RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14842
(858 letters)
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 66.4 bits (162), Expect = 9e-12
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 445 PDITYSPAIYPIAAMLLHFMSEEECYNSLTSLV-SCKHRTFVTQTKLLYEVTWRTVMHIS 503
PD+ Y + IAA+L+ + + + + ++L+ F L +
Sbjct: 149 PDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFF 208
Query: 504 KKHVKSAAAHLTRHRQGSRVERIYMDWMW--WILQ----GLPFNHLVRVLDCYLHEGIKV 557
++++ AH ++ + D WI LP + R+ D + +G +
Sbjct: 209 EENLPKLFAHFKKNN-------LTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEF 261
Query: 558 LYRVAMAILLLFHK 571
L+R A+ IL LF
Sbjct: 262 LFRTALGILKLFED 275
Score = 40.6 bits (95), Expect = 0.002
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 676 RVLDCYLHEGIKVLYRVAMAILLLFHK 702
R+ D + +G + L+R A+ IL LF
Sbjct: 249 RIWDVFCRDGEEFLFRTALGILKLFED 275
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 2e-10
Identities = 104/635 (16%), Positives = 183/635 (28%), Gaps = 226/635 (35%)
Query: 8 HLLKPLTSLLKIFSMLPLSSGRSNPRHFLSYLYSLGVFIL---LLANFTLSYITMETGSA 64
+ +PLT LS G + H L F + L F G A
Sbjct: 4 YSTRPLT----------LSHG--SLEH--VLLVPTASFFIASQLQEQFNKILPEPTEGFA 49
Query: 65 ------SSLSLLIRYLISGLSVIFVLVTLYKAH----TNQSLFQEVIEEVIDLSQRNMRS 114
+ L+ ++L G +V + + F +V+ + +
Sbjct: 50 ADDEPTTPAELVGKFL--G----YV------SSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 115 NRNVVFYRPNYRH-LNAKIQFCCFTYLLVMFISFEILHSFLPNLTLFAVLNFLIPNLY-S 172
++ H L AK+ T L+ + E++ ++ +T + S
Sbjct: 98 GNDI--------HALAAKLLQENDTTLVK---TKELIKNY---ITARIMAKRPFDKKSNS 143
Query: 173 LLL------SVEFYLLLN--------FVQNRLEKMYQYFQNFNQDSLLITDNRYYLSKIS 218
L + + + F L +YQ + D LI + LS++
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGD--LIKFSAETLSELI 199
Query: 219 RDNVKSELVFLLKTFYSIFNICAKINT---------MFSAQILLVII----LTHVLLTCI 265
R + +E K F NI + + S I +I L H ++T
Sbjct: 200 RTTLDAE-----KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 266 AYVMT---------------QAIITYLTDAAAT----LQYNV--MYTNLYWFGFHWVMIV 304
T Q ++T + A +V T L++ G
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR----- 309
Query: 305 LIVVPCENINTLKRNIMKTVHQIIIEDKMPNLTLEKRNIMKTVHQIIIEDKMP------- 357
C ++ PN +L + ++ + +P
Sbjct: 310 -----C--------------YEA-----YPNTSLPPSILEDSLEN---NEGVPSPMLSIS 342
Query: 358 NLTLE-LEMFLMDLEKY-------NI-------QFTAHGF-FSLEYSL---FRKALV--- 395
NLT E ++ ++ + I G SL Y L RKA
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL-YGLNLTLRKAKAPSG 401
Query: 396 MDNSK--FLELPEKPIM----LPPFVDSAHRLPYH---LTRKGRSVTDRVVCVLGFACPD 446
+D S+ F E K LP P+H L +D + L +
Sbjct: 402 LDQSRIPFSE--RKLKFSNRFLPVAS------PFHSHLLV----PASDLINKDL--VKNN 447
Query: 447 ITYSP---AIYPIAAMLLHFMSEE---ECYNSLT-SLVSCKHRTFVTQTKLLYEVTWRTV 499
++++ I P+ S++ +V C + V W T
Sbjct: 448 VSFNAKDIQI-PV----YDTFDGSDLRVLSGSISERIVDC----IIRLP-----VKWETT 493
Query: 500 MHISKKHV-------KSAAAHLT-RHRQGSRVERI 526
H+ S LT R++ G+ V I
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 53.5 bits (128), Expect = 3e-07
Identities = 88/546 (16%), Positives = 159/546 (29%), Gaps = 176/546 (32%)
Query: 377 FT-AHGFFSLEYS------LFRKALVMDNSKFL-ELPEKPIMLPPFVDSAHRLPYHLTRK 428
T +HG SLE+ F A + +F LPE D P L K
Sbjct: 9 LTLSHG--SLEHVLLVPTASFFIASQL-QEQFNKILPEPTEGFAA--DDEPTTPAELVGK 63
Query: 429 GRSVTDRVVCVLGF---ACPDITYSPAIYPIAAMLLHFMSEEECY------NSLTSLVSC 479
LG+ + L F E CY ++L + +
Sbjct: 64 ----------FLGYVSSLVEPSKVGQFDQVLNLCLTEF---ENCYLEGNDIHALAAKLLQ 110
Query: 480 KHRTFVTQTKLL----YEVTWRTVMHISKKHVKSAAAHLTRHRQGSRVERIYMDWMWWIL 535
++ T + +TK L KK SA L R ++ I
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKS-NSA---LFRAVGEGNA-QLVA-----IF 160
Query: 536 --QGLPFNHLVRVLDCYLHEGIKVLYR---------VAMAILLLFHKFSSSHNSD----- 579
QG D Y E ++ LY+ + + L ++ +++
Sbjct: 161 GGQGNT--------DDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 580 ------WMREIS-----DHGIEAALS-------------KFCRQMPVSPRKVLKVAFGIR 615
W+ S D+ + +S + + +P ++ G
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 616 ALGSTYIQRVFIKTEMTLKS-----KSVLS-----GSR-QLVRSKSNENLPTSQSQ---- 660
+ V I + +S + ++ G R + N +LP S +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY--EAYPNTSLPPSILEDSLE 329
Query: 661 HNIQMMSHTLTIR---------EVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDW 711
+N + S L+I V + +L G +V I L N
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV------EISL--------VNGAK 375
Query: 712 MREISDH-----GIEAALSKFC-------RQMPVSPRKVLKVAFGIRALG------STYI 753
+S G+ L K ++P S R K+ F R L S +
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER---KLKFSNRFLPVASPFHSHLL 432
Query: 754 QRVFIKTEMTLKSKSVLSGSRQLVRSKSNENLP---TSQSQHNIQMMSHTLT---IRELF 807
L +V ++ + +P T +++++S +++ + +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDI-------QIPVYDTF-DGSDLRVLSGSISERIVDCII 484
Query: 808 TL---W 810
L W
Sbjct: 485 RLPVKW 490
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 1e-09
Identities = 95/602 (15%), Positives = 189/602 (31%), Gaps = 150/602 (24%)
Query: 2 EENRIHHLLK---PLTSLLKIFSMLPLSSGRSNPRHF----LSYLYSLGVFILLLANFTL 54
EE I H++ ++ L++F L LS + F L Y F +
Sbjct: 49 EE--IDHIIMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINY----------KFLM 95
Query: 55 SYITMETGSASSLSLLIRYLISGLSVIFVLVTLY-KAHTNQSLFQEVIEEVIDLSQ--RN 111
S I E S ++ R I ++ ++ K + ++ ++ + L Q
Sbjct: 96 SPIKTEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYNVSR------LQPYLKLRQALLE 146
Query: 112 MRSNRNVVFYRPNYRH---------LNAKIQFCCFTYLLVMFISFEIL-----HSFLPNL 157
+R +NV+ + + C +Y + + F+I + P
Sbjct: 147 LRPAKNVLI------DGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 158 TLFAVLNF---LIPNLYSLL-LSVEFYLLLNFVQNRLEKMYQYFQNFNQDSLLITDNRYY 213
L + + PN S S L ++ +Q L ++ + ++ LL+
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYENCLLV------ 249
Query: 214 LSKISRDNVKSELVFLLKTFYSIFNICAKI--NTMFS--AQILLVIILTHVLLTCIAYVM 269
L NV++ + + FN+ KI T F L TH+ L + +
Sbjct: 250 L-----LNVQNAKAW------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 270 TQA-----IITYLTDAAATLQYNVMYTNLYWFGFHWVMI--VLIVVPCENINTLKRNIMK 322
T ++ YL L V+ TN +I + N N K
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 323 TVHQIIIEDKMPNLT-LEKRNIMKTVHQIIIED-KMPNLTLEL----------EMFLMDL 370
IIE + L E R + + + +P + L L + + L
Sbjct: 355 --LTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 371 EK---------------YNIQFTAHGFFSLEYSLFRKALVMDNSKFLELPEKPIMLPPFV 415
K +I EY+L R ++D+ + + ++PP++
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDSDDLIPPYL 469
Query: 416 DS--AHRLPYHLTRKGRSVTDRVVCVLGFACPDITYSPAIYP----IAAMLLHFMSEEEC 469
D + +HL +R + F ++ + + H +
Sbjct: 470 DQYFYSHIGHHLKNIEH--PER---MTLF--------RMVFLDFRFLEQKIRHDSTAWNA 516
Query: 470 YNSLTSLVS--CKHRTFVTQTKLLYEVTWRTVMHISKKHVKSAAAHLTRHRQGSRVERIY 527
S+ + + ++ ++ YE ++ K +L + +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI----EENLICSKYTDLLRIAL 572
Query: 528 MD 529
M
Sbjct: 573 MA 574
Score = 52.9 bits (126), Expect = 4e-07
Identities = 66/454 (14%), Positives = 134/454 (29%), Gaps = 126/454 (27%)
Query: 1 MEENRIHHLLKPLTSLLKIFSMLPLS--SGRSNPRHFLS---YLYSLGVFILLLAN---- 51
M + ++ + TS S + L S ++ R L Y L L+L N
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQNA 256
Query: 52 -----FTLS-YITMETGSASSLSLLIRYLISGLSVIFVLVTLYKAHTNQSLFQEVIEE-- 103
F LS I + T L + +S+ +TL +SL + ++
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRP 315
Query: 104 -------------VIDLSQRNMRSNRNVVFYRP-NYRHLNAKIQFCCFTYLLVMFISFEI 149
+ + ++R N++H+N ++ S +
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLA----TWDNWKHVNCD------KLTTIIESSLNV 365
Query: 150 LHS--FLPNLTLFAVL--NFLIPNLYSLLLSVEFYLLLNFVQNRLEKMYQYFQNFNQDSL 205
L + +V + IP ++LLS+ + + +++ + + + SL
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIP---TILLSL---IWFDVIKSDVMVVVNKLHKY---SL 416
Query: 206 LITDNRYYLSKISRDNVKSELVFLLKTFYSI-FNICAKINTMFSAQILLVIILTH-VLLT 263
+ + I SI + K+ ++ H ++
Sbjct: 417 VEKQPKESTISI----------------PSIYLELKVKLENEYAL---------HRSIVD 451
Query: 264 CIAYVMTQAIITYLTDAAATLQYNVMYTNLYWF-GFHWVMIVLIVVPCENINTLKRNIMK 322
Y T+ +D Y Y Y G H +K
Sbjct: 452 H--Y---NIPKTFDSDDL-IPPYLDQY--FYSHIGHH---------------------LK 482
Query: 323 TVHQIIIEDKMPNLTLEKRNIMKTVHQIIIEDKMPNLTLELEMFLMDLEKYNIQFTAHGF 382
+ + L+ R + + +I + N + + L L+ Y +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNTLQQLKFYKPYICDN-- 537
Query: 383 FSLEYSLFRKALVMDNSKFLELPEKPIMLPPFVD 416
+Y LV FL E+ ++ + D
Sbjct: 538 -DPKYE----RLVNAILDFLPKIEENLICSKYTD 566
Score = 51.4 bits (122), Expect = 1e-06
Identities = 83/642 (12%), Positives = 182/642 (28%), Gaps = 196/642 (30%)
Query: 124 NYRHLN---AKIQFCCFTYLLVMFISFEILHSFLPNLTLFAVLNFLIPNLYSLLLSVEF- 179
++ H++ + Q+ L V +F+ N V + S+L E
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVF------EDAFVDNFDCKDVQDMP----KSILSKEEID 52
Query: 180 ------------YLLLNFVQNRLEKMYQYFQNFNQDSLLITDNRYYLSKISRDNVKSELV 227
L + ++ E+M Q F + +L + ++ +S I + + ++
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 228 FLLKTFY--SIFNICAKINTMFSAQILLVIILTHVL--LTCIAYVMTQAII----TYLTD 279
+ ++N +++ + L L L V+ ++ T++
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-- 166
Query: 280 AAATLQYNVMYTNLYWFGFHWVMIVLIVVP---CENINTLKRNIMKTVHQIIIEDKMPNL 336
A + + F W+ + P E + L I D N+
Sbjct: 167 ALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNI 223
Query: 337 TLEKRNIMKTVHQIIIEDKMPN--LTLE-------LEMF--------------LMD---- 369
L +I + +++ N L L F + D
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 370 -------LEKYNIQFTAHGFFSLEYSLFRKALVMDNSKFLELPEKPIMLPPFVDS--AHR 420
L+ +++ T L K L + + +LP + + P S A
Sbjct: 284 ATTTHISLDHHSMTLTPDE--VKS--LLLKYL---DCRPQDLPREVLTTNPRRLSIIAES 336
Query: 421 LPYHLTR----------KGRSVTDRVVCVLGFACPDIT---Y-SPAIYP----IAAMLL- 461
+ L K ++ + + VL P + +++P I +LL
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 462 ---HFMSEEECYNSLTSLVS-----------------------CK-------HRTFVTQT 488
+ + + + L K HR+ V
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 489 KLLYEVTWRTVMHISKKHVKS-----AAAHLTRHRQGSRVE---RIYMDWMWWILQ---- 536
+ + ++ HL R+ +++D+ + L+
Sbjct: 454 NIPKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKIR 508
Query: 537 --GLPFNHLVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISD-----HGI 589
+N +L+ + L + + ++ + R ++ I
Sbjct: 509 HDSTAWNASGSILN-------------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 590 EAAL--SKFCRQMPVSPRKVLKVAF-----GIRALGSTYIQR 624
E L SK+ +L++A I +QR
Sbjct: 556 EENLICSKYTD--------LLRIALMAEDEAIFEEAHKQVQR 589
Score = 44.1 bits (103), Expect = 2e-04
Identities = 86/667 (12%), Positives = 183/667 (27%), Gaps = 255/667 (38%)
Query: 310 CENINTLKRNIMKT--VHQIIIEDKMPNLTLEKRNIMKTVHQIIIEDKMPNLTLELEMFL 367
C+++ + ++I+ + II+ + + + K + ++ F+
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMS---KDAVSGTLRLF-----WTLLSKQEEM---VQKFV 83
Query: 368 MDLEKYNIQFTAHGF---------FSLEYSLFRKALVMDNSKFLELPEKPIMLPPFVDSA 418
++ + N +F + Y R L DN F
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---------------- 127
Query: 419 HRLPYHLTRKGRSVTDRVVCVLGFACPDITYSPAIYPIAAMLLHFM-----SEEECYNSL 473
Y+++R + +L PA +L+ + + +
Sbjct: 128 ---KYNVSRL-QPYLKLRQALLEL-------RPAKN----VLIDGVLGSGKT------WV 166
Query: 474 TSLVSCKHRTFVTQTKLLYEVTWRTVMHISKKHVKSAAAHLTRHRQGSRVERIYMDWMWW 533
V C ++ Q K+ +++ W ++ K+ S
Sbjct: 167 ALDV-C--LSYKVQCKMDFKIFW-----LNLKNCNSPET--------------------- 197
Query: 534 ILQGLPFNHLVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDHGIEAAL 593
+L+ L L+ +D H + ++ L
Sbjct: 198 VLEML--QKLLYQIDPNWTS-------------RSDHSSNIKLRIHSIQA--------EL 234
Query: 594 SKFCRQMP----------VSPRKVLKVAFGIRALGSTYIQRVFIKTEMTLKSKSV---LS 640
+ + P V K AF + K +T + K V LS
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSC-----------KILLTTRFKQVTDFLS 282
Query: 641 GSRQLVRSKSNENLPTSQSQHNIQMMSHTLTIREVR-VLDCYLHEGIKVLYRVAMAI--- 696
+ S + S TLT EV+ +L YL + L R +
Sbjct: 283 AATTTHIS--------------LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 697 -LLLFHKFSSSHNSDW----------MREISDHGIEA-----------ALSKFCRQMPVS 734
L + + + W + I + + LS F +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI- 387
Query: 735 PRKVLKV---------------AFGIRAL-------GSTYIQRVFIKTEMTLKSKSVLSG 772
P +L + +L + I ++++ ++ L+++ L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-- 445
Query: 773 SRQLV------RSKSNENLPTSQS-----QH------NIQMMSHTLTIRELFTLWSWLPV 815
R +V ++ +++L H NI+ R +F + +L
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 816 RI--------------------TMYQPVLLYTTEEHG------CSLTTFYYRVEQHEPTL 849
+I Y+P Y + ++ F + + E L
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKP---YICDNDPKYERLVNAILDF---LPKIEENL 559
Query: 850 LMIKTTN 856
+ K T+
Sbjct: 560 ICSKYTD 566
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio}
Length = 167
Score = 56.4 bits (135), Expect = 2e-09
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 798 SHTLTIRELFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVEQHE-PTLLMIKTTN 856
S L ++ L LP R Y L ++T +HG S+ T Y ++ + P LL+IK ++
Sbjct: 5 SDLLEAEQIEKLAKHLPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSD 64
Query: 857 N 857
Sbjct: 65 G 65
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 57.9 bits (140), Expect = 5e-09
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 435 RVVCVLGFACPDITYSPAIYPIAAMLLHFMSEEECYNSLTSLVSCKH-RTFVTQTKLLYE 493
++ ++ Y + +A +LL MSEEE + L L+ R ++ +
Sbjct: 134 NILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQ 193
Query: 494 VTWRTVMHISKKHVKSAAAHLTRHRQGSRVERIYMDWMW----WILQ----GLPFNHLVR 545
+ + + + + HL H + W L P + R
Sbjct: 194 IQMYQLSRLLHDYHRDLYNHLEEHE---------IGPSLYAAPWFLTMFASQFPLGFVAR 244
Query: 546 VLDCYLHEGIKVLYRVAMAILLLFHK 571
V D +G +V+++VA+++L
Sbjct: 245 VFDMIFLQGTEVIFKVALSLLGSHKP 270
Score = 38.6 bits (90), Expect = 0.007
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 675 VRVLDCYLHEGIKVLYRVAMAILLLFHK 702
RV D +G +V+++VA+++L
Sbjct: 243 ARVFDMIFLQGTEVIFKVALSLLGSHKP 270
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 57.4 bits (139), Expect = 6e-09
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 444 CPDITYSPAIYPIAAMLLHFMSEEECYNSLTSLVSC-KHRTFVTQTKLLYEVTWRTVMHI 502
DI Y +AA+LL M EE+ + L ++ R + + +
Sbjct: 109 DEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERL 168
Query: 503 SKKHVKSAAAHLTRHRQGSRVERIYMDWMW----WILQ----GLPFNHLVRVLDCYLHEG 554
++ + +H + ++ W L P + ++D L EG
Sbjct: 169 MQEQLPDLHSHFSDLN---------LEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219
Query: 555 IKVLYRVAMAILLLFHK 571
+ +++ VA+A+L +
Sbjct: 220 LNIIFHVALALLKTSKE 236
Score = 40.1 bits (94), Expect = 0.002
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 675 VRVLDCYLHEGIKVLYRVAMAILLLFHK 702
++D L EG+ +++ VA+A+L +
Sbjct: 209 FHIIDLLLCEGLNIIFHVALALLKTSKE 236
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 48.1 bits (114), Expect = 6e-06
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 7/118 (5%)
Query: 453 IYPIAAMLLHFMSEEECYNSLTSLVSCKHRTFVTQTKLLYEVTWRTVMHISKKHVKSAAA 512
+ AM +CY V+ + + L + + +
Sbjct: 136 LAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQYL----NLEDGRLLT 191
Query: 513 HLTRHRQGSRVERIYMDWMWWILQG-LPFNHLVRVLDCYLHEGIKVLYRVAMAILLLF 569
HL + + Y W G LP + L RV D + K+L VA+ ILL F
Sbjct: 192 HLRMC--SAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTF 247
Score = 30.8 bits (69), Expect = 2.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 675 VRVLDCYLHEGIKVLYRVAMAILLLF 700
RV D + K+L VA+ ILL F
Sbjct: 222 QRVWDKVVSGSCKILVFVAVEILLTF 247
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG,
protein structure initiative, midwest center for STRU
genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Length = 131
Score = 33.5 bits (77), Expect = 0.079
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 184 NFVQNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
N +Q RLE+ D+LL+T N YYL+
Sbjct: 2 NAMQRRLERFDAKLVQSGLDALLVTGQNNIYYLT 35
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.00A {Streptococcus pyogenes}
Length = 132
Score = 33.5 bits (77), Expect = 0.092
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 184 NFVQNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
F++ RL + ++LL+T N YYL+
Sbjct: 6 GFLEQRLGHCLRQMAEKGLEALLVTHLTNSYYLT 39
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 33.7 bits (78), Expect = 0.26
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 188 NRLEKMYQYFQNFNQDSLLITD--NRYYLSKISRDN 221
++E++ F D +L+T+ +R Y++ +
Sbjct: 5 EKIERLRSAFDEAGIDGILLTNEHSRRYMANFTGTA 40
>2i71_A Hypothetical protein; structural genomics, APC6294, PSI-2, protein
structure initia midwest center for structural genomics,
MCSG; 1.70A {Sulfolobus solfataricus} SCOP: e.72.1.1
Length = 400
Score = 33.7 bits (76), Expect = 0.30
Identities = 24/208 (11%), Positives = 68/208 (32%), Gaps = 16/208 (7%)
Query: 63 SASSLSLLIRYLISGLSVIFVLVTLYKAHTNQ-SLFQEVIEEVIDLSQRNMRSNRNVV-- 119
S S+ L L +V+ + +++ + + + ++ E +I S+ ++ + + V
Sbjct: 50 SNVSVLALRDLLKVDKTVVILGISVADVYNCKYADYRSCKECIIQNSKNDLGISESYVVA 109
Query: 120 -----FYRPNYRHLNAKIQFCCFTYLL---VMFISFEILH--SFLPNLTLFAVLNFLIPN 169
++ H I + L + + + H +++ L A+ +
Sbjct: 110 PNVYQKFKGKPDHYFTYIYYHSLRILEKEGINEVFIDTTHGINYMGVLAKEAIQLAVSAY 169
Query: 170 LYSLLLSVEFYLLLNFVQNRLEKMYQYFQNFNQDSLLITDNRYYLSKISRDNVKSELVFL 229
V+ L + + + K ++ + L ++ + + F
Sbjct: 170 AAKSEKEVKVSL---YNSDPVGKDVSDTVKLHEIEAIKISPLSGLKYVTYQILNKDKNFF 226
Query: 230 LKTFYSIFNICAKINTMFSAQILLVIIL 257
K F N + T + + +
Sbjct: 227 NKIFSDSVNAIPRFATALDNGLFIYLSE 254
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics,
midwest center for structu genomics, hydrolase; HET:
MSE; 2.15A {Corynebacterium diphtheriae}
Length = 135
Score = 32.0 bits (73), Expect = 0.34
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 184 NFVQNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
R + D++L+T + YLS
Sbjct: 8 TRFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLS 41
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 33.4 bits (77), Expect = 0.34
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 187 QNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
R +++ + B D++L T N Y S
Sbjct: 25 TRRZBRLRAWMAKSBIDAVLFTSYHNINYYS 55
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 32.9 bits (76), Expect = 0.37
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 187 QNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
+++K+ ++ + D++LI N YY+S
Sbjct: 5 NEKVKKIIEFMDKNSIDAVLIAKNPNVYYIS 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.48
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 10/31 (32%)
Query: 2 EENRIHHLLKPLTSLLKIFSMLPLSSGRSNP 32
E+ + K L + LK+++ S+ P
Sbjct: 18 EKQAL----KKLQASLKLYA--DDSA----P 38
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 32.6 bits (75), Expect = 0.52
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 189 RLEKMYQYFQNFNQDSLLITD--NRYYLSKISRDNVKSELVFLL 230
RLEK D LI+ N YYL+ + V L L
Sbjct: 2 RLEKFIHLLGERGFDGALISPGTNLYYLTGLRLHEVGERLAILA 45
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 32.3 bits (74), Expect = 0.69
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 187 QNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
NR ++ + N D+ + T N Y S
Sbjct: 24 ANRQARLRAHLAAENIDAAIFTSYHNINYYS 54
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 31.9 bits (72), Expect = 1.1
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 187 QNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
+ R ++ + LL+ D N Y +
Sbjct: 80 RFRHRRLTDHVVARGYAGLLMFDPLNIRYAT 110
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 31.1 bits (71), Expect = 1.6
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 187 QNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
RL + L+IT + YL
Sbjct: 16 ARRLAAAAAATEQAGLAGLVITPGYDLRYLI 46
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall
peptidase, creatinase/prolidase N-terminal domain,
PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Length = 140
Score = 28.9 bits (65), Expect = 3.1
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 187 QNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
+LE++ Q+ + +++ YL+
Sbjct: 3 MTKLEQIQQWTAQHHASMTYLSNPKTIEYLT 33
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 29.6 bits (67), Expect = 3.1
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 559 YRVAMAILLLF---HKFSSSHNSDWMREISDHG 588
+R AM LL+F + S + +WM ++ +
Sbjct: 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 137
Score = 29.6 bits (67), Expect = 3.1
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 690 YRVAMAILLLF---HKFSSSHNSDWMREISDHG 719
+R AM LL+F + S + +WM ++ +
Sbjct: 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 137
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 29.5 bits (67), Expect = 3.8
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 559 YRVAMAILLLF---HKFSSSHNSDWMREISDHG 588
+R AM LLLF ++ S + +W+ ++ H
Sbjct: 91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Score = 29.5 bits (67), Expect = 3.8
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 690 YRVAMAILLLF---HKFSSSHNSDWMREISDHG 719
+R AM LLLF ++ S + +W+ ++ H
Sbjct: 91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid,
borellia burgdorferi, plasmid partition protein, iodide;
2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 29.5 bits (67), Expect = 3.8
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 65 SSLSLLIRYLISGLSVIFVLVTLYKAHTNQSLFQEVIEEVIDLSQRNM--RSNRNV-VFY 121
+ +R L L + ++ K T+++ I + D + R + N +
Sbjct: 185 DLFNFFVRKLNLFLPIFLIITRFKKNRTHKT--LFEILKTKDRFLGTISEREDLNRRIAE 242
Query: 122 RPNY 125
N+
Sbjct: 243 NNNF 246
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae}
PDB: 3peb_A*
Length = 132
Score = 28.5 bits (64), Expect = 4.1
Identities = 4/30 (13%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 188 NRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
++L ++ + + + + +D YL+
Sbjct: 3 SKLNRIRHHLHSVQAELAVFSDPVTVNYLT 32
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G
midwest center for structural genomics; 1.85A
{Streptococcus pyogenes m1 gas}
Length = 132
Score = 28.6 bits (64), Expect = 4.8
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 187 QNRLEKMYQYFQNFNQDSLLITD--NRYYLS 215
+L+++ Y + + +D YL+
Sbjct: 2 NAKLDQIRLYLDQKGAELAIFSDPVTINYLT 32
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 29.5 bits (66), Expect = 5.0
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 464 MSEEECYNSLTSLVSCKHRTFV-TQTKLLYEVTWRTVMHISKKHVKSAAAHLTRHRQGSR 522
E + Y ++ L+ + Q + +V + + + + + HL +H R
Sbjct: 186 NIEADTYWCMSKLLDGIQDNYTFAQPGIQMKV--KMLEELVSRIDEQVHRHLDQH--EVR 241
Query: 523 VERIYMDWMW-WILQGLPFNHLVRVLDCYLHEGIK---VLYRVAMAILLLFHK 571
+ WM +++ +P +R+ D Y E V A L+ + K
Sbjct: 242 YLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRK 294
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 29.1 bits (66), Expect = 5.8
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 188 NRLEKMYQYFQNFNQDSLLITD-------NRYYLSKISRDN 221
+R E++ Q D+ LI + + Y S +
Sbjct: 2 DRSERLIQLISEEGIDAFLIMNIENSARASSVYFSGFTGSF 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 28.7 bits (65), Expect = 6.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 559 YRVAMAILLLF---HKFSSSHNSDWMREISDHG 588
YR A A+LLL+ +K S + W+ EI ++
Sbjct: 81 YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA 113
Score = 28.7 bits (65), Expect = 6.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 690 YRVAMAILLLF---HKFSSSHNSDWMREISDHG 719
YR A A+LLL+ +K S + W+ EI ++
Sbjct: 81 YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA 113
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 28.3 bits (64), Expect = 8.2
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 559 YRVAMAILLLF---HKFSSSHNSDWMREISDHG 588
YR AM I+L++ ++ S + +W+R I +H
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 110
Score = 28.3 bits (64), Expect = 8.2
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 690 YRVAMAILLLF---HKFSSSHNSDWMREISDHG 719
YR AM I+L++ ++ S + +W+R I +H
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.137 0.407
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,629,413
Number of extensions: 754670
Number of successful extensions: 2085
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2038
Number of HSP's successfully gapped: 71
Length of query: 858
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 756
Effective length of database: 3,853,851
Effective search space: 2913511356
Effective search space used: 2913511356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (27.6 bits)