Query psy14846
Match_columns 615
No_of_seqs 194 out of 1005
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 22:15:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 1E-107 4E-112 935.0 52.5 577 10-615 1-609 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 3E-104 1E-108 906.7 52.9 553 7-615 56-613 (759)
3 2wzk_A Cullin-5, CUL-5; UBL co 100.0 2E-69 7E-74 575.9 41.1 375 1-384 6-384 (391)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 2.3E-67 7.8E-72 562.2 34.4 362 8-415 28-396 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 5E-65 1.7E-69 537.4 27.7 349 6-380 9-364 (364)
6 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 1.2E-63 4.1E-68 524.9 34.7 343 6-380 6-352 (354)
7 3dpl_C Cullin-5; ubiquitin, NE 100.0 1.4E-49 4.7E-54 419.8 19.9 216 400-615 3-221 (382)
8 3omy_A Protein TRAM; DNA bindi 48.6 17 0.00057 25.6 3.3 41 155-202 9-49 (52)
9 1eze_A Cholesteryl ester trans 37.8 11 0.00038 24.8 1.0 25 477-503 9-33 (38)
10 1oks_A RNA polymerase alpha su 32.6 72 0.0025 22.3 4.4 44 455-500 4-48 (56)
11 1dp3_A TRAM protein; helix-loo 29.1 17 0.00059 25.8 0.9 43 156-204 9-52 (55)
12 2q2k_A Hypothetical protein; p 28.8 28 0.00094 24.6 1.9 35 290-324 33-69 (70)
13 3on0_A Protein TRAM; DNA bindi 22.5 69 0.0024 26.9 3.5 42 154-202 8-49 (127)
14 1nkl_A NK-lysin; saposin fold, 20.6 2.4E+02 0.0082 21.2 6.2 59 403-466 6-65 (78)
15 4dhx_B Enhancer of yellow 2 tr 20.4 1.4E+02 0.0049 24.1 5.0 27 17-43 46-72 (101)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=1.2e-107 Score=935.00 Aligned_cols=577 Identities=33% Similarity=0.570 Sum_probs=527.0
Q ss_pred HHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccC-------------------------CCChhHHHHHHHHHH
Q psy14846 10 FEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWD-------------------------EKGPSKIVDALKEDI 64 (615)
Q Consensus 10 fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~-------------------------~~~~~~LY~~l~~~i 64 (615)
||++|..|++||+.|+.+++++..+||++|++||++|+++ +.+|+.||+++++++
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHH
Confidence 6899999999999999877899999999999999999984 126899999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHH
Q psy14846 65 MNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLD 144 (615)
Q Consensus 65 ~~~l~~~~~~l~~~~~~~~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~ 144 (615)
+.|+.+++..+... .++.||..|.++|.+|+.++.+|+++|+||||+||++... .|.+ +.++|+++||.
T Consensus 81 ~~~l~~~~~~~~~~-~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~------~g~~----~~~~I~~lgL~ 149 (760)
T 1ldj_A 81 KNYLTNLLKDGEDL-MDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECD------EGRK----GIYEIYSLALV 149 (760)
T ss_dssp HHHHHHHHHTTCSC-TTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-----------------CCHHHHHHH
T ss_pred HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHccccc------ccCC----CcccHHHHHHH
Confidence 99999887665443 4678999999999999999999999999999999987521 1211 23689999999
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCc------hhhhhHHhHHHHHHHHHHHHHH
Q psy14846 145 SWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPED------KLQIYREHFEKAYIAATESFYT 218 (615)
Q Consensus 145 ~f~~~v~~~i~~~l~~~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~------~l~~Y~~~FE~~~L~~t~~yY~ 218 (615)
+||++||.+++++++++++++|+++|+|+.||+++|+++++||++||.+..+ .+++|.+.||++||++|++||+
T Consensus 150 ~fr~~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~ 229 (760)
T 1ldj_A 150 TWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYT 229 (760)
T ss_dssp TTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999865433 4789999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCchHHHHHHHH
Q psy14846 219 VKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMK 298 (615)
Q Consensus 219 ~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~ 298 (615)
.+|++|++++++++||++|+.++++|.+||..||++ +|.++|.++|+++||.+|.+.|++++..||++++.++|++||+
T Consensus 230 ~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~-~t~~~l~~~~~~~Li~~~~~~l~~~~~~ll~~~~~~dL~~my~ 308 (760)
T 1ldj_A 230 RESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHE-STQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYN 308 (760)
T ss_dssp HHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCS-SSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCcHHHHHHHHHHHHHHhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHccc
Q psy14846 299 LLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVN 378 (615)
Q Consensus 299 L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN 378 (615)
|++++++|++.|+..|++||.+.|.+++....+....+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|
T Consensus 309 L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN 388 (760)
T 1ldj_A 309 LVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFIN 388 (760)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999886643333468999999999999999999999999999999999999999999
Q ss_pred CccccccccCccccCCCCCCCCCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHH
Q psy14846 379 DTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLT 458 (615)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La 458 (615)
.+.+.... .+..++||+||+|||.+||++. ++.+++|++..|++++.||+|+++||+|+++|+++||
T Consensus 389 ~~~~~~~~-----------~~~~~~~E~la~y~D~~Lkk~~--k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~La 455 (760)
T 1ldj_A 389 NNAVTKMA-----------QSSSKSPELLARYCDSLLKKSS--KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA 455 (760)
T ss_dssp SSHHHHHH-----------TSTTHHHHHHHHHHHHHHBCCS--SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCcccccc-----------ccccccHHHHHHHhHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 86432100 1246899999999999999985 6678999999999999999999999999999999999
Q ss_pred hHhcCCCCCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCCC
Q psy14846 459 RRLILDTSADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARG 537 (615)
Q Consensus 459 kRLL~~~s~s~~~E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~Vlt~~~WP~~ 537 (615)
+|||.++|.|.+.|+.||++|| +|| .+||+||++||+||..|++++..|+++..++ ...+++|+|.|||+|+||..
T Consensus 456 kRLL~~~s~s~d~E~~~i~~Lk~~~G--~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~-~~~~~~~~v~VLs~~~WP~~ 532 (760)
T 1ldj_A 456 KRLVHQNSASDDAEASMISKLKQACG--FEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS-EPLDLDFSIQVLSSGSWPFQ 532 (760)
T ss_dssp HHHHTTCBSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCCSSEEEEEEEETTTSCCC
T ss_pred HHhcCCCCCChHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCeeEEecCCCCCCCC
Confidence 9999999999999999999999 999 5999999999999999999999999987651 22367999999999999998
Q ss_pred CCCccccCChhHHHhHHHHHHHHhccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCCcCCC
Q psy14846 538 SERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL 615 (615)
Q Consensus 538 ~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~~~el 615 (615)
+..++.||++|+.+++.|++||..+|+||+|+|.|++|+|+|++.|++++|+|+||++||+|||+||+.+++|++||
T Consensus 533 -~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei 609 (760)
T 1ldj_A 533 -QSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQL 609 (760)
T ss_dssp -CCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHH
T ss_pred -CCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=3.1e-104 Score=906.73 Aligned_cols=553 Identities=24% Similarity=0.432 Sum_probs=514.3
Q ss_pred CCCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHH
Q psy14846 7 TQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAH-EEDQALL 85 (615)
Q Consensus 7 ~~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~-~~~~~~L 85 (615)
+.+||++|..|++||+.|+.+++ ...+|+++|++||++|++ ++|+.||+++++.+++|+..++..+.+. .+++.||
T Consensus 56 ~~~~e~~W~~L~~ai~~I~~~~~-~~~s~e~LY~~vy~lc~~--k~~~~LY~~l~~~~~~~l~~~~~~l~~~~~~~~~~L 132 (759)
T 2hye_C 56 DNYTQDTWRKLHEAVRAVQSSTS-IRYNLEELYQAVENLCSH--KVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFL 132 (759)
T ss_dssp CCTTTTHHHHHHHHHHTTSTTCC-CSSCHHHHHHHHHHHCCT--TTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 35679999999999999998754 557899999999999998 8899999999999999999988877542 2345899
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHHh--hHHHHHHHHH
Q psy14846 86 KAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFND--IKQRLQDSAM 163 (615)
Q Consensus 86 ~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~~--i~~~l~~~ll 163 (615)
..|.++|.+|+.++.+|+++|+||||+|+.++. +.++|+++|+.+||++||.+ ++++++++++
T Consensus 133 ~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~---------------~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL 197 (759)
T 2hye_C 133 KKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNS---------------TLPSIWDMGLELFRTHIISDKMVQSKTIDGIL 197 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCS---------------SSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCC---------------CCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 999999999999999999999999999998641 12689999999999999986 9999999999
Q ss_pred HHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy14846 164 KLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHE 243 (615)
Q Consensus 164 ~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~e 243 (615)
++|+++|+|+.||+++|+++++||++|+ +|.+.||++||++|.+||+.+|++|++++++++|+++|+.++++
T Consensus 198 ~lI~~eR~Ge~id~~llk~vi~ml~~L~--------vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~e 269 (759)
T 2hye_C 198 LLIERERSGEAVDRSLLRSLLGMLSDLQ--------VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEE 269 (759)
T ss_dssp HHHHTTTTTCCCCHHHHHHHHHHHHHTT--------CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999873 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHh
Q psy14846 244 EELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA-ECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAG 322 (615)
Q Consensus 244 E~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~-~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g 322 (615)
|.+||..||++ +|.++|.++|+++||.+|++.|++ ++..||++++.++|++||+|++++++|++.++..|++||++.|
T Consensus 270 E~~r~~~yL~~-~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g 348 (759)
T 2hye_C 270 EGDRVITYLDH-STQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFG 348 (759)
T ss_dssp THHHHTTTSCT-TTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999 899999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCccccccccCccccCCCCCCCCCc
Q psy14846 323 LADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESK 402 (615)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~~~~~~~~~~~~~~~~~~ 402 (615)
.+++... ..+..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+ ..+
T Consensus 349 ~~iv~~~-----~~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~-------------------~~~ 404 (759)
T 2hye_C 349 TAIVINP-----EKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKR-------------------PNK 404 (759)
T ss_dssp HHHHSCG-----GGTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTS-------------------CSH
T ss_pred HHHhcCc-----ccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCC-------------------CCc
Confidence 9877432 1235799999999999999999999999999999999999999963 358
Q ss_pred hhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHH-H
Q psy14846 403 CPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLR-D 481 (615)
Q Consensus 403 ~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk-~ 481 (615)
+||+||+|||.+||++. ++.+++|++..|++++.||+|+++||+|+++|+++||+|||.++|.+.|.|+.||++|| +
T Consensus 405 ~~E~la~y~D~~Lk~~~--k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~ 482 (759)
T 2hye_C 405 PAELIAKHVDSKLRAGN--KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE 482 (759)
T ss_dssp HHHHHHHHHHHHHSSCG--GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999974 56788999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCCCCCCccccCChhHHHhHHHHHHHHh
Q psy14846 482 VGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYK 561 (615)
Q Consensus 482 ~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y~ 561 (615)
|| .+||+||++||+||..|++++..|+++..+.+...+++|+|.|||+|+||.++ ..++.+|++|+.+++.|++||.
T Consensus 483 ~G--~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~~v~VLs~~~WP~~~-~~~~~lP~~l~~~~~~F~~fY~ 559 (759)
T 2hye_C 483 CG--AAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYT-PMEVHLTPEMIKLQEVFKAFYL 559 (759)
T ss_dssp TC--TTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEEEEEETTTSCCCC-CCCCCCCHHHHHHHHHHHHHHH
T ss_pred hC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEEeCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHH
Confidence 99 49999999999999999999999999876543334679999999999999984 5689999999999999999999
Q ss_pred ccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCCcCCC
Q psy14846 562 KKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL 615 (615)
Q Consensus 562 ~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~~~el 615 (615)
.+|+||+|+|.+++|+|+|++.|++++|+|+||++||+|||+||+.+++|++||
T Consensus 560 ~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei 613 (759)
T 2hye_C 560 GKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEI 613 (759)
T ss_dssp TTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHH
T ss_pred hhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHH
Confidence 999999999999999999999999999999999999999999999999998764
No 3
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=2e-69 Score=575.90 Aligned_cols=375 Identities=67% Similarity=1.082 Sum_probs=341.2
Q ss_pred CCCCCCCCCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy14846 1 MLKDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEE 80 (615)
Q Consensus 1 ~~~~~~~~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~~~ 80 (615)
|++|+++.+||++|+.|++||++|+.+++++..+||++|++||++|++++++|+.||+++++.+++|+.+++..+....+
T Consensus 6 ~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~~ 85 (391)
T 2wzk_A 6 LLKNKGSLQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQD 85 (391)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 67889999999999999999999998888999999999999999999877889999999999999999998877765445
Q ss_pred hhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHHhhHHHHHH
Q psy14846 81 DQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQD 160 (615)
Q Consensus 81 ~~~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~~i~~~l~~ 160 (615)
++.+|..|.++|.+|+.++.+|+++|+||||+||.+... .+.+..+.++|+++|+.+||++||.++++++++
T Consensus 86 ~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~--------~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~ 157 (391)
T 2wzk_A 86 DTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSS--------NKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQD 157 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC----------------CTTCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------ccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999975411 011101236999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy14846 161 SAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAK 240 (615)
Q Consensus 161 ~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~ 240 (615)
+++.+|+++|+|+.||+++|+++++||++||.+.++++++|.+.||++||++|.+||+.+|++|++++++++||++|+.+
T Consensus 158 ~ll~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~r 237 (391)
T 2wzk_A 158 SAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAK 237 (391)
T ss_dssp HHHHHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999997766678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC----CcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHH
Q psy14846 241 LHEEELRACKYLE----SSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEA 316 (615)
Q Consensus 241 l~eE~~r~~~~L~----~~~t~~~l~~~l~~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~ 316 (615)
+++|.+||+.||+ + +|.++|.++|+++||.+|.+.|++++..||++++.++|++||+|++|+++|++.|+..|++
T Consensus 238 L~eE~~R~~~yL~~~~~~-sT~~kl~~~~e~~LI~~h~~~ll~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~ 316 (391)
T 2wzk_A 238 LKEEEKRALRYLETRREC-NSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEE 316 (391)
T ss_dssp HHHHHHHHHHHSCCTTCC-SHHHHHHHHHHHHHTGGGHHHHHTTHHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHH
Confidence 9999999999999 8 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCccccc
Q psy14846 317 HIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFK 384 (615)
Q Consensus 317 ~i~~~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~ 384 (615)
||++.|.+++....+.+..+|..||+.||++|++|+.+|..||++|+.|.+++++||+.|+|.+++|.
T Consensus 317 ~I~~~G~~~v~~~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~ 384 (391)
T 2wzk_A 317 HIISAGLADMVAAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDATIFK 384 (391)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCchhhc
Confidence 99999999876554444578999999999999999999999999999999999999999999987754
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-67 Score=562.17 Aligned_cols=362 Identities=19% Similarity=0.341 Sum_probs=321.5
Q ss_pred CCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHH-HHHHHHhcccchhHHHH
Q psy14846 8 QTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIR-HAQQRVLAHEEDQALLK 86 (615)
Q Consensus 8 ~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~-~~~~~l~~~~~~~~~L~ 86 (615)
.+||++|..|++||+.|+.+. .++.+||+||++||++|++ ++|++||+++++.+++|+. .+.+.+.+. .++.||.
T Consensus 28 ~~~~~~W~~L~~ai~~I~~~~-~~~~s~eeLY~~vy~lc~~--k~g~~LY~~l~~~~~~~l~~~v~~~l~~~-~~~~~L~ 103 (410)
T 4ap2_B 28 KYVNSIWDLLKNAIQEIQRKN-NSGLSFEELYRNAYTMVLH--KHGEKLYTGLREVVTEHLINKVREDVLNS-LNNNFLQ 103 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-CTTCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTHHHHHHTT-TTSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence 579999999999999999875 4569999999999999998 8999999999999999998 677777654 3557999
Q ss_pred HHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHH--hhHHHHHHHHHH
Q psy14846 87 AYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFN--DIKQRLQDSAMK 164 (615)
Q Consensus 87 ~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~--~i~~~l~~~ll~ 164 (615)
.|.++|++|+.++.+|+++|+||||+|+.++. .++|+++|+.+||++||. ++++++++++++
T Consensus 104 ~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~----------------~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~ 167 (410)
T 4ap2_B 104 TLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN----------------VENVYNLGLIIFRDQVVRYGCIRDHLRQTLLD 167 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTT----------------CCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhHHHHhcCC----------------CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999998641 268999999999999997 799999999999
Q ss_pred HHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q psy14846 165 LVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEE 244 (615)
Q Consensus 165 ~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE 244 (615)
+|+++|+|+.||+++|+++++||++||.+ .+.+|.+.||++||++|.+||+.+|++|++++++++||++|+.++++|
T Consensus 168 lI~~eR~Ge~id~~lik~vi~ml~~Lg~~---~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE 244 (410)
T 4ap2_B 168 MIARERKGEVVDRGAIRNACQMLMILGLE---GRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEE 244 (410)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSS---SSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999854 367999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH----hhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHHHHHH
Q psy14846 245 ELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA----ECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVN 320 (615)
Q Consensus 245 ~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~----~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~ 320 (615)
.+||..||++ +|.++|.++|+++||.+|.+.|++ ++..||++++.++|++||+|++|+++|++.|+..|++||++
T Consensus 245 ~~R~~~yL~~-sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~ 323 (410)
T 4ap2_B 245 IERVMHCLDK-STEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLRE 323 (410)
T ss_dssp HHHHHHTSCG-GGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 9999999999 899999999999999999999985 89999999999999999999999999999999999999999
Q ss_pred HhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCccccccccCccccCCCCCCCC
Q psy14846 321 AGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPE 400 (615)
Q Consensus 321 ~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~~~~~~~~~~~~~~~~ 400 (615)
.|.+++....+ ..+|..||+.||++|++|+.+|..||.+|+.|.+++++||+.|+|.+
T Consensus 324 ~G~~iv~~~~~--~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~-------------------- 381 (410)
T 4ap2_B 324 QGKALVSEEGE--GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN-------------------- 381 (410)
T ss_dssp HHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHhcccc--ccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--------------------
Confidence 99998865432 35788999999999999999999999999999999999999999974
Q ss_pred CchhHHHHHHhHHhh
Q psy14846 401 SKCPELLANYCDMLL 415 (615)
Q Consensus 401 ~~~~e~la~y~D~~l 415 (615)
.+.||+||+|||..-
T Consensus 382 ~~spElla~y~D~~~ 396 (410)
T 4ap2_B 382 SRSPEYLAENLYFQS 396 (410)
T ss_dssp ---------------
T ss_pred CCCHHHHHHHccCcc
Confidence 467899999999643
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=5e-65 Score=537.44 Aligned_cols=349 Identities=19% Similarity=0.339 Sum_probs=275.0
Q ss_pred CCCCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHH-HHHHHHhcccchhHH
Q psy14846 6 GTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIR-HAQQRVLAHEEDQAL 84 (615)
Q Consensus 6 ~~~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~-~~~~~l~~~~~~~~~ 84 (615)
++.+||++|+.|++||+.|+.+. .++.+||+||++||++|++ ++|+.||+++++.+++|+. .+.+.+.+. .++.|
T Consensus 9 ~~~~~~~~W~~L~~ai~~I~~~~-~~~~s~e~LY~~vy~lc~~--k~g~~LY~~l~~~~~~~l~~~v~~~~~~~-~~~~~ 84 (364)
T 4eoz_B 9 DEKYVNSIWDLLKNAIQEIQRKN-NSGLSFEELYRNAYTMVLH--KHGEKLYTGLREVVTEHLINKVREDVLNS-LNNNF 84 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-GGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTHHHHHHTT-TTSSH
T ss_pred ChhhHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHH
Confidence 34689999999999999999775 4579999999999999998 8999999999999999998 677777654 35579
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHH--hhHHHHHHHH
Q psy14846 85 LKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFN--DIKQRLQDSA 162 (615)
Q Consensus 85 L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~--~i~~~l~~~l 162 (615)
|..|.++|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+||++||. ++++++++++
T Consensus 85 L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~----------------~~~I~~lgl~~fr~~v~~~~~i~~~l~~~l 148 (364)
T 4eoz_B 85 LQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN----------------VENVYNLGLIIFRDQVVRYGCIRDHLRQTL 148 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGT----------------CCCHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCC----------------CCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 9999999999999999999999999999998641 268999999999999996 7999999999
Q ss_pred HHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy14846 163 MKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLH 242 (615)
Q Consensus 163 l~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~ 242 (615)
+++|+++|+|+.||+++|+++++||++||.+ .+.+|.+.||++||++|.+||+.+|++|++++++++||++|+.+++
T Consensus 149 l~lI~~eR~Ge~id~~lik~~i~ml~~L~~~---~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~ 225 (364)
T 4eoz_B 149 LDMIARERKGEVVDRGAIRNACQMLMILGLE---GRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARIN 225 (364)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS---SSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999853 3679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH----hhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHHHH
Q psy14846 243 EEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA----ECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHI 318 (615)
Q Consensus 243 eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~----~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i 318 (615)
+|.+||..||++ +|.++|.++|+++||.+|.+.|++ ++..||++++.++|++||+|++|+++|++.+++.|++||
T Consensus 226 eE~~R~~~yL~~-~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I 304 (364)
T 4eoz_B 226 EEIERVMHCLDK-STEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYL 304 (364)
T ss_dssp HHHHHHHHHSCG-GGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc-ccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999 899999999999999999999985 899999999999999999999999999999999999999
Q ss_pred HHHhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCc
Q psy14846 319 VNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDT 380 (615)
Q Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~ 380 (615)
++.|.+++....+ ..+|..||+.||++|++|+.+|..||++|+.|.+++++||+.|+|.+
T Consensus 305 ~~~G~~iv~~~~~--~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 305 REQGKALVSEEGE--GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp HHTC----------------------------------------------------------
T ss_pred HHHHHHHHhCccc--cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 9999998865432 35788999999999999999999999999999999999999999963
No 6
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=1.2e-63 Score=524.93 Aligned_cols=343 Identities=19% Similarity=0.365 Sum_probs=314.4
Q ss_pred CCCCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcc-cchhHH
Q psy14846 6 GTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAH-EEDQAL 84 (615)
Q Consensus 6 ~~~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~-~~~~~~ 84 (615)
++.+||++|+.|++||+.|+.+.+ ++.+||++|++||++|++ ++|++||+++++.++.|+...+..+.+. .+++.|
T Consensus 6 ~~~~~~~~W~~L~~ai~~I~~~~~-~~~s~eeLY~~vy~lc~~--~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 82 (354)
T 4a64_A 6 PENYTDETWQKLKEAVEAIQNSTS-IKYNLEELYQAVENLCSY--KISANLYKQLRQICEDHIKAQIHQFREDSLDSVLF 82 (354)
T ss_dssp CSSSTTHHHHHHHHHHHHHHTTCC-CCSCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 447999999999999999998754 568999999999999999 8999999999999999998765554432 235689
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHH--hhHHHHHHHH
Q psy14846 85 LKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFN--DIKQRLQDSA 162 (615)
Q Consensus 85 L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~--~i~~~l~~~l 162 (615)
|+.|.++|++|+.++.+|+++|+||||+|+.+++ +.++|+++|+.+||++||. ++++++++++
T Consensus 83 L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~---------------~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~l 147 (354)
T 4a64_A 83 LKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNS---------------MLPSIWDMGLELFRAHIISDQKVQNKTIDGI 147 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSC---------------CSCCHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCC---------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999999999999999999999999998641 1268999999999999997 6999999999
Q ss_pred HHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy14846 163 MKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLH 242 (615)
Q Consensus 163 l~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~ 242 (615)
+++|+++|+|+.||+++|+++++|+..| ++|.+.||++||++|.+||+.+|++|+++.++++||++|+.+++
T Consensus 148 l~lI~~eR~Ge~id~~lik~~i~ml~~L--------~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~ 219 (354)
T 4a64_A 148 LLLIERERNGEAIDRSLLRSLLSMLSDL--------QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLE 219 (354)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHT--------TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999876 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHHHHHHH
Q psy14846 243 EEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTIL-AECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNA 321 (615)
Q Consensus 243 eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il-~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~ 321 (615)
+|.+||..||++ +|.++|.++|+++||.+|.+.|+ +++..||++++.++|++||+|++|+++|++.+++.|++||++.
T Consensus 220 eE~~R~~~yL~~-~T~~~l~~~~e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~ 298 (354)
T 4a64_A 220 EEADRLITYLDQ-TTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAF 298 (354)
T ss_dssp HHHHHHHHTSCG-GGHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHH
Confidence 999999999999 89999999999999999999987 5899999999999999999999999999999999999999999
Q ss_pred hHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCc
Q psy14846 322 GLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDT 380 (615)
Q Consensus 322 g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~ 380 (615)
|.+++... .++..||+.||++|++|+.+|..||++|+.|.+++++||+.|+|.+
T Consensus 299 G~~iv~~~-----~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~ 352 (354)
T 4a64_A 299 GSTIVINP-----EKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKR 352 (354)
T ss_dssp HHHHHHSC-----CSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC----
T ss_pred HHHHHcCc-----cchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 99987532 2567899999999999999999999999999999999999999975
No 7
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=1.4e-49 Score=419.85 Aligned_cols=216 Identities=77% Similarity=1.169 Sum_probs=198.4
Q ss_pred CCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q psy14846 400 ESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWL 479 (615)
Q Consensus 400 ~~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~L 479 (615)
+.++||+||+|||.+||++.++++.+++|++..|++++.||+|+++||+|+++|+++||+|||.++|.+.|.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 46899999999999999974335678999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC-CCCCceEEEEeecCCCCCCCCCccccCChhHHHhHHHHHH
Q psy14846 480 RDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKG-SIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVED 558 (615)
Q Consensus 480 k~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~-~~~~~~~~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~ 558 (615)
|+||+|++||+||++||+||..|++++..|+++..+.+. ..+++|+|.|||+|+||..++..++.+|++|+.+++.|++
T Consensus 83 K~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~~ 162 (382)
T 3dpl_C 83 REVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEE 162 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHHH
T ss_pred HHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHHH
Confidence 999977799999999999999999999999998754321 1257899999999999998556799999999999999999
Q ss_pred HHhccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCC--CCCCcCCC
Q psy14846 559 FYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNER--PLDRFQNL 615 (615)
Q Consensus 559 ~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~--~~~~~~el 615 (615)
||..+|+||+|+|.|++|+|+|++.+.+|+|+|+||++||+|||+||+. +++|++||
T Consensus 163 fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei 221 (382)
T 3dpl_C 163 FYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENL 221 (382)
T ss_dssp HHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHH
T ss_pred HHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHH
Confidence 9999999999999999999999999999999999999999999999986 78888764
No 8
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=48.65 E-value=17 Score=25.57 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhH
Q psy14846 155 KQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYR 202 (615)
Q Consensus 155 ~~~l~~~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~ 202 (615)
++++.+.+-+++...|...+-|. .+.++..|+++|| +.+|+
T Consensus 9 s~~v~~~I~~iVe~r~qeGA~dv-s~Ssv~smLleLG------LrVYe 49 (52)
T 3omy_A 9 NNNVYEQITDLVTIRKQEGIEEA-SLSNVSSMLLELG------LRVYM 49 (52)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTC-CHHHHHHHHHHHH------HHHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccc-cHHHHHHHHHHhh------hhhhh
Confidence 45566667777788886555332 3567889999998 66775
No 9
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=37.82 E-value=11 Score=24.79 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHcCCChhhHHHHHHHHHHHHHhH
Q psy14846 477 EWLRDVGMPADYVNKLARMFQDIKVSQ 503 (615)
Q Consensus 477 ~~Lk~~g~~~~~t~kl~~M~~D~~~S~ 503 (615)
.+++++| .....|...+|+|+.+|.
T Consensus 9 dkvke~g--~tl~eK~k~~~~~i~~Se 33 (38)
T 1eze_A 9 DKLKEFG--NTLEDKAWEVINRIKQSE 33 (38)
T ss_dssp HHHHHHT--THHHHHHHHHHHHHHTTT
T ss_pred HHHHHHH--HHHHHHHHHHHHHhhccc
Confidence 7899889 489999999999999874
No 10
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=32.58 E-value=72 Score=22.33 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=32.2
Q ss_pred HHHHhHhcCCCCCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHHHH
Q psy14846 455 AHLTRRLILDTSADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIK 500 (615)
Q Consensus 455 ~~LakRLL~~~s~s~~~E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~ 500 (615)
+-+.+|++.....+.+.-+.|+..|+ --| +.-..++..|++-+.
T Consensus 4 rsViRSvikSS~l~~~hK~~ml~LL~dikg--~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 4 RSVIRSIIKSSRLEEDRKRYLMTLLDDIKG--ANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHccc--cchHHHHHHHHHHHH
Confidence 34678888877777788888888888 445 566677777777654
No 11
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=29.11 E-value=17 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcCCccCh-HhHHHHHHHHHhhcCCCCchhhhhHHh
Q psy14846 156 QRLQDSAMKLVQSERNGEAFDS-QLVIGVRESYVNLCSNPEDKLQIYREH 204 (615)
Q Consensus 156 ~~l~~~ll~~I~~~R~g~~id~-~~l~~v~~~~~~L~~~~~~~l~~Y~~~ 204 (615)
+++.+.+-+++...|...+-+. -.+.++..||++|| +.+|+-.
T Consensus 9 ~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG------LrVYe~q 52 (55)
T 1dp3_A 9 DEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG------LRVYEAQ 52 (55)
T ss_dssp CTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT------TSHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh------HHHHHHh
Confidence 3444556666777775444211 12457788999998 4578643
No 12
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=28.75 E-value=28 Score=24.58 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhhhCCc--HHHHHHHHHHHHHHhHH
Q psy14846 290 TLKLELMMKLLDRIKDGI--TPMLQDLEAHIVNAGLA 324 (615)
Q Consensus 290 ~~~L~~ly~L~~~~~~~l--~~l~~~~~~~i~~~g~~ 324 (615)
.+|--.+|.++..++.|. ..++++++.||...|..
T Consensus 33 kedypqifdflenvprgtktahirealrryieeigen 69 (70)
T 2q2k_A 33 KEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGEN 69 (70)
T ss_dssp TTTSHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCC--
T ss_pred hhhchHHHHHHHcCCCccchHHHHHHHHHHHHHhccC
Confidence 466778899999998775 46899999999998853
No 13
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=22.49 E-value=69 Score=26.87 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhH
Q psy14846 154 IKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYR 202 (615)
Q Consensus 154 i~~~l~~~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~ 202 (615)
+++++.+.|-+++...|..++-|. .+-++..||++|| +.+|+
T Consensus 8 vs~~v~~~I~~iVe~r~qeGA~dv-s~SSv~smLlELG------LrVY~ 49 (127)
T 3on0_A 8 VNNNVYEQITDLVTIRKQEGIEEA-SLSNVSSMLLELG------LRVYM 49 (127)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTC-CHHHHHHHHHHHH------HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCcccc-cHHHHHHHHHHHh------HHHHH
Confidence 356666777788888887666332 3567899999998 55665
No 14
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=20.60 E-value=2.4e+02 Score=21.23 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=44.7
Q ss_pred hhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccC-hhHHHHHHHHHHHhHhcCCCC
Q psy14846 403 CPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQN-KDVFMRFHKAHLTRRLILDTS 466 (615)
Q Consensus 403 ~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~-Kd~F~~~Y~~~LakRLL~~~s 466 (615)
+-+++.++++.++.+. .++++++..|+++...+..+.. =+.|...|-..+.+-|..+.+
T Consensus 6 ~C~~iv~~ve~~l~~~-----~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~ 65 (78)
T 1nkl_A 6 SCRKIIQKLEDMVGPQ-----PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65 (78)
T ss_dssp HHHHHHHHHHHHHCSS-----CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4578899999999874 3789999999999887765332 247888888888887776643
No 15
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=20.35 E-value=1.4e+02 Score=24.14 Aligned_cols=27 Identities=4% Similarity=0.202 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Q psy14846 17 MRPIVLKLLQQEPVSQNEWQNLFYAVH 43 (615)
Q Consensus 17 L~~ai~~I~~~~~~~~~s~~~lY~~vy 43 (615)
++..+..+++..+..+.+|.+++..|-
T Consensus 46 vr~~~r~~i~~~g~~~vt~~~L~~~I~ 72 (101)
T 4dhx_B 46 LKAHCKEVIKEKGLEHVTVDDLVAEIT 72 (101)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence 334444444332333344555444443
Done!