully gapped: 92
Length of query: 858
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 753
Effective length of database: 6,280,432
Effective search space: 4729165296
Effective search space used: 4729165296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.1 bits)