Query psy14846
Match_columns 615
No_of_seqs 194 out of 1005
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 22:15:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2285|consensus 100.0 1.3E-89 2.8E-94 686.0 57.2 601 3-611 6-609 (777)
2 KOG2166|consensus 100.0 2.6E-90 5.7E-95 764.4 52.2 568 2-615 2-586 (725)
3 PF00888 Cullin: Cullin family 100.0 8.8E-89 1.9E-93 768.7 54.5 537 14-615 1-540 (588)
4 COG5647 Cullin, a subunit of E 100.0 1E-87 2.2E-92 711.5 48.9 576 5-615 15-628 (773)
5 KOG2284|consensus 100.0 2.3E-87 5E-92 663.9 40.4 561 4-615 5-584 (728)
6 KOG2167|consensus 100.0 7.1E-78 1.5E-82 622.6 38.2 509 55-615 1-518 (661)
7 smart00182 CULLIN Cullin. 100.0 4E-34 8.7E-39 261.9 18.0 141 442-584 1-142 (142)
8 KOG2165|consensus 99.9 2.7E-22 5.9E-27 213.0 15.7 176 437-615 443-622 (765)
9 PF08539 HbrB: HbrB-like; Int 97.4 0.0024 5.2E-08 58.9 12.2 147 7-160 2-157 (158)
10 KOG2167|consensus 96.2 0.077 1.7E-06 57.6 13.6 200 12-244 112-324 (661)
11 PF08318 COG4: COG4 transport 56.6 79 0.0017 33.1 10.0 170 277-467 12-215 (331)
12 PF08328 ASL_C: Adenylosuccina 51.1 9.8 0.00021 32.9 1.7 30 8-38 46-75 (115)
13 PF04001 Vhr1: Transcription f 50.5 1.1E+02 0.0023 25.1 7.3 55 451-505 22-86 (95)
14 PRK13713 conjugal transfer pro 30.8 96 0.0021 26.9 4.6 42 155-202 2-44 (118)
15 PF10163 EnY2: Transcription f 28.6 1.6E+02 0.0035 24.1 5.5 52 12-65 30-82 (86)
16 smart00762 Cog4 COG4 transport 25.3 4.5E+02 0.0098 27.3 9.6 85 278-362 13-109 (324)
17 KOG0412|consensus 24.8 5.1E+02 0.011 29.9 10.0 82 274-355 192-280 (773)
18 PF07393 Sec10: Exocyst comple 22.9 1.2E+03 0.027 27.0 14.3 187 197-416 103-313 (710)
19 PF07516 SecA_SW: SecA Wing an 22.6 4.7E+02 0.01 25.2 8.6 90 15-104 62-170 (214)
20 PF02847 MA3: MA3 domain; Int 20.8 1.2E+02 0.0027 25.7 3.7 53 353-418 58-110 (113)
21 PF05261 Tra_M: TraM protein, 20.6 1.3E+02 0.0028 26.5 3.5 38 154-191 8-46 (127)
22 smart00544 MA3 Domain in DAP-5 20.3 2E+02 0.0044 24.3 5.0 53 353-418 58-110 (113)
No 1
>KOG2285|consensus
Probab=100.00 E-value=1.3e-89 Score=686.00 Aligned_cols=601 Identities=66% Similarity=1.052 Sum_probs=557.6
Q ss_pred CCCCCCCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcccchh
Q psy14846 3 KDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQ 82 (615)
Q Consensus 3 ~~~~~~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~~~~~ 82 (615)
|.....-||+.|+..++.+.++++++.+++..|++||.+||..|.+.++++.++|+.++..|.+++.+...++.+..++.
T Consensus 6 ~~r~r~qFee~W~~~rpIVlkLLrQ~sVt~~~WqDLF~~Vh~vclWddkGpaKI~d~L~~dI~efi~qAq~rv~s~q~d~ 85 (777)
T KOG2285|consen 6 GKRDRDQFEEEWSKARPIVLKLLRQKSVTPAAWQDLFYHVHKVCLWDDKGPAKIRDILTRDINEFIHQAQKRVRSLQTDG 85 (777)
T ss_pred cccchhhhhhhccccchHHHHHHhhccCCHHHHHHHHhhheeeeeecCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455689999999999999999999999999999999999999998888999999999999999998877777666678
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHHhhHHHHHHHH
Q psy14846 83 ALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSA 162 (615)
Q Consensus 83 ~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~~i~~~l~~~l 162 (615)
.+|..|...|.+|..++.++..-|..|+..-..+.++ .++.+++..+|+.+.++.|.++||..|+++|..+.
T Consensus 86 aLL~~YIvEWrkFftQ~niLPlPF~qle~s~~gk~gs--------~kk~~~eds~vRklMLd~WNe~IF~nIk~rLq~sA 157 (777)
T KOG2285|consen 86 ALLIGYIVEWRKFFTQANILPLPFKQLEESQAGKRGS--------VKKTPTEDSSVRKLMLDKWNEIIFMNIKERLQVSA 157 (777)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCcHHHHHHHhhcccCC--------CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999886554422 23333355899999999999999999999999999
Q ss_pred HHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy14846 163 MKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLH 242 (615)
Q Consensus 163 l~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~ 242 (615)
+.++..+|+|+.+|.+++.++.++||.|+.++++++.+|++.||..||+.|.+||+..+..+++++++-+|+++|+..++
T Consensus 158 mklVhaER~G~a~DaQlViGvRESyVnL~snaEDkL~iYR~nFE~ayl~~T~efYr~~~~~~lqenGVl~YMkYAD~KL~ 237 (777)
T KOG2285|consen 158 MKLVHAERDGNAIDAQLVIGVRESYVNLNSNAEDKLLIYRQNFERAYLEQTTEFYRKICGNLLQENGVLEYMKYADKKLE 237 (777)
T ss_pred HHHHHHHhccchhhhhhhhhhHHhHhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCc-ccHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHHHHHHH
Q psy14846 243 EEELRACKYLESS-SSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNA 321 (615)
Q Consensus 243 eE~~r~~~~L~~~-~t~~~l~~~l~~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~ 321 (615)
||+.|+.+||... .|..++++.+..+||..|.+.|+.+|..+|...+.+-|++||+|+.++..|++++.+.+..||...
T Consensus 238 EEe~RAkRYLE~~~~s~~~lme~~VnaLv~sf~~tIlAEC~~lI~~~etErL~lmfrLmdrv~~Giepmlkdl~~HI~sa 317 (777)
T KOG2285|consen 238 EEEQRAKRYLEMNSPSSGKLMEKAVNALVESFEDTILAECSKLIASKETERLQLMFRLMDRVRSGIEPMLKDLDTHIRSA 317 (777)
T ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhh
Confidence 9999999998542 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCccccccccCccccC-CCCCCCC
Q psy14846 322 GLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCT-GIKTLPE 400 (615)
Q Consensus 322 g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~~~~~~~~~-~~~~~~~ 400 (615)
|...+....+.++.|+.+||+.|+.++++|..+|.+.|+.|+.|..|-+.||+.++|+..+|..++|+++.+ |-++.+.
T Consensus 318 GLaDM~~aaE~ittDsEkYVeqLL~lFnkFS~LVreaF~DDpRfLTARDkAfkaVVNDssiFK~Elp~~~kgrglkt~pE 397 (777)
T KOG2285|consen 318 GLADMRNAAENITTDSEKYVEQLLLLFNKFSSLVREAFCDDPRFLTARDKAFKAVVNDSSIFKTELPNSKKGRGLKTAPE 397 (777)
T ss_pred hHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHhhcchhhhhhhccchhcCCccccCcc
Confidence 999998888889999999999999999999999999999999999999999999999999999999876532 1234567
Q ss_pred CchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHH
Q psy14846 401 SKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLR 480 (615)
Q Consensus 401 ~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk 480 (615)
.++||+||.|||.+||+.+.+|.++.+|++.+|++++-+++|+.+||+|+.|++.||++||+...|++.+.|..|+..|+
T Consensus 398 SKCpELLANYCDmLLRkTpLSKkLTSEeIdakL~~VLLVLKYV~NKDVFMRyHkaHLtRRLIL~~SADsEkEE~mVewLR 477 (777)
T KOG2285|consen 398 SKCPELLANYCDMLLRKTPLSKKLTSEEIDAKLNQVLLVLKYVENKDVFMRYHKAHLTRRLILEMSADSEKEEMMVEWLR 477 (777)
T ss_pred cccHHHHHHHHHHHHhcCccchhccHHHHHHHHHhHhhHhHhhcccHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC-CCCCceEEEEeecCCCCCCCCCccccCChhHHHhHHHHHHH
Q psy14846 481 DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKG-SIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDF 559 (615)
Q Consensus 481 ~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~-~~~~~~~~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~~ 559 (615)
+||+|++|++||..||+|++.|++++++|+...+..+. ++...+++.||..|.|...+....+.||.+|+..+-.-+.|
T Consensus 478 EvGMPaDyVNkLaRMfQDIkvseDlN~~Fk~~~~~~~~~~~aDsiNiKiLNaGAW~R~SErv~vSLP~ELED~iPdveEf 557 (777)
T KOG2285|consen 478 EVGMPADYVNKLARMFQDIKVSEDLNSSFKKALTGTNNNSIADSINIKILNAGAWGRGSERVRVSLPRELEDFIPDVEEF 557 (777)
T ss_pred HcCCcHHHHHHHHHHHhhccccHHHHHHHHHHHhCCCCCCcccceeeeeecccccccccceEEEeCchhHHHhCccHHHH
Confidence 99999999999999999999999999999998765432 33457899999999999887677899999999999999999
Q ss_pred HhccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCC
Q psy14846 560 YKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDR 611 (615)
Q Consensus 560 Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~ 611 (615)
|+.+|+||+|+|.|+++.++|++..+.|.|.+.|+++||+||.+||+..--+
T Consensus 558 ykk~hsgrkl~w~h~msNG~itf~n~~GryDLevTTFQmAVLFawNqR~hdK 609 (777)
T KOG2285|consen 558 YKKKHSGRKLQWYHHMSNGTITFVNNFGRYDLEVTTFQMAVLFAWNQRAHDK 609 (777)
T ss_pred HhcccCccchhhhhhccCCeeEeecccccceeeeehhhHHHHHHhccccccc
Confidence 9999999999999999999999988889999999999999999999854433
No 2
>KOG2166|consensus
Probab=100.00 E-value=2.6e-90 Score=764.44 Aligned_cols=568 Identities=28% Similarity=0.511 Sum_probs=507.3
Q ss_pred CCCCCCCCHHhhhhHHHHHHHHHHhcC------CCChhhHHHHHHHHHHhhccCCCCh----hHHHHHHHHHHHHHHHHH
Q psy14846 2 LKDKGTQTFEDKWPSMRPIVLKLLQQE------PVSQNEWQNLFYAVHVVCLWDEKGP----SKIVDALKEDIMNFIRHA 71 (615)
Q Consensus 2 ~~~~~~~~fe~~W~~L~~ai~~I~~~~------~~~~~s~~~lY~~vy~lc~~~~~~~----~~LY~~l~~~i~~~l~~~ 71 (615)
+..+.+.+++..|..+++++..+.+.. .++..+|+++|+++|++|++ ++| +.||+++++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~--k~~~~~~~~lY~~l~~~~~~yl~~~ 79 (725)
T KOG2166|consen 2 MMAPKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQ--KPPHDYSQQLYDKYREVIEEYLIQT 79 (725)
T ss_pred CccccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhc--cCCCcchHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888766543 57889999999999999999 666 999999999999999998
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHH-HHhhhhhH
Q psy14846 72 QQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLM-LDSWNQSI 150 (615)
Q Consensus 72 ~~~l~~~~~~~~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~-l~~f~~~v 150 (615)
+........++.+|..+.+.|.+|+.++.+++++|+||||+||.+. ..+ .++++++ +.+|+..+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~----------~~~-----~~v~~~~~l~l~r~~v 144 (725)
T KOG2166|consen 80 VLPALREKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQS----------RRK-----LPTLNEVGLTCFRDLV 144 (725)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh----------cCC-----CCcccceeeEEeehHH
Confidence 7555444457889999999999999999999999999999999864 111 3444444 77777766
Q ss_pred HH-hhHHHHHHHHHHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy14846 151 FN-DIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNG 229 (615)
Q Consensus 151 ~~-~i~~~l~~~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~ 229 (615)
.. ++.++++++++.+|..+|.|+.||+..|++++++++.+|.+. +.+|.+.||++|++.|..||..++..|+...+
T Consensus 145 ~~~~~~~~~~~all~lI~~eR~ge~in~~~i~~~~~~~~~lg~~~---~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~ 221 (725)
T KOG2166|consen 145 YKFEMQSEAIDALLALIHKEREGEQIDRELIRNVIDVYVELGMGE---LSFYEEDFERKFLQDTASYYSEEASEWLEENS 221 (725)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccHHHHhhHHHHHHhccccc---hhHHHHHhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 65 699999999999999999999999999999999999999754 67999999999999999999999999999889
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHH----HhhHHHHhcCchHHHHHHHHHHHhhhC
Q psy14846 230 VESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTIL----AECPKMIKMNETLKLELMMKLLDRIKD 305 (615)
Q Consensus 230 ~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il----~~~~~ll~~~~~~~L~~ly~L~~~~~~ 305 (615)
+.+|+.+|+.++.+|..|+..|++. .+.+++...++.+++..|.+.++ +|+..|+.+++.++|.+||+++++++.
T Consensus 222 ~~~yl~k~e~~l~~e~~r~~~yl~~-~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~ 300 (725)
T KOG2166|consen 222 CLDYLKKIEECLKEERERVTHYLHS-STEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILP 300 (725)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh-cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccc
Confidence 9999999999999999999998887 67777777777777777766665 479999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCcccccc
Q psy14846 306 GITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKL 385 (615)
Q Consensus 306 ~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~ 385 (615)
|++.+++.++.|+..+|...+....+....+|..+|+.+++++++|..++..||.+|..|.++++.||..|+|.+..
T Consensus 301 gl~~l~~~~~~~~~~eg~~l~~r~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~f~~d~~f~~~ld~a~~~fin~n~~--- 377 (725)
T KOG2166|consen 301 GLEPLASVFKQHVREEGNALVARPAETAATNPVEYVQGLLELHDKYKVLVKECFANDTLFKKALDAAFEEFINKNVA--- 377 (725)
T ss_pred cchhHHHHHHHHHHhhHHHHhhhhhhhcccchHHHHhccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHcccCC---
Confidence 99999999999999999776655444323789999999999999999999999999999999999999999998631
Q ss_pred ccCccccCCCCCCCCCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCC
Q psy14846 386 ELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDT 465 (615)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~ 465 (615)
.+||+||+|||.++|++ .++.++++++..+++++.+|+|+.|||+|+++|+++||||||+++
T Consensus 378 ----------------~~~E~la~y~D~~lkk~--~k~~~e~~ie~~l~~v~~l~~yisdKdvF~~~Ykk~lakRLl~~~ 439 (725)
T KOG2166|consen 378 ----------------TSAELLATYCDDILKKG--SKKLSDEAIEDTLEKVVKLLKYISDKDVFAEFYKKVLARRLLFDR 439 (725)
T ss_pred ----------------CcHHHHHHHhHHHhccc--ccCCchhHHHhHhhcceeeeeeccHHHHHHHHHHHHHHHHHhhcC
Confidence 12799999999999996 477789999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCCCCCCcccc
Q psy14846 466 SADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVS 544 (615)
Q Consensus 466 s~s~~~E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~Vlt~~~WP~~~~~~~~~ 544 (615)
|.|+++|+.||++|+ +||+ +||+||++|++|+..|++++..|.++ .+.....+++|.|.|||+|+||.++ ..++.
T Consensus 440 S~sdd~E~~mIsklk~~~g~--~~T~kL~~Mf~D~~~s~~l~~~F~~~-~~~~~~~~~df~v~VLt~g~WP~~~-~~~~~ 515 (725)
T KOG2166|consen 440 SASDDHEKSLITKLKNLCGE--QFTSKLEGMFTDLTLSRELQTAFADY-ANYSANLGIDFTVTVLTTGFWPSYK-STDIN 515 (725)
T ss_pred ccchHHHHHHHHHHHHHHHh--HHHHHHHhhcccHHHHHHHHHHHHhh-hchhccCCCceeEEEeecCCcCCcc-CCCCC
Confidence 999999999999999 9996 99999999999999999999999976 2222224689999999999999974 55699
Q ss_pred CChhHHHhHHHHHHHHhccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCCcCCC
Q psy14846 545 LPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL 615 (615)
Q Consensus 545 lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~~~el 615 (615)
||++|..+++.|..||.++|+||+|+|++++|.|+|.+.|.+++|+|+||++||||||+||+.+.+|++||
T Consensus 516 LP~el~~~~e~F~~~Y~~kh~gR~L~w~~~l~~~ei~~~~~~~~~~l~vst~Qm~VLlLFN~~d~lt~~eI 586 (725)
T KOG2166|consen 516 LPSEMSDCVEMFKGFYATKHNGRRLTWIYSLGTGEINGKFDKKTVELQVSTYQMAVLLLFNNTEKLTYEEI 586 (725)
T ss_pred CChhHHHHHHHHHHHHhhccCCCeeeeeeccCceEEEEEecCceEEEEEEhHHHHHHHHccchhhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875
No 3
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....
Probab=100.00 E-value=8.8e-89 Score=768.67 Aligned_cols=537 Identities=31% Similarity=0.596 Sum_probs=490.4
Q ss_pred hhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q psy14846 14 WPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWS 93 (615)
Q Consensus 14 W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~~~~~~~L~~~~~~W~ 93 (615)
|+.|++||+.|+ .+.+++.+|+++|++||++|.. ++|+.||+++++.+.+++.++..++.+. +++.+|..|..+|.
T Consensus 1 W~~l~~~i~~i~-~~~~~~~~~~~lY~~vy~l~~~--~~~~~LY~~l~~~i~~~~~~~~~~l~~~-~~~~~l~~~~~~w~ 76 (588)
T PF00888_consen 1 WEILEEAIDQIF-KKSISKLSYMELYTCVYNLCDN--KYGEQLYDKLKEFISEYLKNIIESLLSS-SDEDLLEEYVQEWE 76 (588)
T ss_dssp HHHHHHHHHHHH-TT-GCCSHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHHHHHHHHHCTT-TTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH-cCCCChhHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHH
Confidence 999999999999 4468899999999999999988 9999999999999999999998888765 57899999999999
Q ss_pred HHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHhcCC
Q psy14846 94 KFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGE 173 (615)
Q Consensus 94 ~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~~i~~~l~~~ll~~I~~~R~g~ 173 (615)
+|+.++.+++++|.||||+|+.+ . +|++.|+.+++++++++++.+|.++|.|+
T Consensus 77 ~~~~~~~~i~~if~yLdr~yv~~-------------------~--------~f~~~v~~~~~~~i~~~ll~~I~~~R~g~ 129 (588)
T PF00888_consen 77 KYKKAIKYISDIFSYLDRNYVKR-------------------N--------LFREQVFKPLKDKIINALLNLIKNEREGE 129 (588)
T ss_dssp HHHHHHHHHHHHTHHHHHTSTTT-------------------T--------HHHHHTTTSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhHhhhhh-------------------h--------hHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999863 2 99999999999999999999999999999
Q ss_pred ccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhcC
Q psy14846 174 AFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLE 253 (615)
Q Consensus 174 ~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~L~ 253 (615)
.+|+..++++++++++|| +..+|.+.||++|++.|.+||+.++ +++.++.+|+++|+.++++|.+|+..|++
T Consensus 130 ~~~~~~l~~~~~~~~~l~-----~~~~y~~~fe~~~l~~t~~yY~~~~---i~~~~~~~Yl~~v~~~l~~E~~r~~~~l~ 201 (588)
T PF00888_consen 130 KIDRSLLKNVIEMFVELG-----SLEVYEEEFEKPFLEETKEYYKSES---IQENSVSEYLKKVENRLKEEEERVQKYLH 201 (588)
T ss_dssp TSHHHHHHHHHHHHHHTT-----HTHHHHHHTHHHHHHHHHHHHHHHH---HHHSHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred cccHHHHHHHHHHHhccc-----hHHhhHHHHHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999997 4679999999999999999999999 67789999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHhHHhHHhhhhhh
Q psy14846 254 SSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADII 333 (615)
Q Consensus 254 ~~~t~~~l~~~l~~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~ 333 (615)
+ +|..++.+++.++||.+|.+.|.+++..|+++++.++|++||+++++++++++.+++.|++||.+.|.+++.....
T Consensus 202 ~-~t~~ki~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~ly~l~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~-- 278 (588)
T PF00888_consen 202 P-STKEKIIKTLEEVLISDHLDELSSGFRDLLEEDDKEDLKRLYRLFSRVPNGLESLRDAFKEYIKKEGQNIIDSFEK-- 278 (588)
T ss_dssp G-GGHHHHHHHHHHHHTGGGHHHHHTCHHHHHHTT-HHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred h-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhHHHHhhccc--
Confidence 9 8999999999999999999999889999999999999999999999999999999999999999999998865421
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCccccccccCccccCCCCCCCCCchhHHHHHHhHH
Q psy14846 334 TQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDM 413 (615)
Q Consensus 334 ~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~y~D~ 413 (615)
..+|..||+.+++++++|+.++..||++++.|..++++||+.++|.+ ..++|++||+|||.
T Consensus 279 ~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~-------------------~~~~~e~La~y~d~ 339 (588)
T PF00888_consen 279 SSDPKEFIEDLLELYDKYEKLIQECFDNDSEFKKALDEAFEEFLNKN-------------------NNKIPELLAKYCDS 339 (588)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHCS-------------------TSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhHHHHHHcC-------------------CcchHHHHHHHhhH
Confidence 24678999999999999999999999999999999999999999974 36899999999999
Q ss_pred hhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHH-HcCCChhhHHHH
Q psy14846 414 LLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLR-DVGMPADYVNKL 492 (615)
Q Consensus 414 ~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk-~~g~~~~~t~kl 492 (615)
+|+++. ++.++++++..++.++.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.+|++|+ +|| .+||+||
T Consensus 340 ~l~~~~--~~~~~~~~~~~~~~i~~l~~~l~~Kd~F~~~Y~~~L~~RLl~~~~~~~~~E~~~i~~Lk~~~g--~~~~~kl 415 (588)
T PF00888_consen 340 LLRKSN--KKLSEEEIEQKLDDIVKLFSYLSDKDVFEKYYKKLLAKRLLSNKSFSEDAEKSMIEKLKKECG--SSYTSKL 415 (588)
T ss_dssp HHBSSC--CCS-HCCHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTT-BS-HHHHHHHHHHHHHTCC--CHHHHHH
T ss_pred hhhhcc--cccchHHHHHHhhhhEEEeeecchhHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhcccC--chhHHHH
Confidence 999985 56678899999999999999999999999999999999999999999999999999999 999 5999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcCCCCC--CCceEEEEeecCCCCCCCCCccccCChhHHHhHHHHHHHHhccCCCceEE
Q psy14846 493 ARMFQDIKVSQDLNYQFKQSYRGSKGSI--GDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQ 570 (615)
Q Consensus 493 ~~M~~D~~~S~~l~~~f~~~~~~~~~~~--~~~~~~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~ 570 (615)
++|++|++.|++++++|++...+.+... +++|++.|||+|+||..+...++.+|++|+.+++.|++||+.+|+||+|+
T Consensus 416 ~~M~~D~~~S~~~~~~f~~~~~~~~~~~~~~~~~~~~vls~~~Wp~~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~ 495 (588)
T PF00888_consen 416 EVMLKDIKNSKELNEEFKQKQSQNNIQLIPPFDFNVKVLSKGYWPKYPSENNIKLPPELQQALDSFEKFYKEKHKGRKLT 495 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-SS--CCEEEEEEEETTTS-S-S-SS-----HHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred HHHHHHHhhcHHHHHHHHHHhhhccccccCCCceEEEEecCCCCCCCCCCccccCCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999999999999999999887654333 67899999999999999644459999999999999999999999999999
Q ss_pred ecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCCcCCC
Q psy14846 571 WYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL 615 (615)
Q Consensus 571 w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~~~el 615 (615)
|.|++|+|+|++++++++++++||++||+||++||+.+++|++||
T Consensus 496 w~~~l~~~~i~~~~~~~~~~l~~s~~q~~iLl~Fn~~~~~t~~ei 540 (588)
T PF00888_consen 496 WLPSLSSVEIEFNFNNGKYELTVSTLQAAILLLFNDNDSLTVEEI 540 (588)
T ss_dssp EEGGGEEEEEEEESSSSEEEEEEEHHHHHHHHGGGSSSEEEHHHH
T ss_pred EecccCcEEEEEEecCCceeEEeeHHHHHHHHHHccCCCccHHHH
Confidence 999999999999999999999999999999999999999998774
No 4
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-87 Score=711.50 Aligned_cols=576 Identities=22% Similarity=0.386 Sum_probs=508.4
Q ss_pred CCCCCHHhhhhHHHHHHHHHHh--cCCCChhhHHHHHHHHHHhhccCC--------------CChhHHHHHHHHHHHHHH
Q psy14846 5 KGTQTFEDKWPSMRPIVLKLLQ--QEPVSQNEWQNLFYAVHVVCLWDE--------------KGPSKIVDALKEDIMNFI 68 (615)
Q Consensus 5 ~~~~~fe~~W~~L~~ai~~I~~--~~~~~~~s~~~lY~~vy~lc~~~~--------------~~~~~LY~~l~~~i~~~l 68 (615)
.+..||+++|..++.||++|+. ...+...+|+++|+.+|+.|++.. ..|+.+|+++....++++
T Consensus 15 ~~~~df~~~W~~i~~~I~~I~~~l~~~m~~l~~~evY~~IYn~c~n~tr~~~~~~~~~~~~~~~~s~li~~L~~~~k~~i 94 (773)
T COG5647 15 LSEEDFESTWEFIERAIGQIFERLYDSMAILSLMEVYTKIYNYCTNKTRSLESDLRWKIDFIYLGSRLIQKLVDYAKNYI 94 (773)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcccccchhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999994 235778999999999999999842 147889999998888888
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhh
Q psy14846 69 RHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQ 148 (615)
Q Consensus 69 ~~~~~~l~~~~~~~~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~ 148 (615)
.....+. .....+.+|..+++.|++|..++.+++++|.||||+|++.. +.+..+..++.++++..|+.
T Consensus 95 ~~~~~~~-s~~~~~~fl~~~v~~W~~~~~~~~~i~~~f~Ymdr~~~k~~-----------~~~~~~~~E~~slcl~~~~~ 162 (773)
T COG5647 95 EEYNRGR-SQENMEEFLDELVKFWNRFTKGATMINHLFLYMDRVYLKKA-----------RYDKTLVFEVYSLCLVKEKI 162 (773)
T ss_pred HHhcccc-cchhHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhhhc-----------cCCCccceeeehhhhhHHHH
Confidence 7655332 22235789999999999999999999999999999999843 12233457889999999999
Q ss_pred hHHHhhHHHHHHHHHHHHHHHhcCCccChHhHHHHHHHHHhhcC--CC-CchhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14846 149 SIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCS--NP-EDKLQIYREHFEKAYIAATESFYTVKAAEFL 225 (615)
Q Consensus 149 ~v~~~i~~~l~~~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~--~~-~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l 225 (615)
.+|.++.+.+++.+|..+.+.|.|+.||+..+..++.|+.+|+. +. ..++.+|.+.|||+||+.|.+||..++.+.+
T Consensus 163 ~~f~~i~~~lin~LL~~~~~~r~~~~id~~yi~~~~~~l~~l~~~s~~~k~~l~~y~s~Fep~fL~~t~~fY~~ess~~i 242 (773)
T COG5647 163 ESFRLIVDSLINPLLYYVERYRALQSIDRKYIEDAKDMLESLERPSDYKKENLSYYKSVFEPIFLEETWEFYEMESSEVI 242 (773)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCccCchHHHHHHHHHHhhcccchhccccchhhHHhhhHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999963 11 1236899999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH---hhHHHHhcCchHHHHHHHHHHHh
Q psy14846 226 QNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA---ECPKMIKMNETLKLELMMKLLDR 302 (615)
Q Consensus 226 ~~~~~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~---~~~~ll~~~~~~~L~~ly~L~~~ 302 (615)
+.+++.+||++|+.++++|.++++.|++. ++..+|.++++++||++|.+.+.. ++..+++..+.+.|..||+++++
T Consensus 243 ~~~~~~eyL~ka~~~~~~E~~~v~~yl~~-~~~kpl~~~~edvLi~~hld~l~~~~s~f~~~~d~~~~e~l~~lY~l~se 321 (773)
T COG5647 243 ELLSVTEYLEKAHKILEREEELVEIYLKV-STKKPLLEVLEDVLITRHLDDLEEQGSGFREALDASNLEKLQVLYRLLSE 321 (773)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHhhhhccHHHHHhchHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 99999999999999999999999999999 899999999999999999999997 79999999999999999999999
Q ss_pred hhCCcHHHHHHHHHHHHHHh--HHhHHh-hhh-h--------hccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHH
Q psy14846 303 IKDGITPMLQDLEAHIVNAG--LADMIA-SAD-I--------ITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARD 370 (615)
Q Consensus 303 ~~~~l~~l~~~~~~~i~~~g--~~~~~~-~~~-~--------~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~ 370 (615)
++.|+.+|.+.|.+||++.| ..+... ... + ....|..|++.+++.++.+..++.++|.+|..+.++++
T Consensus 322 ~~~~v~pl~~~f~~yV~~~g~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~q~lls~~~~~~~l~~~sf~~D~~~~~~l~ 401 (773)
T COG5647 322 TKYGVQPLQEVFERYVKDEGVLINIETNYIFHCKVDVGFLGSRECLPKLYVQKLLSCHDLFPSLVNESFEGDGSIVKALG 401 (773)
T ss_pred hhhhhhhHHHHHHHHHHhhchhhhhHHhhhhccchhhcccchhhhcHHHHHHHHHHHHHHHHHHHhhccCCcchHHHHHH
Confidence 99999999999999999999 211110 000 0 12357889999999999999999999999999999999
Q ss_pred HHHHHcccCccccccccCccccCCCCCCCCCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHH
Q psy14846 371 KAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFM 450 (615)
Q Consensus 371 ~af~~~lN~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~ 450 (615)
+||+.|+|.+. +....+||+||+|+|.+||++. +......++..+..++.||+|+.+||+|+
T Consensus 402 ~AF~~fin~~~----------------sa~~~~~e~Laky~D~~lkk~~--k~s~~~~i~~~l~~iitLfryv~~KDvFe 463 (773)
T COG5647 402 NAFKTFINGNE----------------SADSGPSEYLAKYIDGLLKKDG--KQSFIGKIKDLLQDIITLFRYVEEKDVFE 463 (773)
T ss_pred HHHHHHhcccc----------------ccccccHHHHHHHhHHHhhccc--cccccccHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999852 2245789999999999999975 43345678888999999999999999999
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCceEEEEe
Q psy14846 451 RFHKAHLTRRLILDTSADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKIL 529 (615)
Q Consensus 451 ~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~Vl 529 (615)
++|+++||||||+++|+|.+.|..||++|| .|| .+||+|+|+||+||..|.++...|++...+.+ ...++.|.||
T Consensus 464 ~~Yk~~laKRLL~g~S~s~~~E~~mis~LKk~~g--~~fT~Kle~Mf~DIsLS~e~~~af~~s~~s~~--~~~Dl~v~VL 539 (773)
T COG5647 464 KYYKKLLAKRLLNGRSASAQAELKMISMLKKVCG--QEFTSKLEGMFRDISLSSEFTEAFQHSPQSYN--KYLDLFVWVL 539 (773)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhh--hHHHHHHHHHHHhcchhHHHHHHHhhCchhhc--cccchhHHHH
Confidence 999999999999999999999999999999 999 49999999999999999999999988753222 2468999999
Q ss_pred ecCCCCCCCCCccccCChhHHHhHHHHHHHHhccCCCceEEecccCCeEEEEEEecCceEEEE---ecHHHHHHHHhhcC
Q psy14846 530 NAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLD---VTTFQMAVLFAWNE 606 (615)
Q Consensus 530 t~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~---vs~~Q~~iLl~Fn~ 606 (615)
+..+||.+|+...+.||++|.+.++.|++||.+||+||+|.|.++||+|+|++.|+.+++.+. ++++|+.|+++||+
T Consensus 540 t~a~WP~sp~~~~~~lP~~l~p~le~f~~~Y~sKhngRkL~W~~hLg~~evkarf~~~~~~~~is~~s~~q~~vfll~n~ 619 (773)
T COG5647 540 TQAYWPLSPEEVSIRLPKELVPILEGFKKFYSSKHNGRKLKWYWHLGSGEVKARFNEGQKYLEISTFSVYQLLVFLLFND 619 (773)
T ss_pred HHhcCCCCccccccCCChHHHHHHHHHHHHHHHhccCceEEeeeccccEEEEeeccCCccceehhHHHHHHHHHHHHhcC
Confidence 999999888888999999999999999999999999999999999999999999998764444 66889999999999
Q ss_pred CCCCCcCCC
Q psy14846 607 RPLDRFQNL 615 (615)
Q Consensus 607 ~~~~~~~el 615 (615)
.+++|+.||
T Consensus 620 ~e~lt~eei 628 (773)
T COG5647 620 HEELTFEEI 628 (773)
T ss_pred ccceeHHHH
Confidence 999998874
No 5
>KOG2284|consensus
Probab=100.00 E-value=2.3e-87 Score=663.94 Aligned_cols=561 Identities=27% Similarity=0.501 Sum_probs=511.9
Q ss_pred CCCCCCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCC-CChhHHHHHHHHHHHHHHHHHHHHHhcccchh
Q psy14846 4 DKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDE-KGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQ 82 (615)
Q Consensus 4 ~~~~~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~-~~~~~LY~~l~~~i~~~l~~~~~~l~~~~~~~ 82 (615)
.|..++||++|..|.+.|..|..-+++++..|.+-|+.||.+|..-| ..|++||..++.++++|+++.+..+..- +.+
T Consensus 5 kp~vv~fd~~w~~l~~si~~ii~l~~i~~~~w~~~fsdvy~icvs~p~pl~erly~e~k~~i~~hvrq~~~~~v~~-~p~ 83 (728)
T KOG2284|consen 5 KPKVVEFDKVWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLSERLYNEVKACIQEHVRQKRQDIVDV-DPD 83 (728)
T ss_pred CceeeeHHHHHHHHHHHHHHHHhccchhccccccchhhHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhhhcC-CHH
Confidence 57889999999999999999998889999999999999999999854 5799999999999999999877665433 345
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhhhhhhccccccccccc--CcccccccchhhHHHHHHHhhhhhHHHhhHHHHHH
Q psy14846 83 ALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNN--NNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQD 160 (615)
Q Consensus 83 ~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~--~~~~~~~~~~~~i~~l~l~~f~~~v~~~i~~~l~~ 160 (615)
.+|..|.+.|+.|..+..++..+|.|||+.|+++...|.+-+. .|.-.+.++...|..+||++|++.+..++...|+.
T Consensus 84 ~~l~~yh~~w~~~~~ga~~~~~l~~yln~qfvk~~~~t~~d~~~~y~~~~~~~~~~eig~lal~~w~~~~v~~i~~~lv~ 163 (728)
T KOG2284|consen 84 LLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDNFAQYAAFLQIPDVKEIGCLALEIWKEDLVKTILPQLVK 163 (728)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhcccchhhhhhhcchhcCCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999998755444333 24444455678899999999999999999999999
Q ss_pred HHHHHHHHHhcCCccC-hHhHHHHHHHHHhhcCC--------------CCchhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14846 161 SAMKLVQSERNGEAFD-SQLVIGVRESYVNLCSN--------------PEDKLQIYREHFEKAYIAATESFYTVKAAEFL 225 (615)
Q Consensus 161 ~ll~~I~~~R~g~~id-~~~l~~v~~~~~~L~~~--------------~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l 225 (615)
.+|..|.++|.|+..+ ...+.+++.+|+.+... .+.++.+|++.||.|||.+|.+||+++|+..+
T Consensus 164 ~ll~~i~ndr~g~~p~i~~~v~gvinsfv~~e~tdfdvvpaegaryka~~~~~~fyqe~fe~p~lt~t~~yy~~~a~~~l 243 (728)
T KOG2284|consen 164 LLLIAIDNDRKGNFPHIANEVSGVINSFVKMEETDFDVVPAEGARYKARESTTAFYQESFEKPLLTDTEQYYSALAQKML 243 (728)
T ss_pred HHHHHhhcccCCCCccHHHHHHHHHHhhhhhhhcccccccccccchhhccccHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 9999999999999988 56789999999998621 22357899999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCchHHHHHHHHHHHhhhC
Q psy14846 226 QNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKD 305 (615)
Q Consensus 226 ~~~~~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~L~~~~~~ 305 (615)
.+.+|++|+.+|..++++|+-||+.|||+ ++..+++..|++++|.+|.+.+...|..+|.+++..||+.||.|+.-+.-
T Consensus 244 ~~~~cs~yme~vi~~l~~ee~r~~kylh~-ss~~kvi~~cq~~mi~~h~~~lha~ch~~i~~e~~~d~~nmy~ll~~i~~ 322 (728)
T KOG2284|consen 244 TDLSCSEYMEQVIVLLEQEEMRAKKYLHE-SSVEKVITLCQKVMIKAHKDKLHAVCHDLITNEENKDLRNMYRLLKPIQA 322 (728)
T ss_pred hhccHHHHHHHHHHHhhHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCcccccc
Q psy14846 306 GITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKL 385 (615)
Q Consensus 306 ~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~ 385 (615)
|++.+.+.|++||.+.|..+++.... .+-|..||+.++.+|.+|..++...|.+|..|..+++.|...++|...
T Consensus 323 gl~~mv~e~~~~v~~~gl~a~s~lt~--en~p~~fve~vl~v~~kf~~~~~~v~~~d~~f~s~ldkal~~vvn~~e---- 396 (728)
T KOG2284|consen 323 GLSVMVKEFEEYVKKKGLEAVSRLTG--ENVPQQFVENVLRVYNKFNDMKTAVFMDDGEFSSGLDKALQGVVNSKE---- 396 (728)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhcc--ccchHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhhccCC----
Confidence 99999999999999999988765432 256899999999999999999999999999999999999999999742
Q ss_pred ccCccccCCCCCCCCCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCC
Q psy14846 386 ELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDT 465 (615)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~ 465 (615)
| ..+.+++||.||+|||.+|||+. ||+++.++|.+|+..+.+|+|++|||+|.++|.++||+||+.+.
T Consensus 397 --p--------g~sv~ka~e~la~y~d~llkks~--kg~se~~~e~~l~s~i~if~yi~dkdifqkfys~mla~rli~~~ 464 (728)
T KOG2284|consen 397 --P--------GQSVPKASERLARYTDGLLKKST--KGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIAST 464 (728)
T ss_pred --C--------CccccchHHHHHHHhhhHHhhhh--cCCChhhHHHhhhcceeeeeecccHHHHHHHHHHHHHHHHHhhc
Confidence 1 02357899999999999999985 88999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCCCCCCcccc
Q psy14846 466 SADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVS 544 (615)
Q Consensus 466 s~s~~~E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~Vlt~~~WP~~~~~~~~~ 544 (615)
|.|.|.|..||++|| .||+ +||+++- +.|++.|.+++.+|.+.+. +|.
T Consensus 465 s~smd~ee~minklkqacgy--efts~~~--~td~~~s~~lnn~f~~~i~---------------------------nf~ 513 (728)
T KOG2284|consen 465 SISMDAEELMINKLKQACGY--EFTSSWP--LTDPQLSTNLNNQFAQDIA---------------------------NFH 513 (728)
T ss_pred ccccchHHHHHHHHHHHhCc--eecccCC--CCChhhccccchhHHHHHH---------------------------hcc
Confidence 999999999999999 9997 9999998 9999999999999986543 278
Q ss_pred CChhHHHhHHHHHHHHhccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCCcCCC
Q psy14846 545 LPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL 615 (615)
Q Consensus 545 lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~~~el 615 (615)
+|.+|+..++.|+.||..+|+||+|+|.+.+++++|+.++-++.|.-.|.+|||++||+||..+..++.||
T Consensus 514 ~pq~l~~~iq~fe~fyt~~~~grkltwl~~~~~g~v~~~yl~k~yva~~~~yqma~ll~f~~~~~i~~k~i 584 (728)
T KOG2284|consen 514 LPQILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQYVAQMYVYQMAALLCFERRDAILVKDI 584 (728)
T ss_pred chHHHHHHHHHHHHHhccccCCceehhhhhhcccceeeeecCchHHHHHHHHHHHHHHHhcccccchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999887764
No 6
>KOG2167|consensus
Probab=100.00 E-value=7.1e-78 Score=622.62 Aligned_cols=509 Identities=26% Similarity=0.438 Sum_probs=464.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCccccccc
Q psy14846 55 KIVDALKEDIMNFIRHAQQRVLAHE-EDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISA 133 (615)
Q Consensus 55 ~LY~~l~~~i~~~l~~~~~~l~~~~-~~~~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~ 133 (615)
.||+.|++.+++|+++....+.... +...+|..+.++|..|...+..++.+|.||||.|+.+.++ .
T Consensus 1 ~ly~~l~~~~~~~~~~~~~q~~~~~~d~~~~l~k~~~~w~~~~~~~~mIRsIfl~lDrt~~~qsnp----------~--- 67 (661)
T KOG2167|consen 1 VLYKQLRQICEQHIKAQIEQLRGDELDSVLFLEKIGRCWQPDPKQMIMIRSIFLHLDRTYVLQSNP----------Y--- 67 (661)
T ss_pred ChHHHHHHHHHHHHHHHHhhCcCCcchHHHHHHHHhhHhhhhHHhhhhhhheeeecCCcccccCCC----------C---
Confidence 3899999999999996655554322 3457899999999999999999999999999999986321 1
Q ss_pred chhhHHHHHHHhhhhhHHH----hhHHHHHHHHHHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHH
Q psy14846 134 EESTVRVLMLDSWNQSIFN----DIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAY 209 (615)
Q Consensus 134 ~~~~i~~l~l~~f~~~v~~----~i~~~l~~~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~ 209 (615)
.++++++++.+||.+++. .+..+..++++..|+++|.|+++|++.+++++.|+..+ .+|.+.|++.|
T Consensus 68 -v~siWem~l~LFR~~f~~~~~~~vqs~~~N~ll~s~er~rsgeAvdrslLrsll~MLsd~--------~iY~esF~~~f 138 (661)
T KOG2167|consen 68 -VLSIWEMGLQLFRAHFSQEPQPFVQSKTFNGLLKSIERERSGEAVDRSLLRSLLKMLSDL--------QIYKESFELTF 138 (661)
T ss_pred -cCCHHHhhHHHHHHHhhccCCchhhccchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH--------HhhhhhhHHHH
Confidence 379999999999999987 48889999999999999999999999999999999765 48999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhcC
Q psy14846 210 IAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA-ECPKMIKMN 288 (615)
Q Consensus 210 L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~-~~~~ll~~~ 288 (615)
++.+.++|.++..+..++..+++||++++.++.+|..|+..+++. +|...+..++++.|+..|++.|+. ++..+++..
T Consensus 139 ls~f~~lY~aE~~d~~Qel~v~eYl~h~e~~l~~E~~~~i~~~D~-st~k~l~atV~~~LL~~hL~~IL~kgl~~lvDm~ 217 (661)
T KOG2167|consen 139 LSLFRELYAAEGQDKRQELEVPEYLEHVEGRLEEENDRVIEYFDS-STKKPLIATVERCLLSRHLDLILTKGLDSLVDMR 217 (661)
T ss_pred HHHHHHHHHHHhcchhhhcccHHHHHhhhhcccchHHHHHHhccc-ccccchHHHHHHHHHHHHHHHHHhcchHHhhhhh
Confidence 999999999999999999999999999999999999999999999 786779999999999999999996 799999999
Q ss_pred chHHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCC--hhHH
Q psy14846 289 ETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDD--PRFL 366 (615)
Q Consensus 289 ~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~--~~f~ 366 (615)
+..++.+||.|++++.++...++..|++|+++.|..++.... ....+|+.+++++++.+-++..||..+ ..|.
T Consensus 218 q~~d~~rly~L~~r~~~g~l~l~qq~sdylk~~G~KlV~de~-----kDk~mVqELL~FK~k~Dii~~~sF~~~v~e~f~ 292 (661)
T KOG2167|consen 218 QTSDLTRLYMLFSRVQGGQLSLLQQWSDYLKKPGFKLVIDEE-----KDKDMVQELLDFKKKVDIIVDESFLKYVAEKFL 292 (661)
T ss_pred hccchHhHHHHHHHHhcchHHHHHHHHHHHhcccceeccCch-----hhHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHH
Confidence 999999999999999989999999999999999988663211 135799999999999999999999998 8999
Q ss_pred HHHHHHHHHcccCccccccccCccccCCCCCCCCCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccCh
Q psy14846 367 TARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNK 446 (615)
Q Consensus 367 ~~l~~af~~~lN~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~K 446 (615)
.++++||+.|+|.. .+++||+||+|.|..|+.|. ++.++++++..++.++.|||||..|
T Consensus 293 ~~~~~afe~fink~-------------------~~rpAelIak~~dt~Lr~gn--k~~~d~~l~~~~d~i~~lfr~i~gk 351 (661)
T KOG2167|consen 293 NSMSKAFETFINKR-------------------RNRPAELIAKYVDTKLRAGN--KETSDEELEFVLDKILVLFRFIHGK 351 (661)
T ss_pred HHHHHHHHHHHhcc-------------------cCCHHHHHHHHHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHhcc
Confidence 99999999999964 35799999999999999974 7778999999999999999999999
Q ss_pred hHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCceE
Q psy14846 447 DVFMRFHKAHLTRRLILDTSADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSIN 525 (615)
Q Consensus 447 d~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~ 525 (615)
|+||.+|++.||+|||.++|+|.|+|+.|+.+|| +|| +.||+||+|||+||..|++++..|+++...++...+.-+.
T Consensus 352 dvfeA~ykkdLakrLLl~kSAsvdae~~ml~~lk~ecg--s~ft~kLegMfkdme~sk~i~~~f~~~~~~~~~~~~~l~~ 429 (661)
T KOG2167|consen 352 DVFEAFYKKDLAKRLLLGKSASVDAEKSMLSKLKLECG--SAFTYKLEGMFKDMELSKEINRAFKQSKGANNRLEGNLLT 429 (661)
T ss_pred HHHHHHHHHHHHHHHHhccchhhcchhHHHHHhhhhcc--hHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccCcCCceE
Confidence 9999999999999999999999999999999999 999 6999999999999999999999999985443322122289
Q ss_pred EEEeecCCCCCCCCCccccCChhHHHhHHHHHHHHhccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhc
Q psy14846 526 IKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWN 605 (615)
Q Consensus 526 ~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn 605 (615)
+.|+|.|+||.++ +..+.||+++..+++.|..||..+|.||+|+|.+.+|+|.+++.|..|+.++.||++|++|||+||
T Consensus 430 v~vlt~~yWpty~-~~ev~Lp~em~~~~e~F~~fyl~k~sgrklqW~~~lg~~v~ka~f~~gkkel~~slfq~~vll~fn 508 (661)
T KOG2167|consen 430 VNVLTMGYWPTYP-PMEVLLPKEMRDCQEIFKKFYLGKHSGRKLQWQDSLGHCVLKAEFKEGKKELQVSLFQTLVLLMFN 508 (661)
T ss_pred EEeecccccCCCC-chhccCCHHHHHHHHHHHHhccccccCcceeeecCCcchhhhhhccCCchHHHHHHHHHhHhhccC
Confidence 9999999999995 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCC
Q psy14846 606 ERPLDRFQNL 615 (615)
Q Consensus 606 ~~~~~~~~el 615 (615)
+.+.||..||
T Consensus 509 ~~~~~s~~ei 518 (661)
T KOG2167|consen 509 EGEGLSYEEI 518 (661)
T ss_pred CCCcccHHHH
Confidence 9999998764
No 7
>smart00182 CULLIN Cullin.
Probab=100.00 E-value=4e-34 Score=261.88 Aligned_cols=141 Identities=43% Similarity=0.771 Sum_probs=130.6
Q ss_pred cccChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCC
Q psy14846 442 YVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSI 520 (615)
Q Consensus 442 ~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~ 520 (615)
|+++||+|+.+|+++||+|||..++.+.+.|..||++|| +|| .++|+||++|++|++.|++++++|++...+++...
T Consensus 1 y~~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~~~G--~~~~~kle~Ml~Di~~S~~l~~~f~~~~~~~~~~~ 78 (142)
T smart00182 1 YIQDKDVFEKYYKKHLAKRLILNRSASDDAEENMITKLKQECG--YEFTSKLERMFRDISLSKDLNQSFKDMLENNSNKP 78 (142)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 789999999999999999999999999999999999999 999 59999999999999999999999998876543334
Q ss_pred CCceEEEEeecCCCCCCCCCccccCChhHHHhHHHHHHHHhccCCCceEEecccCCeEEEEEEe
Q psy14846 521 GDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSN 584 (615)
Q Consensus 521 ~~~~~~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~ 584 (615)
+++|+|.|||+++||..+...++.||++|+.+++.|++||..+|+||+|+|.|++|+|+|+++|
T Consensus 79 ~~~~~~~VLs~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~RkL~W~~~lg~~~l~~~~ 142 (142)
T smart00182 79 IIDLNVRVLTSGYWPTSSTEVEINLPQELEDALEEFEEFYLAKHSGRKLTWLHSLGRGEVKANF 142 (142)
T ss_pred CCceEEEECCCCCCCCCCCCCceECCHHHHHHHHHHHHHHHhCCCCCeEEEEcCCceEEEEEEC
Confidence 6789999999999999864378999999999999999999999999999999999999999764
No 8
>KOG2165|consensus
Probab=99.88 E-value=2.7e-22 Score=213.04 Aligned_cols=176 Identities=22% Similarity=0.305 Sum_probs=158.4
Q ss_pred HHHhhcccChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHH--h
Q psy14846 437 LLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQS--Y 513 (615)
Q Consensus 437 ~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~--~ 513 (615)
-.|...+.+|+.|.+.||..||.||+.....+.+.|..-+..|| ++|. .-.+.|++|++|+..|+++++.+++. .
T Consensus 443 ~mLVsIygSKElfv~EyRnLLAdRLl~~~dy~~E~E~R~leLLKlrFgE--t~lq~CevML~Dv~dS~~id~~i~~~~~~ 520 (765)
T KOG2165|consen 443 GMLVSIYGSKELFVKEYRNLLADRLLTLTDYDPEKEIRNLELLKLRFGE--TSLQGCEVMLNDVIDSRRIDQSIHNESEL 520 (765)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHhhccc--chHHHHHHHHHhhhhhhhhhhhhhhhhhh
Confidence 34556678999999999999999999999999999999999999 9996 67789999999999999999999884 2
Q ss_pred hc-CCCCCCCceEEEEeecCCCCCCCCCccccCChhHHHhHHHHHHHHhccCCCceEEecccCCeEEEEEEecCceEEEE
Q psy14846 514 RG-SKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLD 592 (615)
Q Consensus 514 ~~-~~~~~~~~~~~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~ 592 (615)
.. ......+.+++.+|++.+||... +..+.+|.+++..++.|.+-|.+.+++|+|.|.+++|.|+|.+.+.+++.+++
T Consensus 521 ~r~~e~~~~~~i~~~IlS~~fWP~~~-~~~~~lP~pl~~el~~Y~~~Y~~~K~~RkL~w~~~lG~Veieie~~DRtl~~t 599 (765)
T KOG2165|consen 521 SRGAEEVPDFGISATILSSLFWPPLC-DEAFHLPGPLEAELDKYAEIYEQLKRGRKLQWLKNLGKVEIEIEFEDRTLVLT 599 (765)
T ss_pred hcccccCCCCchhhhhhhhhcCCccc-cccccCChhHHHHHHHHHHHHHHhccCCeeeeecccCeEEEEEEEcCeEEEEe
Confidence 21 11112467899999999999984 67999999999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHhhcCCCCCCcCCC
Q psy14846 593 VTTFQMAVLFAWNERPLDRFQNL 615 (615)
Q Consensus 593 vs~~Q~~iLl~Fn~~~~~~~~el 615 (615)
||+.||+|+++|.+.++||+.||
T Consensus 600 Vsp~qA~iI~~Fqek~twt~eel 622 (765)
T KOG2165|consen 600 VSPEQAAIINLFQEKNTWTLEEL 622 (765)
T ss_pred eCHHHHHHHHHhcCcccccHHHH
Confidence 99999999999999999998764
No 9
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [].
Probab=97.42 E-value=0.0024 Score=58.94 Aligned_cols=147 Identities=24% Similarity=0.353 Sum_probs=100.6
Q ss_pred CCCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHH---hhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcccchhH
Q psy14846 7 TQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHV---VCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQA 83 (615)
Q Consensus 7 ~~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~---lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~~~~~~ 83 (615)
+...++.|..+..++-.+|+++++. .+-+++-+.|-. +|..+ .....+-+.+++.+..-+......+... +++.
T Consensus 2 ~~~~~~~W~~~~~~vl~lF~g~~l~-~~iEdlN~lv~~~i~~~~~~-~~~~~~~~dl~elL~tg~~~L~~~l~~~-~~~~ 78 (158)
T PF08539_consen 2 NMSSDDAWNSLCAKVLPLFQGERLR-LPIEDLNELVRFHIKLCIQS-FPPSYFLEDLEELLTTGMYILENQLNEV-PDNR 78 (158)
T ss_pred CCchhhhHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhc-chhH
Confidence 4567899999999999999998766 667777666644 45552 2344555666666666555555555443 5778
Q ss_pred HHHHHHHHHHHHHH-hhccccchhhhhhhhhhcccccccccccC-----cccccccchhhHHHHHHHhhhhhHHHhhHHH
Q psy14846 84 LLKAYIQEWSKFLA-QCSYLPTPFRQLETSLVNKSVSTSLTNNN-----NKQKISAEESTVRVLMLDSWNQSIFNDIKQR 157 (615)
Q Consensus 84 ~L~~~~~~W~~y~~-~~~~l~~vf~yLdr~yv~~~~~~~l~~~~-----~~~~~~~~~~~i~~l~l~~f~~~v~~~i~~~ 157 (615)
+|..++..|.-|.. ..-++..+|..|++.+-.... +-++.. |.. ..+..+|+.++|..||+.|+-|..++
T Consensus 79 ~l~rL~eiW~~Ff~~VlP~lqavFlPLq~~f~~~~~--~~~~~~~~~~~~~~--~~~~l~Vr~l~L~~FRD~IvLP~y~~ 154 (158)
T PF08539_consen 79 LLKRLVEIWQFFFTQVLPYLQAVFLPLQLEFQGNGK--YMNPSEAREFWGNK--AGSELDVRRLLLIAFRDSIVLPYYQR 154 (158)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhhhHHhhcccCc--cCChhhhhcccccc--CCCCCcHHHHHHHHHHHHhhhcchHh
Confidence 99999999998754 555788899999976644321 011100 110 11337999999999999999888877
Q ss_pred HHH
Q psy14846 158 LQD 160 (615)
Q Consensus 158 l~~ 160 (615)
+..
T Consensus 155 l~~ 157 (158)
T PF08539_consen 155 LKA 157 (158)
T ss_pred hhc
Confidence 653
No 10
>KOG2167|consensus
Probab=96.24 E-value=0.077 Score=57.64 Aligned_cols=200 Identities=8% Similarity=0.026 Sum_probs=120.8
Q ss_pred hhhhHHHHHHHHHHhcC---CCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhc---cc---chh
Q psy14846 12 DKWPSMRPIVLKLLQQE---PVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLA---HE---EDQ 82 (615)
Q Consensus 12 ~~W~~L~~ai~~I~~~~---~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~---~~---~~~ 82 (615)
..|..|++++.-|.+.+ +.-...|-.+++.+|+-|..+..+...+.+.++.....+..+...-+.. .. ...
T Consensus 112 vdrslLrsll~MLsd~~iY~esF~~~fls~f~~lY~aE~~d~~Qel~v~eYl~h~e~~l~~E~~~~i~~~D~st~k~l~a 191 (661)
T KOG2167|consen 112 VDRSLLRSLLKMLSDLQIYKESFELTFLSLFRELYAAEGQDKRQELEVPEYLEHVEGRLEEENDRVIEYFDSSTKKPLIA 191 (661)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcchhhhcccHHHHHhhhhcccchHHHHHHhcccccccchHH
Confidence 35788888888766543 1223556777899999999865556666676666665555542222211 11 234
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhh--hHHHhhHHHHHH
Q psy14846 83 ALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQ--SIFNDIKQRLQD 160 (615)
Q Consensus 83 ~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~--~v~~~i~~~l~~ 160 (615)
.+.+.+...|-+..... ++++-+|..=+.. ....+.++-..+.. .+..+..+.+.+
T Consensus 192 tV~~~LL~~hL~~IL~k----gl~~lvDm~q~~d------------------~~rly~L~~r~~~g~l~l~qq~sdylk~ 249 (661)
T KOG2167|consen 192 TVERCLLSRHLDLILTK----GLDSLVDMRQTSD------------------LTRLYMLFSRVQGGQLSLLQQWSDYLKK 249 (661)
T ss_pred HHHHHHHHHHHHHHHhc----chHHhhhhhhccc------------------hHhHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 67777888887653322 2344444331110 13345554444311 223456677777
Q ss_pred HHHHHHHHHhcCCccChH--hHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy14846 161 SAMKLVQSERNGEAFDSQ--LVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYAD 238 (615)
Q Consensus 161 ~ll~~I~~~R~g~~id~~--~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~ 238 (615)
....+|..++.++..... ..+.-+++++..+ ++...- .+|+..++++|...++ .....+.+|+.+..
T Consensus 250 ~G~KlV~de~kDk~mVqELL~FK~k~Dii~~~s--------F~~~v~-e~f~~~~~~afe~fin--k~~~rpAelIak~~ 318 (661)
T KOG2167|consen 250 PGFKLVIDEEKDKDMVQELLDFKKKVDIIVDES--------FLKYVA-EKFLNSMSKAFETFIN--KRRNRPAELIAKYV 318 (661)
T ss_pred ccceeccCchhhHHHHHHHHHHHHHhhHHHHHH--------HHHhhH-HHHHHHHHHHHHHHHh--cccCCHHHHHHHHH
Confidence 778888888876653322 3566677766553 333333 7899999999999998 46778999998877
Q ss_pred HHHHHH
Q psy14846 239 AKLHEE 244 (615)
Q Consensus 239 ~~l~eE 244 (615)
..+-.+
T Consensus 319 dt~Lr~ 324 (661)
T KOG2167|consen 319 DTKLRA 324 (661)
T ss_pred HHHHHh
Confidence 654433
No 11
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=56.63 E-value=79 Score=33.11 Aligned_cols=170 Identities=14% Similarity=0.188 Sum_probs=91.5
Q ss_pred HHHhhHHHHhcCchHHHHHHHHHHHhhh---CCcHHHHHHHHHHHHHHhHHhHHhhhhhh--ccCHHHHHHHHHHHHHHH
Q psy14846 277 ILAECPKMIKMNETLKLELMMKLLDRIK---DGITPMLQDLEAHIVNAGLADMIASADII--TQDSEKYVERLLELFNQF 351 (615)
Q Consensus 277 il~~~~~ll~~~~~~~L~~ly~L~~~~~---~~l~~l~~~~~~~i~~~g~~~~~~~~~~~--~~~~~~~v~~ll~l~~~~ 351 (615)
+...|....+.+|.+.+.|.++||.-+. .|++...+.+.+.|.....+.+....... ...+.-|+..|..+++..
T Consensus 12 f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~~i~~~~r~~~~~~~~~~~~~~~~~~~~~~lt~LFe~i 91 (331)
T PF08318_consen 12 FLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCDIIAEQSRKLLDSATSGSSDSRSPVFYADALTKLFEHI 91 (331)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHH
Confidence 3456888889999999999999998763 35555555555555555444443322110 123444555555555554
Q ss_pred H-------HHHHHHccCChhH--HHHHHHHHH----HcccCccccccccCccccCCCCCCCCCchhHHHHHHhHHhhccC
Q psy14846 352 S-------KLVKDAFKDDPRF--LTARDKAYK----NVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKT 418 (615)
Q Consensus 352 ~-------~li~~~F~~~~~f--~~~l~~af~----~~lN~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~y~D~~lk~~ 418 (615)
. .+|..+|+..... ...+..-+. .+++. |... ..-.+...-+..|-...+.+.
T Consensus 92 a~ii~~h~~lI~~~yG~~~~~~vi~~Lq~E~D~q~~~Ild~---f~~~-----------R~l~~~~~~i~~~~~~~~~~~ 157 (331)
T PF08318_consen 92 ATIIEQHQPLIEKYYGPGYMVYVIEKLQKECDLQAGIILDT---FMDE-----------RRLDRKLQDIQSYNFSFLVKN 157 (331)
T ss_pred HHHHHHccHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----------hcHHHHHHHHHhhhhhhhccc
Confidence 4 4566688765432 222222222 12221 0000 000122233444444333320
Q ss_pred C----------------CCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCCCC
Q psy14846 419 P----------------LSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSA 467 (615)
Q Consensus 419 ~----------------~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~ 467 (615)
. ...+.+.-+++..|+.+..++.. -..|.++++.|.-.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~d~reld~lL~Eis~i~~~-------w~lY~rFi~~k~~~~~~~ 215 (331)
T PF08318_consen 158 SGRSSSSSSRAASSSQSEDEGIDPRELDALLNEISLILQR-------WSLYCRFISRKWNEFSDP 215 (331)
T ss_pred cccccccccccccccccccCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccc
Confidence 0 01233456788888888877753 358999999998875443
No 12
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=51.09 E-value=9.8 Score=32.86 Aligned_cols=30 Identities=10% Similarity=0.490 Sum_probs=21.3
Q ss_pred CCHHhhhhHHHHHHHHHHhcCCCChhhHHHH
Q psy14846 8 QTFEDKWPSMRPIVLKLLQQEPVSQNEWQNL 38 (615)
Q Consensus 8 ~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~l 38 (615)
.|+++.|+.|.++|+.+++..++. ..|+.+
T Consensus 46 ~dL~~nWeVlaEpIQTvmRr~g~~-~pYE~L 75 (115)
T PF08328_consen 46 EDLDENWEVLAEPIQTVMRRYGIP-NPYEKL 75 (115)
T ss_dssp HHHCT-GGGGHHHHHHHHHHTT-S-SHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 478999999999999999865443 334444
No 13
>PF04001 Vhr1: Transcription factor Vhr1; InterPro: IPR007147 This is a family of proteins of unknown function found in yeast.
Probab=50.54 E-value=1.1e+02 Score=25.08 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=38.4
Q ss_pred HHHHHHHHhHhc-------CCCCCCh-HH-HHHHHHHHH-HcCCChhhHHHHHHHHHHHHHhHHH
Q psy14846 451 RFHKAHLTRRLI-------LDTSADS-EK-EENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDL 505 (615)
Q Consensus 451 ~~Y~~~LakRLL-------~~~s~s~-~~-E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~~S~~l 505 (615)
...+++-|+||= ..+.+|. |. =+.+-..|+ |+|+|++++...+..+.---+|-.-
T Consensus 22 ~~WK~FSsRRLELId~~~Ls~~KASEQd~~I~~iA~iLR~Ef~Yp~~~~~~FeKLV~aavQSVRR 86 (95)
T PF04001_consen 22 RKWKRFSSRRLELIDKFDLSSRKASEQDDNIRQIAEILRTEFGYPESYSSEFEKLVTAAVQSVRR 86 (95)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhhhhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHH
Confidence 467788888862 2333332 33 356667889 9999999999999998877776543
No 14
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=30.77 E-value=96 Score=26.95 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCCccCh-HhHHHHHHHHHhhcCCCCchhhhhH
Q psy14846 155 KQRLQDSAMKLVQSERNGEAFDS-QLVIGVRESYVNLCSNPEDKLQIYR 202 (615)
Q Consensus 155 ~~~l~~~ll~~I~~~R~g~~id~-~~l~~v~~~~~~L~~~~~~~l~~Y~ 202 (615)
++++.+.|-+++...|..++-+. -.+-++..||++|| +.+|+
T Consensus 2 s~~v~e~I~~iVe~RrqEGA~~~Dvs~SSv~sMLLELG------LRVYe 44 (118)
T PRK13713 2 SNEVYEKINAIVEERRQEGAREKDVSFSSVASMLLELG------LRVYE 44 (118)
T ss_pred chHHHHHHHHHHHHHHHcCCCccCccHHHHHHHHHHHh------HHHHH
Confidence 35566777778888886655221 12567889999998 56775
No 15
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=28.61 E-value=1.6e+02 Score=24.09 Aligned_cols=52 Identities=12% Similarity=0.277 Sum_probs=26.8
Q ss_pred hhh-hHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHH
Q psy14846 12 DKW-PSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIM 65 (615)
Q Consensus 12 ~~W-~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~ 65 (615)
.+| ..++..+..+++..+..+.+|.+++..|--.+.. .-++.+...+...|.
T Consensus 30 ~GW~d~vr~~~re~i~~~g~~~~~~~~l~~~i~P~Ar~--~VP~~vk~ell~~Ir 82 (86)
T PF10163_consen 30 CGWRDEVRQLCREIIRERGIDNLTFEDLLEEITPKARA--MVPDEVKKELLQRIR 82 (86)
T ss_dssp TTHHHHHHHHHHHHHHHH-TTTSBHHHHHHHHHHHHHH--CS-HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHH
Confidence 455 3455555555554344556677777776666655 333434443333333
No 16
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=25.27 E-value=4.5e+02 Score=27.35 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHhhHHHHhcCchHHHHHHHHHHHhhh---CCcHHHHHHHHHHHHHHhHHhHHhhhhh--hccCHHHHHHHHHHHHHHH-
Q psy14846 278 LAECPKMIKMNETLKLELMMKLLDRIK---DGITPMLQDLEAHIVNAGLADMIASADI--ITQDSEKYVERLLELFNQF- 351 (615)
Q Consensus 278 l~~~~~ll~~~~~~~L~~ly~L~~~~~---~~l~~l~~~~~~~i~~~g~~~~~~~~~~--~~~~~~~~v~~ll~l~~~~- 351 (615)
...|....+++|.+.+.+.++||..+. .|++.....+.+.|.............. ....+.-|+..|..+++..
T Consensus 13 ~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic~~Ia~~ar~~~~~~~~~~~~~~~~~~~a~~lt~Lfe~ia 92 (324)
T smart00762 13 KERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYICDIIADKARSLLNELAGASDDTRAAVFYADTLTHLFENVA 92 (324)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHHHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHH
Confidence 346888899999999999999998763 3555555555555554443333221110 0112334555555554444
Q ss_pred ------HHHHHHHccCC
Q psy14846 352 ------SKLVKDAFKDD 362 (615)
Q Consensus 352 ------~~li~~~F~~~ 362 (615)
..+|..+|+.+
T Consensus 93 ~ii~~h~~~I~~~yG~~ 109 (324)
T smart00762 93 TIIEQHQPVIEKYYGPD 109 (324)
T ss_pred HHHHhccHHHHHHcCch
Confidence 45666777644
No 17
>KOG0412|consensus
Probab=24.78 E-value=5.1e+02 Score=29.85 Aligned_cols=82 Identities=10% Similarity=0.205 Sum_probs=54.2
Q ss_pred HHHHHH-hhHHHHhcCchHHHHHHHHHHHhhh---CCcHHHHHHHHHHHHHHhHHhHHhhhhhhcc---CHHHHHHHHHH
Q psy14846 274 KNTILA-ECPKMIKMNETLKLELMMKLLDRIK---DGITPMLQDLEAHIVNAGLADMIASADIITQ---DSEKYVERLLE 346 (615)
Q Consensus 274 ~~~il~-~~~~ll~~~~~~~L~~ly~L~~~~~---~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~---~~~~~v~~ll~ 346 (615)
+..|+. .|....++++..++.|+|++|.-+. .|++.....+.+-|...+.+.+......... -..-|.+.|..
T Consensus 192 L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~iIA~kar~~l~n~~~~~~~~~r~qv~fad~Lt~ 271 (773)
T KOG0412|consen 192 LSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQIIASKARKNLANVKAGMEDDNRRQVFFADTLTM 271 (773)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhHhHHHHHHHH
Confidence 344443 5778889999999999999998653 4777777777777777777655432221111 23456777777
Q ss_pred HHHHHHHHH
Q psy14846 347 LFNQFSKLV 355 (615)
Q Consensus 347 l~~~~~~li 355 (615)
+++-...+|
T Consensus 272 lfe~va~II 280 (773)
T KOG0412|consen 272 LFEGVARII 280 (773)
T ss_pred HHHHHHHHH
Confidence 777665554
No 18
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=22.90 E-value=1.2e+03 Score=27.03 Aligned_cols=187 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHH--------HHHHHhcCC----hHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHH
Q psy14846 197 KLQIYREHFEKAYIAATESFYTVK--------AAEFLQNNG----VESYMKYADAKLHEEELRACKYLESSSSVQLLTDC 264 (615)
Q Consensus 197 ~l~~Y~~~FE~~~L~~t~~yY~~~--------s~~~l~~~~----~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~ 264 (615)
.+..|.+.||..+|++-...|... |.-+..=++ +.-|+.+..-.+..+.--....+.....+.++.+.
T Consensus 103 ~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~~~~~~~~~~~~~~~~~~~~l~d~ 182 (710)
T PF07393_consen 103 NIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCIDFFINKHEFFIDEDQLDESNGFEDEEIWEKLSDP 182 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhChhhhhhhhhccccccchhHHHHhccCc
Q ss_pred HH-HHHHHHHHHHHHHhhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHhHHhHHhhhhhhc-cCHHHHHH
Q psy14846 265 CV-TVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIIT-QDSEKYVE 342 (615)
Q Consensus 265 l~-~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~-~~~~~~v~ 342 (615)
-. ..+....++.+++.+...+.+ +..-+.++| ++....+..-++..+.+.....+....+... .+...|+.
T Consensus 183 ~~~~~~~~~~l~~~~~~i~~~i~~-e~~iI~~VF------p~~~~Vm~~fiervf~~~I~~~i~~lL~~a~~~s~~~YLr 255 (710)
T PF07393_consen 183 DSHPPINEESLDAFFEDIRDVINE-ESKIIDRVF------PNPEPVMQKFIERVFEQVIQEYIESLLEEASSISTLAYLR 255 (710)
T ss_pred ccccccchHHHHHHHHHHHHHHHH-HHHHHHHHC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHccCChh--------HHHHHHHHHHHcccCccccccccCccccCCCCCCCCCchhHHH--HHHhH
Q psy14846 343 RLLELFNQFSKLVKDAFKDDPR--------FLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELL--ANYCD 412 (615)
Q Consensus 343 ~ll~l~~~~~~li~~~F~~~~~--------f~~~l~~af~~~lN~~~~~~~~~~~~~~~~~~~~~~~~~~e~l--a~y~D 412 (615)
.+-.+|.+..+++...=..... +...++..++.++.. ++ ..|++
T Consensus 256 ~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF~~--------------------------~l~~~~Yl~ 309 (710)
T PF07393_consen 256 TLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLFEP--------------------------YLEDDEYLE 309 (710)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHHHH--------------------------HcCcchHHH
Q ss_pred Hhhc
Q psy14846 413 MLLR 416 (615)
Q Consensus 413 ~~lk 416 (615)
...+
T Consensus 310 ~E~~ 313 (710)
T PF07393_consen 310 EEKR 313 (710)
T ss_pred HHHH
No 19
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=22.61 E-value=4.7e+02 Score=25.25 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhcC---C--CChhhHHHHHHHHHHhhccCC----------CChhHHHHHHHHHHHHHHHHHHHHHhc--
Q psy14846 15 PSMRPIVLKLLQQE---P--VSQNEWQNLFYAVHVVCLWDE----------KGPSKIVDALKEDIMNFIRHAQQRVLA-- 77 (615)
Q Consensus 15 ~~L~~ai~~I~~~~---~--~~~~s~~~lY~~vy~lc~~~~----------~~~~~LY~~l~~~i~~~l~~~~~~l~~-- 77 (615)
..++.+|+.++... . ...-.+..+...+........ ...+.+-+.+.+.+..........+..
T Consensus 62 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~ 141 (214)
T PF07516_consen 62 EMIEDVIDDIVDEYIPEKDSPEEWDIEGLKDFLNQNFNLDFDISPEDLINNKDKEELKKYLFEQVEESYERKEEEIGEEQ 141 (214)
T ss_dssp HHHHHHHHHHHHHHSSSSSSSTSSCHHHHHHHHHHCSSSSSCHCSCHHSSSSTCHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHcccccCcccccHHHHHHHHHHHcCCCcchhHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 45666666666421 0 112335555555555443210 122334444444444444333222211
Q ss_pred --ccchhHHHHHHHHHHHHHHHhhccccc
Q psy14846 78 --HEEDQALLKAYIQEWSKFLAQCSYLPT 104 (615)
Q Consensus 78 --~~~~~~~L~~~~~~W~~y~~~~~~l~~ 104 (615)
.....-+|..+-..|.+|...|..|+.
T Consensus 142 ~~~~eR~ilL~~ID~~W~~HL~~m~~Lr~ 170 (214)
T PF07516_consen 142 FNEFERYILLKAIDQNWKDHLDNMDQLRE 170 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Confidence 011346799999999999998888765
No 20
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.80 E-value=1.2e+02 Score=25.67 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=34.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcccCccccccccCccccCCCCCCCCCchhHHHHHHhHHhhccC
Q psy14846 353 KLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKT 418 (615)
Q Consensus 353 ~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~y~D~~lk~~ 418 (615)
.++......+......+..||+.+++.-..... +.++.++++|+++..++..+
T Consensus 58 ~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~-------------D~P~~~~~la~~~~~~i~~~ 110 (113)
T PF02847_consen 58 KLLSHLCKRKLISKEQFQEGFEDLLESLEDLEL-------------DIPKAPEYLAKFLARLIADG 110 (113)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH-------------HSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccc-------------cchHHHHHHHHHHHHHHHcC
Confidence 344444445556677888888888875322111 23678999999999988764
No 21
>PF05261 Tra_M: TraM protein, DNA-binding; InterPro: IPR007925 The TraM protein is an essential part of the DNA transfer machinery of the conjugative resistance plasmid R1 (IncFII). On the basis of mutational analyses, it was shown that the essential transfer protein TraM has at least two functions. First, a functional TraM protein was found to be required for normal levels of transfer gene expression. Second, experimental evidence was obtained that TraM stimulates efficient site-specific single-stranded DNA cleavage at the oriT, in vivo. Furthermore, a specific interaction of the cytoplasmic TraM protein with the membrane protein TraD was demonstrated, suggesting that the TraM protein creates a physical link between the relaxosomal nucleoprotein complex and the membrane-bound DNA transfer apparatus [].; GO: 0003677 DNA binding, 0000746 conjugation; PDB: 3ON0_A 3OMY_B 1DP3_A 2G9E_A 3D8A_B 2G7O_A.
Probab=20.57 E-value=1.3e+02 Score=26.50 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCccCh-HhHHHHHHHHHhhc
Q psy14846 154 IKQRLQDSAMKLVQSERNGEAFDS-QLVIGVRESYVNLC 191 (615)
Q Consensus 154 i~~~l~~~ll~~I~~~R~g~~id~-~~l~~v~~~~~~L~ 191 (615)
+++++.+.|-+++...|..++-+. -.+-++..||++||
T Consensus 8 ~s~~v~~~I~~iVe~r~qeGA~~~dvs~SSv~smLlELG 46 (127)
T PF05261_consen 8 VSNKVLEEINDIVEERRQEGATEKDVSFSSVSSMLLELG 46 (127)
T ss_dssp --HCHHHHHHHHHHHHHCCT-TTTT--HHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 456667777888888887655432 23668899999998
No 22
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.27 E-value=2e+02 Score=24.33 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=36.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcccCccccccccCccccCCCCCCCCCchhHHHHHHhHHhhccC
Q psy14846 353 KLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKT 418 (615)
Q Consensus 353 ~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~y~D~~lk~~ 418 (615)
.++......+......+..||..+++.-.... .+.++.++++|.++..++..+
T Consensus 58 ~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~-------------~D~P~a~~~la~~~a~~v~~~ 110 (113)
T smart00544 58 VLLSRLCQANVISTKQFEKGFWRLLEDIEDLE-------------LDIPNAWRNLAEFVARLISDG 110 (113)
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHhhChhhh-------------cccccHHHHHHHHHHHHHHcC
Confidence 34444455566677888899998888632211 124578999999999888764
Done!