BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1485
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YUU|A Chain A, Solution Structure Of The First Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C, Delta
Length = 83
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 126 SKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQC 180
S K K+H +H FIA T C +C K L KQGY+CR C+ HK+C
Sbjct: 6 SGKQAKIHYIKNHEFIATFFGQPTFCSVC-KDFVWGLNKQGYKCRQCNAAIHKKC 59
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
Query: 124 RWSKKGT----KLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQ 179
R+++KG +H +H F A+ T C C GKQG++C+ C HK+
Sbjct: 20 RFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTD-FIWGFGKQGFQCQVCSFVVHKR 78
Query: 180 CHVRTETTCPHSTIQHLELNKDRIELRQQNRWSKKGTKLHIFNDHTF 226
CH +CP + D+ R SK K+H ++ TF
Sbjct: 79 CHEFVTFSCPGA---------DKGPASDDPR-SKHKFKIHTYSSPTF 115
>pdb|2ENN|A Chain A, Solution Structure Of The First C1 Domain From Human
Protein Kinase C Theta
Length = 77
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 122 KNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQC 180
+ R + K K+H H F A P T C +C L KQGY+CR C+ HK+C
Sbjct: 8 QRRGAIKQAKVHHVKCHEFTATFFPQPTFCSVC-HEFVWGLNKQGYQCRQCNAAIHKKC 65
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 104 TLENGVKKHYLIPL---SLAQKNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLAR 160
T ++GV + L L + ++N K K+H F HTF H C+ C
Sbjct: 178 TGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHW-----CEYCAN-FMW 231
Query: 161 RLGKQGYECRDCHVKCHKQCHVRTETTC 188
L QG +C DC + HKQC C
Sbjct: 232 GLIAQGVKCADCGLNVHKQCSKMVPNDC 259
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 109 VKKHYLIPLSLAQKNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYE 168
+KK ++ +A N + + T N H F T C+ C+ L R QGY
Sbjct: 494 LKKKWMEQFEMAISNIYPENATA----NGHDFQMFSFEETTSCK-ACQMLLRGTFYQGYR 548
Query: 169 CRDCHVKCHKQCHVRTETTCPHSTIQHLELNKDRIELR 206
C C HK+C R H + KD++ R
Sbjct: 549 CHRCRASAHKECLGRVPPCGRHGQDFPGTMKKDKLHRR 586
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 109 VKKHYLIPLSLAQKNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYE 168
+KK ++ +A N + + T N H F T C+ C+ L R QGY
Sbjct: 303 LKKKWMEQFEMAISNIYPENATA----NGHDFQMFSFEETTSCK-ACQMLLRGTFYQGYR 357
Query: 169 CRDCHVKCHKQC 180
C C HK+C
Sbjct: 358 CHRCRASAHKEC 369
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 109 VKKHYLIPLSLAQKNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYE 168
+KK ++ +A N + + T N H F T C+ C+ L R QGY
Sbjct: 322 LKKKWMEQFEMAISNIYPENATA----NGHDFQMFSFEETTSCK-ACQMLLRGTFYQGYR 376
Query: 169 CRDCHVKCHKQC 180
C C HK+C
Sbjct: 377 CYRCRAPAHKEC 388
>pdb|2ROW|A Chain A, The C1 Domain Of Rock Ii
Length = 84
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRL-GKQGYECRDCHVKCHKQ 179
H FI T C+ C KPL ECR CH+KCHK
Sbjct: 25 HEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKD 67
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 131 KLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
K H F HTF H C+ C L QG C DC + HKQC C
Sbjct: 211 KTHNFKVHTFRGPHW-----CEYCAN-FMWGLIAQGVRCSDCGLNVHKQCSKHVPNDC 262
>pdb|2E73|A Chain A, Solution Structure Of The Phorbol EstersDIACYLGLYCEROL
Binding Domain Of Protein Kinase C Gamma
Length = 77
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 136 NDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189
+ H F A+ T C C +GKQG +C+ C H++CH CP
Sbjct: 6 SGHKFTARFFKQPTFCSHC-TDFIWGIGKQGLQCQVCSFVVHRRCHEFVTFECP 58
>pdb|1Y8F|A Chain A, Solution Structure Of The Munc13-1 C1-domain
Length = 66
Score = 31.6 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 155 CKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
C+ L + +QG C +C VKCH++C C
Sbjct: 30 CEGLLWGIARQGMRCTECGVKCHEKCQDLLNADC 63
>pdb|2FNF|X Chain X, C1 Domain Of Nore1
Length = 72
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 138 HTFIAKHLPGGT-VCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
H F+ L GG C +C R + +Q C +C CH +C + C
Sbjct: 24 HRFVELALRGGPGWCDLC----GREVLRQALRCANCKFTCHSECRSLIQLDC 71
>pdb|1RFH|A Chain A, Solution Structure Of The C1 Domain Of Nore1, A Novel Ras
Effector
Length = 59
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 138 HTFIAKHLPGGT-VCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
H F+ L GG C +C R + +Q C +C CH +C + C
Sbjct: 11 HRFVELALRGGPGWCDLC----GREVLRQALRCANCKFTCHSECRSLIQLDC 58
>pdb|4B6D|A Chain A, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|B Chain B, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|C Chain C, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|D Chain D, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|E Chain E, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|F Chain F, Structure Of The Atypical C1 Domain Of Mgcracgap
Length = 61
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 155 CKPLARRL--GKQGYECRDCHVKCHKQCHVRTETTC 188
C P +R+ GK +CRDC V H +C R C
Sbjct: 22 CVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPC 57
>pdb|3G56|A Chain A, Structure Of The Macrolide Biosensor Protein, Mphr(A)
pdb|3G56|B Chain B, Structure Of The Macrolide Biosensor Protein, Mphr(A)
pdb|3FRQ|A Chain A, Structure Of The Macrolide Biosensor Protein, Mphr(a),
With Erythromcyin
pdb|3FRQ|B Chain B, Structure Of The Macrolide Biosensor Protein, Mphr(a),
With Erythromcyin
Length = 195
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 77 SSLSEASGVSGASTRTYFNEASTLVLETLENGVK--KHYL--IPLSLAQKNRWS 126
S +++ G+S A+ F TL++ +E GV+ +HYL IP+ + W
Sbjct: 32 SGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQVRHYLNAIPIGAGPQGLWE 85
>pdb|3ZEY|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 143
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 203 IELRQQNRWSKKGTKLHIFNDHTFIAK 229
+ LR++NRW+ KG K HTF+A+
Sbjct: 14 VRLRRKNRWADKGWK----KSHTFVAQ 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,682,095
Number of Sequences: 62578
Number of extensions: 249312
Number of successful extensions: 459
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 30
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)