RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14842
         (858 letters)



>d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 377

 Score = 32.2 bits (73), Expect = 0.26
 Identities = 25/216 (11%), Positives = 66/216 (30%), Gaps = 35/216 (16%)

Query: 63  SASSLSLLIRYLISGLSVIFVLVTLYKAHTNQ-SLFQEVIEEVIDLSQRNMRSNRNVV-- 119
           S  S+  L   L    +V+ + +++   +  + + ++   E +I  S+ ++  + + V  
Sbjct: 29  SNVSVLALRDLLKVDKTVVILGISVADVYNCKYADYRSCKECIIQNSKNDLGISESYVVA 88

Query: 120 -----FYRPNYRHLNAKIQFCCFTYLLVMFISFEIL-----HSFLPNLTLFAVLNFLIPN 169
                 ++    H    I +     L    I+   +      +++  L   A+   +   
Sbjct: 89  PNVYQKFKGKPDHYFTYIYYHSLRILEKEGINEVFIDTTHGINYMGVLAKEAIQLAV--- 145

Query: 170 LYSLLLSVEFYLLLNFVQNRLEKMY-QYFQNFNQDSLLIT-------DNRYYLSKISRDN 221
                     Y   +  + ++             D++ +             L  ++   
Sbjct: 146 --------SAYAAKSEKEVKVSLYNSDPVGKDVSDTVKLHEIEAIKISPLSGLKYVTYQI 197

Query: 222 VKSELVFLLKTFYSIFNICAKINTMFSAQILLVIIL 257
           +  +  F  K F    N    I    +A    + I 
Sbjct: 198 LNKDKNFFNKIFSDSVN---AIPRFATALDNGLFIY 230


>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
          Length = 155

 Score = 27.9 bits (62), Expect = 2.9
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 414 FVDSAHRLPYHLTRKGRSVTDR----VVCVLGFACPDITYSPAIYPIAAMLLHFMSEEEC 469
            V SAHR P ++     +  +R    ++   G A        A   +  + +   S+   
Sbjct: 34  KVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALN 93

Query: 470 -YNSLTSLVSC 479
             +SL S+V  
Sbjct: 94  GLDSLLSIVQM 104


>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 27.1 bits (59), Expect = 7.5
 Identities = 5/57 (8%), Positives = 16/57 (28%)

Query: 530 WMWWILQGLPFNHLVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISD 586
               +++      ++R+ D YL E  + +               +         ++ 
Sbjct: 42  MNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTP 98


>d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger
           [TaxId: 5061]}
          Length = 261

 Score = 27.1 bits (59), Expect = 8.3
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 529 DWMWWILQGL-PFNHLVRVLDCYLHEGIKVLYRVAMAILLLFHKFSSSHNSDWMREISDH 587
           +        L PF+ L +  DC +H G  + +      +    K  +S   D+   ++ H
Sbjct: 73  NLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGH 132

Query: 588 GIEAALSKFC 597
            + A+++   
Sbjct: 133 SLGASMAALT 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,085,086
Number of extensions: 143112
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 13
Length of query: 858
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 765
Effective length of database: 1,130,706
Effective search space: 864990090
Effective search space used: 864990090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.9 bits)