Query psy14846
Match_columns 615
No_of_seqs 194 out of 1005
Neff 8.4
Searched_HMMs 13730
Date Fri Aug 16 22:16:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14846.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14846hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ldja2 a.118.17.1 (A:17-410) 100.0 2.5E-61 1.9E-65 513.8 30.7 360 10-381 1-391 (394)
2 d2hyec2 a.118.17.1 (C:55-401) 100.0 1.6E-58 1.2E-62 483.9 31.8 341 7-379 2-346 (347)
3 d1ldja3 e.40.1.1 (A:411-686) C 100.0 3.6E-46 2.6E-50 376.4 22.1 210 400-615 5-215 (276)
4 d2hyec3 e.40.1.1 (C:403-675) C 100.0 2E-45 1.5E-49 370.7 20.4 209 402-615 2-211 (273)
5 d1gpja1 a.151.1.1 (A:303-404) 30.1 84 0.0061 23.3 7.5 43 228-271 27-69 (102)
6 d1nvpb_ a.32.1.1 (B:) Large ch 21.1 91 0.0066 19.5 4.8 37 55-94 4-40 (43)
7 d2ezwa1 a.31.1.1 (A:12-61) cAM 19.7 44 0.0032 21.5 3.0 23 185-207 20-43 (50)
8 d1nh2b_ a.32.1.1 (B:) Large ch 14.9 1.4E+02 0.01 18.8 4.8 38 54-94 5-42 (46)
9 d1dp3a_ a.55.1.2 (A:) DNA-bind 14.4 26 0.0019 23.0 0.9 41 158-204 11-52 (55)
10 d1nkta2 a.172.1.1 (A:616-835) 13.8 3.3E+02 0.024 22.6 9.0 63 82-163 154-216 (220)
No 1
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.5e-61 Score=513.76 Aligned_cols=360 Identities=28% Similarity=0.502 Sum_probs=329.2
Q ss_pred HHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCC-------------------------ChhHHHHHHHHHH
Q psy14846 10 FEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEK-------------------------GPSKIVDALKEDI 64 (615)
Q Consensus 10 fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~-------------------------~~~~LY~~l~~~i 64 (615)
.|++|..|++||++|+++++++..+||++|++||++|++++. .|+.||+++++.+
T Consensus 1 ~d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (394)
T d1ldja2 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHHHHHHHH
Confidence 378999999999999988889989999999999999987421 3789999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHH
Q psy14846 65 MNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLD 144 (615)
Q Consensus 65 ~~~l~~~~~~l~~~~~~~~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~ 144 (615)
+.|+.++++.+... .++++|..|.+.|.+|+.++.+|+++|+||||+|+.+++. .|.+ +.++|+++|+.
T Consensus 81 ~~~l~~i~~~~~~~-~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~------~~~~----~~~~I~~~~l~ 149 (394)
T d1ldja2 81 KNYLTNLLKDGEDL-MDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECD------EGRK----GIYEIYSLALV 149 (394)
T ss_dssp HHHHHHHHHTTCSC-TTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-----------------CCHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccc------cccc----ccchHHHHHHH
Confidence 99999988776553 4678999999999999999999999999999999987521 1111 34789999999
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHhcCCccChHhHHHHHHHHHhhcCCCC------chhhhhHHhHHHHHHHHHHHHHH
Q psy14846 145 SWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPE------DKLQIYREHFEKAYIAATESFYT 218 (615)
Q Consensus 145 ~f~~~v~~~i~~~l~~~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~------~~l~~Y~~~FE~~~L~~t~~yY~ 218 (615)
+|++.||.+++++++++++++|+++|+|+.+|+.+|+++++|++.||.+.. ..+++|.+.||++||++|.+||+
T Consensus 150 ~fr~~v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~ 229 (394)
T d1ldja2 150 TWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYT 229 (394)
T ss_dssp TTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985432 24679999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCchHHHHHHHH
Q psy14846 219 VKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMK 298 (615)
Q Consensus 219 ~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~ 298 (615)
+++.+|++++++++|+++|+.++++|.+||+.||++ +|.+++.+.|+++||.+|.+.|.+++..||++++.++|++||+
T Consensus 230 ~~~~~~l~~~~~~eYl~~v~~~l~eE~~r~~~yl~~-~t~~~l~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~lY~ 308 (394)
T d1ldja2 230 RESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHE-STQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYN 308 (394)
T ss_dssp HHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCS-SSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCcHHHHHHHHHHHHHHhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHccc
Q psy14846 299 LLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVN 378 (615)
Q Consensus 299 L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN 378 (615)
|++++++|++.|++.|++||.+.|.+++....+...++|..||+.|+++|++|+.++..||++|+.|.+++++||+.|+|
T Consensus 309 L~~rv~~~~~~l~~~~~~~I~~~G~~~i~~~~~~~~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN 388 (394)
T d1ldja2 309 LVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFIN 388 (394)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999887766555678999999999999999999999999999999999999999999
Q ss_pred Ccc
Q psy14846 379 DTT 381 (615)
Q Consensus 379 ~~~ 381 (615)
+++
T Consensus 389 ~n~ 391 (394)
T d1ldja2 389 NNA 391 (394)
T ss_dssp SSH
T ss_pred ccc
Confidence 874
No 2
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.6e-58 Score=483.92 Aligned_cols=341 Identities=20% Similarity=0.370 Sum_probs=315.6
Q ss_pred CCCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhc-ccchhHHH
Q psy14846 7 TQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLA-HEEDQALL 85 (615)
Q Consensus 7 ~~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~-~~~~~~~L 85 (615)
..+||++|+.|++||+.|+.+++ ++.+|+++|++||++|++ ++|+.||+++++.+++|+...+.++.. ..+++++|
T Consensus 2 ~~~~e~~W~~L~~ai~~I~~~~~-~~~s~e~lY~~vy~lc~~--~~~~~LY~~l~~~l~~~~~~~~~~~~~~~~~~~~~L 78 (347)
T d2hyec2 2 DNYTQDTWRKLHEAVRAVQSSTS-IRYNLEELYQAVENLCSH--KVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFL 78 (347)
T ss_dssp CCTTTTHHHHHHHHHHTTSTTCC-CSSCHHHHHHHHHHHCCT--TTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHH
T ss_pred CchHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 46899999999999999998754 679999999999999998 899999999999999999887766643 33456799
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHHh--hHHHHHHHHH
Q psy14846 86 KAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFND--IKQRLQDSAM 163 (615)
Q Consensus 86 ~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~~--i~~~l~~~ll 163 (615)
+.|.+.|.+|..++.+|+++|+||||+|+.+++ . .++|+++|+.+|+++||.+ ++++++++++
T Consensus 79 ~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~----------~-----~~~i~~~~l~lf~~~v~~~~~~~~~l~~~ll 143 (347)
T d2hyec2 79 KKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNS----------T-----LPSIWDMGLELFRTHIISDKMVQSKTIDGIL 143 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCS----------S-----SCCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhcCC----------C-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999997641 1 2589999999999999964 9999999999
Q ss_pred HHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy14846 164 KLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHE 243 (615)
Q Consensus 164 ~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~e 243 (615)
++|+++|+|+.+|+.+++++++|+..|+ +|.+.||++||++|.+||+++|.+|++++++++|+++|+.++++
T Consensus 144 ~~I~~~R~g~~i~~~ll~~~~~~~~~l~--------~Y~~~fE~~~l~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~e 215 (347)
T d2hyec2 144 LLIERERSGEAVDRSLLRSLLGMLSDLQ--------VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEE 215 (347)
T ss_dssp HHHHTTTTTCCCCHHHHHHHHHHHHHTT--------CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhhhhh--------HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHh
Q psy14846 244 EELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA-ECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAG 322 (615)
Q Consensus 244 E~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~-~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g 322 (615)
|.+||+.||++ +|.++|.++|+++||.+|.+.|++ ++..||++++.++|++||+|+++++++++.+++.|++||.+.|
T Consensus 216 E~~r~~~~l~~-~t~~~l~~~l~~~Li~~~~~~il~~~~~~ll~~~~~~~L~~ly~L~~r~~~~~~~l~~~f~~~i~~~G 294 (347)
T d2hyec2 216 EGDRVITYLDH-STQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFG 294 (347)
T ss_dssp THHHHTTTSCT-TTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHH
Confidence 99999999999 899999999999999999998885 7999999999999999999999999999999999999999999
Q ss_pred HHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccC
Q psy14846 323 LADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVND 379 (615)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~ 379 (615)
.+++... .++..||+.|++++++|+.++..||++|+.|.+++++||+.|+|+
T Consensus 295 ~~~v~~~-----~~~~~~V~~ll~l~~k~~~li~~~F~~d~~f~~~l~~af~~~iNk 346 (347)
T d2hyec2 295 TAIVINP-----EKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINK 346 (347)
T ss_dssp HHHHSCG-----GGTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCc-----ccchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHccC
Confidence 9877432 235689999999999999999999999999999999999999996
No 3
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=3.6e-46 Score=376.41 Aligned_cols=210 Identities=40% Similarity=0.694 Sum_probs=196.8
Q ss_pred CCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q psy14846 400 ESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWL 479 (615)
Q Consensus 400 ~~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~L 479 (615)
+.++||+||+|||.++|++. ++.+++++++.+++|+.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.+|+.|
T Consensus 5 ~~~~~e~La~y~D~~lk~~~--k~~~~~~~~~~l~~i~~if~~l~~KD~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L 82 (276)
T d1ldja3 5 SSKSPELLARYCDSLLKKSS--KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKL 82 (276)
T ss_dssp TTHHHHHHHHHHHHHHBCCS--SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCcC--CCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 46899999999999999974 5567889999999999999999999999999999999999999999999999999999
Q ss_pred H-HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCCCCCCccccCChhHHHhHHHHHH
Q psy14846 480 R-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVED 558 (615)
Q Consensus 480 k-~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~ 558 (615)
+ +|| +++|++|++|++|++.|.+++.+|++...+.. ..+++|+|.|||+++||..+ ..++.+|++|+.+++.|++
T Consensus 83 k~~~g--~~~~~kl~~Ml~D~~~S~~~~~~f~~~~~~~~-~~~~~~~v~Vlt~~~WP~~~-~~~~~lP~~l~~~~~~f~~ 158 (276)
T d1ldja3 83 KQACG--FEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSE-PLDLDFSIQVLSSGSWPFQQ-SCTFALPSELERSYQRFTA 158 (276)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCSSEEEEEEEETTTSCCCC-CSCCCCCGGGHHHHHHHHH
T ss_pred HHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcCceEEEEEeeCCccCcCC-CCCccCCHHHHHHHHHHHH
Confidence 9 999 69999999999999999999999999876543 24678999999999999874 6789999999999999999
Q ss_pred HHhccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCCcCCC
Q psy14846 559 FYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL 615 (615)
Q Consensus 559 ~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~~~el 615 (615)
||+++|++|+|.|.+++|+|+|++.+++++|+|+||++||+||++||+.+++|++||
T Consensus 159 ~Y~~~~~~RkL~w~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFN~~~~~t~~ei 215 (276)
T d1ldja3 159 FYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQL 215 (276)
T ss_dssp HTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHH
T ss_pred HHHHhCCCCeEEEecCCCcEEEEEEECCCcEEEEECHHHHHHHHhhcCCCccCHHHH
Confidence 999999999999999999999999999999999999999999999999999998764
No 4
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2e-45 Score=370.68 Aligned_cols=209 Identities=32% Similarity=0.538 Sum_probs=197.0
Q ss_pred chhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHH-
Q psy14846 402 KCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLR- 480 (615)
Q Consensus 402 ~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk- 480 (615)
++||+||+|||.++|++. +..++++++..+++++.||+|++|||+|+.+|+++||+|||.+++.+.+.|+.+|++|+
T Consensus 2 ~~~e~la~y~D~~lr~~~--k~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L~~ 79 (273)
T d2hyec3 2 KPAELIAKHVDSKLRAGN--KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKH 79 (273)
T ss_dssp HHHHHHHHHHHHHHSSCG--GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 579999999999999874 55678999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCCCCCCccccCChhHHHhHHHHHHHH
Q psy14846 481 DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFY 560 (615)
Q Consensus 481 ~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y 560 (615)
+|| .++|++|++|++|++.|++++.+|++.........+++|+|.|||+++||..+ ..++.+|++++.+++.|++||
T Consensus 80 ~~g--~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~v~vLs~~~WP~~~-~~~~~lP~~l~~~~~~F~~~Y 156 (273)
T d2hyec3 80 ECG--AAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYT-PMEVHLTPEMIKLQEVFKAFY 156 (273)
T ss_dssp TTC--TTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEEEEEETTTSCCCC-CCCCCCCHHHHHHHHHHHHHH
T ss_pred HhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEEEEeeCCCCCCCC-CCCCcCCHHHHHHHHHHHHHH
Confidence 999 59999999999999999999999999987766556789999999999999884 578999999999999999999
Q ss_pred hccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCCcCCC
Q psy14846 561 KKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL 615 (615)
Q Consensus 561 ~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~~~el 615 (615)
..+|++|+|.|.+++|+|+|++.+++|+|++.||++||+||++||+.+++|+++|
T Consensus 157 ~~~~~~RkL~w~~~ls~~~l~~~~~~~~~~l~~s~~Qa~ILl~fn~~~~~t~~~i 211 (273)
T d2hyec3 157 LGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEI 211 (273)
T ss_dssp HTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHH
T ss_pred HHhCCCCEEEEecCCccEEEEEEECCCcEEEEEcHHHHHHHHHhcCCCCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999998764
No 5
>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=30.13 E-value=84 Score=23.29 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHH
Q psy14846 228 NGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVS 271 (615)
Q Consensus 228 ~~~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~l~~~LI~ 271 (615)
-.+..|=.+++..-++|.+|+..-|.. .....+++.+-.-|+.
T Consensus 27 p~I~~lr~~~e~ir~~Elekal~kl~~-~~~e~vie~l~~~l~n 69 (102)
T d1gpja1 27 RLVADVAKSLHEIKDRELERALRRLKT-GDPENVLQDFAEAYTK 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCC------CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHH
Confidence 357788899999999999998888876 4444444444444443
No 6
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.14 E-value=91 Score=19.46 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q psy14846 55 KIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSK 94 (615)
Q Consensus 55 ~LY~~l~~~i~~~l~~~~~~l~~~~~~~~~L~~~~~~W~~ 94 (615)
++|..+ |+.-+.+++....+..-++..|+.+.+.|+.
T Consensus 4 kvY~~V---IedVI~~vR~~F~~~GvDe~vL~eLk~~We~ 40 (43)
T d1nvpb_ 4 KLYRSV---IEDVINDVRDIFLDDGVDEQVLMELKTLWEN 40 (43)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 455544 4555566665555433478999999999983
No 7
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.69 E-value=44 Score=21.51 Aligned_cols=23 Identities=48% Similarity=0.855 Sum_probs=17.7
Q ss_pred HHHHhhc-CCCCchhhhhHHhHHH
Q psy14846 185 ESYVNLC-SNPEDKLQIYREHFEK 207 (615)
Q Consensus 185 ~~~~~L~-~~~~~~l~~Y~~~FE~ 207 (615)
+.+|.|| ..|++++.+.+++||+
T Consensus 20 dcIVqLCi~rPe~P~~FLreyFek 43 (50)
T d2ezwa1 20 DSIVQLCTARPERPMAFLREYFEK 43 (50)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4568888 4577888888888886
No 8
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.85 E-value=1.4e+02 Score=18.81 Aligned_cols=38 Identities=13% Similarity=0.324 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q psy14846 54 SKIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSK 94 (615)
Q Consensus 54 ~~LY~~l~~~i~~~l~~~~~~l~~~~~~~~~L~~~~~~W~~ 94 (615)
..+|..+ |+.-+.+++....+.--++..|+.+.+.|+.
T Consensus 5 ~~vY~~V---I~dVI~~vR~dF~~~Gvde~vL~eLk~~We~ 42 (46)
T d1nh2b_ 5 SRVYEII---VESVVNEVREDFENAGIDEQTLQDLKNIWQK 42 (46)
T ss_dssp HHHHHHH---HHHHHHHTHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3455544 4455555555555433478899999999983
No 9
>d1dp3a_ a.55.1.2 (A:) DNA-binding domain (fragment?) of the TraM protein {Escherichia coli [TaxId: 562]}
Probab=14.41 E-value=26 Score=22.99 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCccC-hHhHHHHHHHHHhhcCCCCchhhhhHHh
Q psy14846 158 LQDSAMKLVQSERNGEAFD-SQLVIGVRESYVNLCSNPEDKLQIYREH 204 (615)
Q Consensus 158 l~~~ll~~I~~~R~g~~id-~~~l~~v~~~~~~L~~~~~~~l~~Y~~~ 204 (615)
+.+.|-.++.+.|....-+ .-.+.++..|+++|| +.+|+-.
T Consensus 11 v~ekIn~ive~rr~eGa~~~dvS~Ss~ssMLlELG------LRVYe~Q 52 (55)
T d1dp3a_ 11 IVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG------LRVYEAQ 52 (55)
T ss_dssp HHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT------TSHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCcCcchhhHHHHHHHHh------HHHHHHH
Confidence 3344455556666433322 123567788999998 4577643
No 10
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.80 E-value=3.3e+02 Score=22.64 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHHhhHHHHHHH
Q psy14846 82 QALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDS 161 (615)
Q Consensus 82 ~~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~~i~~~l~~~ 161 (615)
..+|..+-..|.+|...|..|+.- |.-. +.|++.| +..-..-|+.+|.+ +...++..++..
T Consensus 154 ~v~L~~ID~~W~eHL~~Md~LR~g--------I~LR-------~ygQkDP---l~EYK~Eaf~lF~~-m~~~i~~~vi~~ 214 (220)
T d1nkta2 154 NVLLNVIDRKWREHLYEMDYLKEG--------IGLR-------AMAQRDP---LVEYQREGYDMFMA-MLDGMKEESVGF 214 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HGGG-------CBTTBCH---HHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhHHhHHHHHHHHHHHHH--------HHHH-------HHccCCh---HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 367999999999999988877652 2211 1346653 23444456666654 444455555544
Q ss_pred HH
Q psy14846 162 AM 163 (615)
Q Consensus 162 ll 163 (615)
++
T Consensus 215 l~ 216 (220)
T d1nkta2 215 LF 216 (220)
T ss_dssp HH
T ss_pred HH
Confidence 44
Done!