RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14846
(615 letters)
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 394
Score = 233 bits (596), Expect = 2e-71
Identities = 103/404 (25%), Positives = 183/404 (45%), Gaps = 41/404 (10%)
Query: 11 EDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLW---------------------D 49
+ W +R + ++ ++ ++++ + L+ V+ C
Sbjct: 2 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQT 61
Query: 50 EKGPSKIVDALKEDIMNFIRHAQQRVLAHEE---DQALLKAYIQEWSKFLAQCSYLPTPF 106
G + L + + F+++ +L E D+++LK Y Q+W + L
Sbjct: 62 PGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGIC 121
Query: 107 RQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLV 166
L V + + L L +W +F + +++ ++ +KL+
Sbjct: 122 AYLNRHWVRRECDEGRKG----------IYEIYSLALVTWRDCLFRPLNKQVTNAVLKLI 171
Query: 167 QSERNGEAFDSQLVIGVRESYVNLCSNPED------KLQIYREHFEKAYIAATESFYTVK 220
+ ERNGE +++L+ GV +SYV L N +D L +Y+E FE ++A TE FYT +
Sbjct: 172 EKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRE 231
Query: 221 AAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAE 280
+ EFLQ N V YMK A+A+L EE+ R + S+ L C VL+ E
Sbjct: 232 STEFLQQNPVTEYMKKAEARLLEEQRR-VQVYLHESTQDELARKCEQVLIEKHLEIFHTE 290
Query: 281 CPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKY 340
++ ++ L M L+ RI+DG+ + + LE HI N GLA + + D + Y
Sbjct: 291 FQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMY 350
Query: 341 VERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFK 384
V+ +L++ +++ LV AF +D F+ A DKA +N+ V K
Sbjct: 351 VQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 347
Score = 193 bits (491), Expect = 8e-57
Identities = 70/374 (18%), Positives = 145/374 (38%), Gaps = 36/374 (9%)
Query: 10 FEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIR 69
+D W + V + + N + L+ AV +C K + L++ + ++
Sbjct: 5 TQDTWRKLHEAVRAVQSSTSIRYN-LEELYQAVENLCSH--KVSPMLYKQLRQACEDHVQ 61
Query: 70 HAQQRVLAH-EEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNK 128
+ LK W Q + + F L+ + V ++
Sbjct: 62 AQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQN----------- 110
Query: 129 QKISAEESTVRVLMLDSWNQSIFND--IKQRLQDSAMKLVQSERNGEAFDSQLVIGVRES 186
+ ++ + L+ + I +D ++ + D + L++ ER+GEA D L+ +
Sbjct: 111 ----STLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGM 166
Query: 187 YVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEEL 246
+L Q+Y++ FE ++ T Y + +Q V Y+ + +L EE
Sbjct: 167 LSDL--------QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGD 218
Query: 247 RACKYLESSSSVQLLTDCCVTVLVSSFKNTILA-ECPKMIKMNETLKLELMMKLLDRIKD 305
R YL S+ + L C L+ IL ++ N L M +L R++
Sbjct: 219 RVITYL-DHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRG 277
Query: 306 GITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRF 365
G +LQ +I G A +I + + V+ LL+ ++ +++ F+ + RF
Sbjct: 278 GQQALLQHWSEYIKTFGTAIVIN-----PEKDKDMVQDLLDFKDKVDHVIEVCFQKNERF 332
Query: 366 LTARDKAYKNVVND 379
+ ++++ +N
Sbjct: 333 VNLMKESFETFINK 346
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 187 bits (475), Expect = 2e-55
Identities = 66/215 (30%), Positives = 112/215 (52%), Gaps = 4/215 (1%)
Query: 401 SKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRR 460
+K EL+A + D LR +K T +E+E L ++++ +++ KDVF F+K L +R
Sbjct: 1 NKPAELIAKHVDSKLRAG--NKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKR 58
Query: 461 LILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSI 520
L++ SA + E++M+ L+ A + +KL MF+D+++S+D+ FKQ + S
Sbjct: 59 LLVGKSASVDAEKSMLSKLKHE-CGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSG 117
Query: 521 GDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTI 580
+ + IL G W + + V L E+ + FY KHSGRKLQW + + +
Sbjct: 118 PIDLTVNILTMGYWPTYTP-MEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVL 176
Query: 581 TFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL 615
+ GK + V+ FQ VL +NE F+ +
Sbjct: 177 KAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEI 211
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 276
Score = 185 bits (472), Expect = 7e-55
Identities = 82/210 (39%), Positives = 122/210 (58%), Gaps = 5/210 (2%)
Query: 399 PESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLT 458
SK PELLA YCD LL+K+ SK E+E L V++V KY+++KDVF +F+ L
Sbjct: 4 SSSKSPELLARYCDSLLKKS--SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA 61
Query: 459 RRLILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKG 518
+RL+ SA + E +M+ L+ +Y +KL RMFQDI VS+DLN QFK+ + +
Sbjct: 62 KRLVHQNSASDDAEASMISKLKQA-CGFEYTSKLQRMFQDIGVSKDLNEQFKK-HLTNSE 119
Query: 519 SIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNG 578
+ +I++L++G+W + T +LP ELE FY +HSGRKL W + +S G
Sbjct: 120 PLDLDFSIQVLSSGSW-PFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKG 178
Query: 579 TITFSNEVGKYDLDVTTFQMAVLFAWNERP 608
+ + +Y L +TFQMA+L +N
Sbjct: 179 ELVTNCFKNRYTLQASTFQMAILLQYNTED 208
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 32.1 bits (72), Expect = 0.21
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 6/114 (5%)
Query: 250 KYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMN-ETLKLELMMKL-----LDRI 303
+YL S L + V + T++ ++ ++L+ + +I
Sbjct: 338 RYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQI 397
Query: 304 KDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKD 357
+ L+ + I + + A+ D YV+ +L L V +
Sbjct: 398 VAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSE 451
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type
I-alpha regulatory subunit {Cow (Bos taurus) [TaxId:
9913]}
Length = 50
Score = 27.0 bits (60), Expect = 0.72
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 183 VRESYVNLC-SNPEDKLQIYREHFEK 207
+++S V LC + PE + RE+FEK
Sbjct: 18 LKDSIVQLCTARPERPMAFLREYFEK 43
>d1hmsa_ b.60.1.2 (A:) Muscle fatty acid binding protein (m-fabp)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 27.9 bits (62), Expect = 1.8
Identities = 2/35 (5%), Positives = 13/35 (37%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
+N ++++ +G+ + + ++
Sbjct: 11 VDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKN 45
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 26.9 bits (59), Expect = 1.9
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 464 DTSADSEKEENMVEWLRDVGMPADYVNKLARM 495
+S E + + E+L + + +Y + L
Sbjct: 4 GSSGRRENHQTIQEFLERIHLQ-EYTSTLLLN 34
>d1lfoa_ b.60.1.2 (A:) Liver fatty acid binding protein {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 127
Score = 27.5 bits (61), Expect = 2.1
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
+ +EN +++ +G+P D + K + ++ +
Sbjct: 10 QSQENFEPFMKAMGLPEDLIQKGKDIKGVSEIVHE 44
>d1p6pa_ b.60.1.2 (A:) Liver basic fatty acid binding protein,
LB_FABP {Argentine common toad (Bufo arenarum) [TaxId:
38577]}
Length = 125
Score = 27.4 bits (61), Expect = 2.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
+EN +LR VG+P D + + I++ Q+
Sbjct: 9 YAQENYENFLRTVGLPEDIIKVAKDVNPVIEIEQN 43
>d1tw4a_ b.60.1.2 (A:) Liver basic fatty acid binding protein,
LB_FABP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 125
Score = 27.1 bits (60), Expect = 3.3
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
+EN E+L+ + +P D + + +++ Q
Sbjct: 9 YAQENYEEFLKALALPEDLIKMARDIKPIVEIQQK 43
>d1crba_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 134
Score = 27.1 bits (60), Expect = 3.7
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
EN E+LR + + + D ++ QD
Sbjct: 11 LSNENFEEYLRALDVNVALRKIANLLKPDKEIVQD 45
>d1ifca_ b.60.1.2 (A:) Intestinal fatty acid binding protein {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 131
Score = 26.8 bits (59), Expect = 3.9
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLN 506
++ EN +++ +G+ A + ++Q+ N
Sbjct: 9 DRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGN 45
>d1o1va_ b.60.1.2 (A:) Ileal lipid-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 127
Score = 26.7 bits (59), Expect = 4.3
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLN-YQFKQSYRGSK 517
E E+N E+++ +G+ +D + K +V QD + + Q Y G
Sbjct: 9 ESEKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGH 57
>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 26.7 bits (59), Expect = 4.7
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLN-YQFKQS 512
+ E+++++G+ A D ++ D K
Sbjct: 12 VDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTE 55
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
{Thermotoga maritima [TaxId: 2336]}
Length = 332
Score = 27.3 bits (60), Expect = 5.0
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 343 RLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFK 384
RL+ L + ++ F++ +L D V+N + V
Sbjct: 24 RLMVLHRKTQRIEHRIFREIIEYLEPGDLL---VLNVSKVIP 62
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 27.4 bits (60), Expect = 5.4
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 401 SKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVL 437
CP L + P S+R E++++L +L
Sbjct: 232 PNCPPTLYSLMTKCWAYDP-SRRPRFTELKAQLSTIL 267
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus
thermophilus [TaxId: 274]}
Length = 344
Score = 27.3 bits (60), Expect = 5.4
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 10/156 (6%)
Query: 343 RLLELFNQFSKLVKDA-FKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTG--IKTLP 399
RL+ ++ + V +D P FL D V N++ V L ++ TG ++ L
Sbjct: 27 RLMVVYREGPFRVAHKRVRDLPEFLRPGDVL---VFNESKVIPARLLARKPTGGKVEILL 83
Query: 400 ESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTR 459
+ L RK P RL + L + V ++ +R +
Sbjct: 84 VRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQ--- 140
Query: 460 RLILDTSADSEKEENMVEWLRDVGMPADYVNKLARM 495
L + E + +++ Y AR
Sbjct: 141 -GDLVAHLEEVGEVPLPPYIKAKIPMERYQTVYARR 175
>d1lpja_ b.60.1.2 (A:) Cellular retinol-binding protein IV {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 26.3 bits (58), Expect = 5.7
Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 31/127 (24%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKIL 529
+N ++ +G+ + + Q+ GDS I
Sbjct: 11 LSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQN----------------GDSFTIHTN 54
Query: 530 NAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKY 589
++ + V + E ++ ++ RK + N +T + K
Sbjct: 55 SSL----RNYFVKFKVGEEFDEDNRGLD--------NRKCKSLVIWDNDRLTC---IQKG 99
Query: 590 DLDVTTF 596
+ +
Sbjct: 100 EKKNRGW 106
>d2fefa2 a.254.1.1 (A:135-293) Hypothetical protein PA2201
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 159
Score = 26.7 bits (59), Expect = 5.7
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 79 EEDQALLKAYIQEWSKFLAQCSY 101
D L Y+Q + Q S
Sbjct: 82 GSDAQALAPYLQSQYREFFQLSP 104
>d1pprm2 a.131.1.1 (M:157-312) Peridinin-chlorophyll protein
{Dinoflagellate (Amphidinium carterae) [TaxId: 2961]}
Length = 156
Score = 26.8 bits (59), Expect = 5.8
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 283 KMIKMNETLKLELM-------MKLLDRIKDGITPMLQDLEAHIVNAGLADMIASAD 331
KMI M + K + I D A VNA L +IAS
Sbjct: 53 KMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAA--VNAALGRVIASVP 106
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 27.0 bits (59), Expect = 7.6
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 401 SKCPELLANYCDMLLRKTPLSKRLTADEIESKLRN 435
+ CP + + ++ R +E +LRN
Sbjct: 233 AGCPREMYDLMNLCWTYDV-ENRPGFAAVELRLRN 266
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 26.0 bits (57), Expect = 7.8
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLN 506
++NM ++L+ + + + D ++ N
Sbjct: 11 VSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGN 47
>d2hnxa1 b.60.1.2 (A:1-131) Adipocyte lipid-binding protein, ALBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 26.0 bits (57), Expect = 8.6
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLN-YQFKQS 512
EN +++++VG+ ++ +S + + K
Sbjct: 11 VSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSE 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.380
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,224,525
Number of extensions: 104303
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 40
Length of query: 615
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 524
Effective length of database: 1,158,166
Effective search space: 606878984
Effective search space used: 606878984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)