Query psy1485
Match_columns 252
No_of_seqs 258 out of 1002
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 22:20:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfq_A PKC-B, PKC-beta, protei 99.8 5.6E-21 1.9E-25 189.3 2.2 106 128-239 28-134 (674)
2 2enn_A NPKC-theta, protein kin 99.8 2.6E-19 8.9E-24 134.1 5.8 68 123-191 9-76 (77)
3 2yuu_A NPKC-delta, protein kin 99.8 5.2E-19 1.8E-23 133.9 6.1 71 125-196 5-75 (83)
4 3uej_A NPKC-delta, protein kin 99.7 2.6E-18 9E-23 124.3 2.6 61 130-191 2-62 (65)
5 2enz_A NPKC-theta, protein kin 99.7 1.3E-17 4.5E-22 120.7 4.8 60 130-190 5-64 (65)
6 2db6_A SH3 and cysteine rich d 99.7 2.1E-17 7.3E-22 122.8 3.3 62 130-192 10-72 (74)
7 1y8f_A UNC-13 homolog A, MUNC1 99.6 6.4E-17 2.2E-21 117.5 3.6 58 132-190 8-65 (66)
8 1ptq_A Protein kinase C delta 99.6 6.9E-17 2.4E-21 110.5 3.4 50 138-188 1-50 (50)
9 2eli_A Protein kinase C alpha 99.6 1.6E-16 5.6E-21 120.9 5.4 61 133-194 13-73 (85)
10 2row_A RHO-associated protein 99.6 8.7E-17 3E-21 123.0 3.0 61 130-191 17-82 (84)
11 1faq_A RAF-1; transferase, ser 99.5 6.9E-15 2.4E-19 101.4 3.8 51 135-190 1-51 (52)
12 4b6d_A RAC GTPase-activating p 99.5 2.5E-14 8.4E-19 103.2 4.7 58 132-191 3-60 (61)
13 1rfh_A RAS association (ralgds 99.5 1.4E-14 4.9E-19 103.3 2.2 53 133-189 6-59 (59)
14 2fnf_X Putative RAS effector N 99.4 3.8E-14 1.3E-18 105.1 4.0 52 134-189 20-72 (72)
15 1kbe_A Kinase suppressor of RA 99.1 2E-11 7E-16 84.5 3.8 45 136-186 3-47 (49)
16 3cxl_A N-chimerin; SH2, RHO-GA 99.1 6.7E-12 2.3E-16 120.0 0.7 92 134-230 206-297 (463)
17 3ky9_A Proto-oncogene VAV; cal 99.1 2.1E-11 7.3E-16 119.2 4.2 60 133-194 514-573 (587)
18 2vrw_B P95VAV, VAV1, proto-onc 99.1 4.5E-11 1.5E-15 111.3 4.2 58 134-193 343-400 (406)
19 3pfq_A PKC-B, PKC-beta, protei 98.7 5.7E-09 2E-13 103.3 4.6 56 135-191 100-155 (674)
20 1vd2_A Protein kinase C, IOTA 98.4 5E-08 1.7E-12 75.2 0.0 53 43-106 31-88 (89)
21 1r79_A Diacylglycerol kinase, 97.9 7.1E-06 2.4E-10 62.4 3.2 58 135-192 25-82 (84)
22 2enz_A NPKC-theta, protein kin 97.1 0.0002 6.9E-09 51.0 2.4 41 200-240 4-45 (65)
23 2eli_A Protein kinase C alpha 96.5 0.0015 5E-08 49.1 2.8 38 203-240 12-50 (85)
24 1rfh_A RAS association (ralgds 96.3 0.0016 5.4E-08 45.8 2.1 34 205-240 7-41 (59)
25 2fnf_X Putative RAS effector N 96.3 0.002 6.7E-08 47.2 2.5 34 205-240 20-54 (72)
26 1y8f_A UNC-13 homolog A, MUNC1 95.7 0.0031 1.1E-07 44.9 1.3 38 203-240 8-46 (66)
27 1ptq_A Protein kinase C delta 95.5 0.0053 1.8E-07 40.9 1.9 32 209-240 1-33 (50)
28 1faq_A RAF-1; transferase, ser 95.2 0.0059 2E-07 41.1 1.4 30 208-240 3-32 (52)
29 3uej_A NPKC-delta, protein kin 95.2 0.0075 2.6E-07 42.7 1.8 34 207-240 8-42 (65)
30 2yuu_A NPKC-delta, protein kin 95.2 0.0076 2.6E-07 44.8 1.8 39 202-240 11-50 (83)
31 2db6_A SH3 and cysteine rich d 94.7 0.0091 3.1E-07 43.5 1.2 39 202-240 11-50 (74)
32 1kbe_A Kinase suppressor of RA 94.7 0.012 4.1E-07 40.2 1.6 35 206-244 2-36 (49)
33 2enn_A NPKC-theta, protein kin 94.5 0.013 4.5E-07 43.0 1.7 36 205-240 20-56 (77)
34 2row_A RHO-associated protein 93.9 0.019 6.4E-07 43.5 1.4 27 204-230 20-46 (84)
35 3cxl_A N-chimerin; SH2, RHO-GA 93.1 0.048 1.6E-06 51.8 3.1 39 202-240 203-242 (463)
36 4b6d_A RAC GTPase-activating p 91.4 0.058 2E-06 38.2 1.1 36 205-240 5-40 (61)
37 1v5n_A PDI-like hypothetical p 90.6 0.18 6.2E-06 38.0 3.2 44 138-186 38-81 (89)
38 1r79_A Diacylglycerol kinase, 88.5 0.39 1.3E-05 36.1 3.6 48 186-236 3-52 (84)
39 3nw0_A Non-structural maintena 72.9 1.2 4.3E-05 38.9 1.5 33 147-184 179-211 (238)
40 2ct0_A Non-SMC element 1 homol 68.8 1.6 5.6E-05 31.7 1.1 34 146-184 13-46 (74)
41 2csz_A Synaptotagmin-like prot 64.4 3.1 0.00011 30.8 1.9 37 147-184 24-60 (76)
42 2kkc_A Sequestosome-1; P62, PB 63.6 1 3.6E-05 35.0 -0.9 35 45-84 49-88 (102)
43 2vrw_B P95VAV, VAV1, proto-onc 62.7 3 0.0001 38.1 1.9 33 206-238 344-377 (406)
44 3ky9_A Proto-oncogene VAV; cal 55.6 4.5 0.00016 39.1 1.9 34 206-239 516-550 (587)
45 2ktr_A Sequestosome-1; autopha 55.2 1.8 6.1E-05 34.5 -0.9 37 44-85 63-104 (117)
46 1zbd_B Rabphilin-3A; G protein 52.3 6.7 0.00023 31.5 2.1 38 147-185 54-91 (134)
47 2zet_C Melanophilin; complex, 51.2 8.5 0.00029 31.6 2.6 38 147-185 67-104 (153)
48 1wff_A Riken cDNA 2810002D23 p 46.4 16 0.00054 27.5 3.2 38 148-189 25-62 (85)
49 1wj6_A KIAA0049 protein, RSGI 44.2 3.8 0.00013 31.9 -0.5 49 46-106 44-94 (101)
50 1wfh_A Zinc finger (AN1-like) 37.9 26 0.00089 25.0 3.1 25 147-176 14-38 (64)
51 2bkf_A Zinc-finger protein NBR 36.5 3.7 0.00013 31.2 -1.7 47 46-104 36-84 (87)
52 1f62_A Transcription factor WS 34.0 16 0.00054 23.8 1.3 31 149-182 1-31 (51)
53 1wfl_A Zinc finger protein 216 33.1 32 0.0011 25.2 2.9 24 148-176 25-48 (74)
54 1wil_A KIAA1045 protein; ring 32.6 18 0.00062 27.4 1.6 33 148-184 15-47 (89)
55 1weo_A Cellulose synthase, cat 31.9 20 0.00069 27.4 1.8 42 147-190 15-63 (93)
56 1wg2_A Zinc finger (AN1-like) 30.0 43 0.0015 23.9 3.1 25 147-176 14-38 (64)
57 1x4w_A Hypothetical protein FL 29.0 28 0.00096 25.0 2.0 27 147-176 14-41 (67)
58 2yt5_A Metal-response element- 28.7 31 0.0011 23.5 2.2 35 148-183 6-40 (66)
59 3qt1_I DNA-directed RNA polyme 27.1 38 0.0013 27.1 2.8 32 145-176 21-56 (133)
60 1wfp_A Zinc finger (AN1-like) 26.1 52 0.0018 24.1 3.1 24 148-176 25-48 (74)
61 1wev_A Riken cDNA 1110020M19; 26.0 36 0.0012 25.0 2.3 34 148-182 16-49 (88)
62 1we9_A PHD finger family prote 22.5 58 0.002 21.9 2.7 36 147-184 5-40 (64)
63 1dl6_A Transcription factor II 21.5 48 0.0016 22.6 2.0 33 145-178 8-42 (58)
64 2ku3_A Bromodomain-containing 20.9 32 0.0011 24.4 1.1 37 146-183 14-50 (71)
No 1
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.80 E-value=5.6e-21 Score=189.29 Aligned_cols=106 Identities=23% Similarity=0.406 Sum_probs=23.7
Q ss_pred cCcceeecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCCcccccccchhhhcccc
Q psy1485 128 KGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQHLELNKDRIELRQ 207 (252)
Q Consensus 128 k~~klh~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~s~~~~el~~~r~~ir~ 207 (252)
+.+++|.+++|.|.+++|.+||||++|+++|| |+++|||+|.+|+++||++|+.+|+..|++...... ....++
T Consensus 28 ~~~~~~~~~~H~f~~~~~~~p~~C~~C~~~i~-g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~-----~~~~~~ 101 (674)
T 3pfq_A 28 RQKNVHEVKNHKFTARFFKQPTFCSHCTDFIW-GFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPA-----SDDPRS 101 (674)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCcccCCceEEeeeCCCCCcccccccccc-ccCCceeECCCCCCCcChhhcCcCcccCCCcccccc-----cccccC
Confidence 34578999999999999999999999999997 999999999999999999999999999988765332 234568
Q ss_pred ccccccCCccccccccccccccc-cCCcccccC
Q psy1485 208 QNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNS 239 (252)
Q Consensus 208 PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~ 239 (252)
+|+|..++|..|+||+||...+. +...+|+|.
T Consensus 102 ~h~~~~~~~~~~~~C~~C~~~l~g~~~qg~~C~ 134 (674)
T 3pfq_A 102 KHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCD 134 (674)
T ss_dssp CCCCCEECCSSCCCCSSSCSCCBBSSSCEECCS
T ss_pred CcceeecCCCCCCCCCccccccchhhcCccccc
Confidence 99999999999999999964322 222455554
No 2
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-19 Score=134.06 Aligned_cols=68 Identities=35% Similarity=0.670 Sum_probs=62.9
Q ss_pred ccccccCcceeecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCC
Q psy1485 123 NRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHS 191 (252)
Q Consensus 123 ~~~~~k~~klh~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~ 191 (252)
.+++.|+++++..++|.|.+++|..||+|++|.++|| |+++|||+|++|+++||++|+.+|+.+|.+.
T Consensus 9 r~ga~r~~~~~~~~~H~F~~~~f~~pt~C~~C~~~lw-Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~ 76 (77)
T 2enn_A 9 RRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVW-GLNKQGYQCRQCNAAIHKKCIDKVIAKCTGS 76 (77)
T ss_dssp CCCCCCCCCCEESSSCEEEEECCSSCEECSSSCCEEC-CTTCCEEECSSSCCEEESGGGSSCCSCCCCC
T ss_pred cCccccccccccCCCCccEEEcCCCCcCccccChhhc-cccccccCcCCCCCcCCHhHHhhCcCCCCCC
Confidence 3455567799999999999999999999999999997 9999999999999999999999999999875
No 3
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-19 Score=133.94 Aligned_cols=71 Identities=32% Similarity=0.614 Sum_probs=65.3
Q ss_pred ccccCcceeecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCCccccc
Q psy1485 125 WSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQHL 196 (252)
Q Consensus 125 ~~~k~~klh~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~s~~~~ 196 (252)
.+.++.++|.+++|.|.+++|.+|++|++|+++|| |+++|||+|.+|+++||++|+.+|+..|......+.
T Consensus 5 ~a~r~~k~~~~~~H~F~~~~~~~pt~C~~C~~~lw-Gl~kqg~~C~~C~~~~Hk~C~~~v~~~C~~~~~~~~ 75 (83)
T 2yuu_A 5 SSGKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVW-GLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANSR 75 (83)
T ss_dssp CCCCCCCEECGGGCCEEEECCSSCCCCSSSCCCCC-SSSCCEEEETTTCCEECTTGGGTCCSCCSSCCCCCS
T ss_pred cccchhhCcccCCCceEeEeCCCCcChhhcChhhc-cccccccccCCcCCeeChhhhhhCCCcCCCccccCc
Confidence 34567889999999999999999999999999997 999999999999999999999999999998877553
No 4
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=99.70 E-value=2.6e-18 Score=124.28 Aligned_cols=61 Identities=26% Similarity=0.547 Sum_probs=57.7
Q ss_pred cceeecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCC
Q psy1485 130 TKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHS 191 (252)
Q Consensus 130 ~klh~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~ 191 (252)
.+++.+++|.|.+++|.+|++|++|+++|| |+++|||+|.+|+++||++|+.+|+.+|+..
T Consensus 2 ~~~~~~~~H~F~~~~~~~pt~C~~C~~~l~-Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~~ 62 (65)
T 3uej_A 2 SRRASVGSHRFKVYNYMSPTFCDHCGSLLW-GLVKQGLKCEDCGMNVHHKCREKVANLCEFI 62 (65)
T ss_dssp CCCEEEEECCEEEECCSSCCBCTTTCCBCC-SSSSCEEEETTTCCEECHHHHTTSCSEEEEE
T ss_pred ccceEeCCceEEeEeCCCCCcccccChhhh-ccCceeeECCCCCCeEchhHhhhCCCcCCCc
Confidence 467899999999999999999999999997 9999999999999999999999999999754
No 5
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=120.71 Aligned_cols=60 Identities=25% Similarity=0.530 Sum_probs=56.0
Q ss_pred cceeecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCC
Q psy1485 130 TKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPH 190 (252)
Q Consensus 130 ~klh~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~ 190 (252)
.+++...+|.|.+++|.+||+|++|+++|| |+++|||+|++|+++||++|+.+|+..|+.
T Consensus 5 ~~~~~~~~H~F~~~~~~~pt~C~~C~~~l~-Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 64 (65)
T 2enz_A 5 SSGKIDMPHRFKVYNYKSPTFCEHCGTLLW-GLARQGLKCDACGMNVHHRCQTKVANLCGI 64 (65)
T ss_dssp CCCCCCCCCCEEECCCCSCCBCSSSCCBCC-CSSSCSEEESSSCCEECTTTTTTSCSCTTT
T ss_pred ccCCCCCCCccEeEcCCCCcCchhcChhhe-ecCCcccccCCCCCccCHhHHhhCcCcCCC
Confidence 356677899999999999999999999997 999999999999999999999999999974
No 6
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-17 Score=122.77 Aligned_cols=62 Identities=23% Similarity=0.548 Sum_probs=57.5
Q ss_pred cceeecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccc-cCCCCc
Q psy1485 130 TKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTET-TCPHST 192 (252)
Q Consensus 130 ~klh~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~-~C~~~s 192 (252)
.+++...+|.|++++|.+||+|++|+++|| |+++|||+|++|+++||++|+.+|+. +|.+..
T Consensus 10 ~k~~~~~~H~F~~~~f~~pt~C~~C~~~lw-Gl~kqG~~C~~C~~~~Hk~C~~~v~~~~C~~~~ 72 (74)
T 2db6_A 10 PKLVNDKPHKFKDHFFKKPKFCDVCARMIV-LNNKFGLRCKNCKTNIHEHCQSYVEMQRCSGPS 72 (74)
T ss_dssp CCCSCSSBCCEEEEECSSCEECSSSCCEEC-HHHHEEEEESSSCCEECTTTTGGGSSSBCCCCC
T ss_pred cccccCCCCceEEeeCCCCcCchhcChhhc-cccCCccccCCCCCccChhHHhhCCCCcCCCCC
Confidence 467788999999999999999999999997 99999999999999999999999996 698754
No 7
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=99.64 E-value=6.4e-17 Score=117.53 Aligned_cols=58 Identities=28% Similarity=0.477 Sum_probs=50.2
Q ss_pred eeecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCC
Q psy1485 132 LHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPH 190 (252)
Q Consensus 132 lh~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~ 190 (252)
+....+|.|.+++|.+||+|++|+++|| |+.+|||+|++|+++||++|+.+|+.+|.+
T Consensus 8 ~~~~~~H~F~~~~~~~pt~C~~C~~~l~-Gl~~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 65 (66)
T 1y8f_A 8 GGGGIQHNFEVWTATTPTYCYECEGLLW-GIARQGMRCTECGVKCHEKCQDLLNADCKL 65 (66)
T ss_dssp -----CCCEEEEECSSCCCCTTTCCCCC-SSCCEEEEETTTCCEECTTHHHHSCCCC--
T ss_pred CCCCCCcccEeeeCCCCcChhhcChhhc-ccCcceeEcCCCCCeeCHHHHhhCcCcCCC
Confidence 3456799999999999999999999997 999999999999999999999999999975
No 8
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=99.64 E-value=6.9e-17 Score=110.52 Aligned_cols=50 Identities=32% Similarity=0.679 Sum_probs=48.5
Q ss_pred CeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccC
Q psy1485 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188 (252)
Q Consensus 138 H~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C 188 (252)
|.|.+++|.+|++|++|+++|| |+++|||+|++|++++|++|+.+|+..|
T Consensus 1 H~F~~~~~~~pt~C~~C~~~l~-g~~~qg~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T 1ptq_A 1 HRFKVYNYMSPTFCDHCGSLLW-GLVKQGLKCEDCGMNVHHKCREKVANLC 50 (50)
T ss_dssp CCEEEECCSSCCBCTTTCCBCC-SSSSCEEEETTTCCEECHHHHTTSCSCC
T ss_pred CCCEeecCCCCCCcCCCCceee-ccCCccCEeCCCCCeECHHHhhhcCCCC
Confidence 8999999999999999999997 9999999999999999999999999887
No 9
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=120.86 Aligned_cols=61 Identities=26% Similarity=0.524 Sum_probs=56.4
Q ss_pred eecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCCccc
Q psy1485 133 HIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQ 194 (252)
Q Consensus 133 h~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~s~~ 194 (252)
....+|.|.+++|.+|++|++|+++|| |+.+|||+|.+|+++||++|+.+|+..|......
T Consensus 13 ~~~~~H~F~~~~~~~pt~C~~C~~~l~-Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~~e 73 (85)
T 2eli_A 13 DPRSKHKFKIHTYGSPTFCDHCGSLLY-GLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTE 73 (85)
T ss_dssp CTTTSCCCEEECCSSCCBCSSSCCBCC-CSSSCEEECSSSCCEEETTTTTTSCSCCCCCCCC
T ss_pred CCCCCcccEeeeCCCCcCCcccCcccc-ccccCCCcCCCcCCccCHhHHhhcCCcCCcchhh
Confidence 456799999999999999999999997 9999999999999999999999999999876553
No 10
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.63 E-value=8.7e-17 Score=123.05 Aligned_cols=61 Identities=33% Similarity=0.589 Sum_probs=56.4
Q ss_pred cceeecCCCeEEEEecCCCCcCCCCCCccccccccc--ccccCCccccccccccc---cccccCCCC
Q psy1485 130 TKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQ--GYECRDCHVKCHKQCHV---RTETTCPHS 191 (252)
Q Consensus 130 ~klh~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQ--GyqC~~Ck~~cHKKC~~---~V~~~C~~~ 191 (252)
..+....+|.|.+++|.+||+|++|+++|| |+++| ||+|++|+++|||+|+. .|+..|...
T Consensus 17 ~~~~~~~~H~F~~~~~~~PT~Cd~C~~~lW-Gl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~~ 82 (84)
T 2row_A 17 SNYICHKGHEFIPTLYHFPTNCEACMKPLW-HMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVY 82 (84)
T ss_dssp CCCEEETTEEEEEECCSSCEECSSSSSEEC-CSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCSTT
T ss_pred cceEEcCCcceEeEcCCCCcchhhcCHhhh-ccccCCCCCEecCCCCccchhHhCCccccccccCcC
Confidence 456788999999999999999999999997 99998 99999999999999999 799999753
No 11
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=99.51 E-value=6.9e-15 Score=101.40 Aligned_cols=51 Identities=29% Similarity=0.717 Sum_probs=48.5
Q ss_pred cCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCC
Q psy1485 135 FNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPH 190 (252)
Q Consensus 135 ~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~ 190 (252)
+++|.|.+++|.+|++|++|+++|| |||+|++|++++|++|..+|+.+|.+
T Consensus 1 ~~~H~F~~~~~~~pt~C~~C~~~l~-----qG~~C~~C~~~~H~~C~~~v~~~C~~ 51 (52)
T 1faq_A 1 LTTHNFARKTFLKLAFCDICQKFLL-----NGFRCQTCGYKFHEHCSTKVPTMCVD 51 (52)
T ss_dssp CCCCCCEEECCSSCEECTTSSSEEC-----SEEECTTTTCCBCSTTSSSSSSCCCC
T ss_pred CCCceeEeEeCCCCcCCCCcccccc-----cCCEeCCCCCeEChhHHhhCcCcCCC
Confidence 4689999999999999999999996 99999999999999999999999975
No 12
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=99.48 E-value=2.5e-14 Score=103.16 Aligned_cols=58 Identities=31% Similarity=0.654 Sum_probs=52.6
Q ss_pred eeecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCC
Q psy1485 132 LHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHS 191 (252)
Q Consensus 132 lh~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~ 191 (252)
+-...+|+|++++|.+|++|++|++.| ++++|||+|.+|++.||++|+..++.+|...
T Consensus 3 ~~~~~~H~F~~kt~~~~~~C~~Cg~~i--~~gkq~~kC~dC~~~cH~~C~~~~~~~C~p~ 60 (61)
T 4b6d_A 3 LGSMRLHDFVSKTVIKPESCVPCGKRI--KFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 60 (61)
T ss_dssp EECBCCCCEEEEECCSCEECTTTCCEE--CTTCEEEEESSSSCEECGGGGGGSCSSCCCC
T ss_pred CCcccceeEEeeeccCCcccccccCEE--EEeeEeeECCCCCCeEchhHhhcCCCCCCCC
Confidence 345679999999999999999999977 4899999999999999999999999999763
No 13
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=99.46 E-value=1.4e-14 Score=103.27 Aligned_cols=53 Identities=23% Similarity=0.626 Sum_probs=49.2
Q ss_pred eecCCCeEEE-EecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCC
Q psy1485 133 HIFNDHTFIA-KHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189 (252)
Q Consensus 133 h~~~gH~F~a-~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~ 189 (252)
....+|.|.+ ++|.+||+|++|+++| ++|||+|++|+++||++|+.+|+..|.
T Consensus 6 ~~~~~H~F~~~~~~~~pt~C~~C~~~i----~kqg~kC~~C~~~cH~kC~~~v~~~C~ 59 (59)
T 1rfh_A 6 ERGEGHRFVELALRGGPGWCDLCGREV----LRQALRCANCKFTCHSECRSLIQLDCR 59 (59)
T ss_dssp CCCSSCCCEECCCSSCCEECTTTCSEE----CSCCEECTTTSCEECHHHHTTCCCCCC
T ss_pred cCCCCCcCeeeeccCCCeEchhcchhh----hhCccEeCCCCCeEehhhhhhCcCCCC
Confidence 4567999999 9999999999999988 389999999999999999999999984
No 14
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=99.45 E-value=3.8e-14 Score=105.07 Aligned_cols=52 Identities=23% Similarity=0.636 Sum_probs=48.5
Q ss_pred ecCCCeEEE-EecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCC
Q psy1485 134 IFNDHTFIA-KHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189 (252)
Q Consensus 134 ~~~gH~F~a-~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~ 189 (252)
...+|.|.+ ++|.+||+|++|+++| ++|||+|.+|+++||++|+.+|+..|.
T Consensus 20 ~~~~H~F~~~~~~~~pt~C~~C~~~l----~~qG~kC~~C~~~cHkkC~~~V~~~C~ 72 (72)
T 2fnf_X 20 RGEGHRFVELALRGGPGWCDLCGREV----LRQALRCANCKFTCHSECRSLIQLDCR 72 (72)
T ss_dssp GCSSCCCEECCCCSSCCBCTTTSSBC----SSCCEECTTSSCEECTGGGGGCCSCCC
T ss_pred cCCCCccceeecCCCCcchhhhhHHH----HhCcCccCCCCCeechhhhccCcCCCC
Confidence 457999999 9999999999999988 489999999999999999999999984
No 15
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=99.15 E-value=2e-11 Score=84.47 Aligned_cols=45 Identities=31% Similarity=0.799 Sum_probs=41.0
Q ss_pred CCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccc
Q psy1485 136 NDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTET 186 (252)
Q Consensus 136 ~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~ 186 (252)
.+|+|..++|. +++|++|+++|| |||+|++|+++||++|..+||.
T Consensus 3 i~HrF~~~t~~-~t~C~~C~k~i~-----~G~kC~~Ck~~cH~kC~~~vp~ 47 (49)
T 1kbe_A 3 VTHRFSTKSWL-SQVCNVCQKSMI-----FGVKCKHCRLKCHNKCTKEAPA 47 (49)
T ss_dssp CCCCEEEECCS-SCCCSSSCCSSC-----CEEEETTTTEEESSSCTTTSCC
T ss_pred CCcccCccCCC-CcCccccCceeE-----CcCCCCCCCCccchhhcCcCCC
Confidence 58999999998 599999999997 6899999999999999997764
No 16
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=99.13 E-value=6.7e-12 Score=120.02 Aligned_cols=92 Identities=22% Similarity=0.312 Sum_probs=67.2
Q ss_pred ecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCCcccccccchhhhcccccccccc
Q psy1485 134 IFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQHLELNKDRIELRQQNRWSK 213 (252)
Q Consensus 134 ~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~s~~~~el~~~r~~ir~PHrf~~ 213 (252)
...+|.|..++|.+|++|++|+++|| |+.+||++|.+|+++||++|...++..|+...... ...|...+-...+.
T Consensus 206 iv~~h~f~~~~~~~pt~C~~C~~~l~-g~~~qg~~C~~C~~~~Hk~C~~~vp~~C~~~~~~~----~~vFG~~L~~~~~~ 280 (463)
T 3cxl_A 206 YEKIHNFKVHTFRGPHWCEYCANFMW-GLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHV----KKVYSCDLTTLVKA 280 (463)
T ss_dssp -CBCCCEEEECCSSCCBCTTTCCBCC-SSSCCEEEETTTCCEECHHHHTTSCSBCCGGGGGC----CCCTTSCHHHHHHH
T ss_pred cCCCcceEEeecCCCCcchhhhhhhh-hHHhcCeeccccCcccccccccccccccccccccc----ccccccccchhhhc
Confidence 57899999999999999999999997 99999999999999999999999999998654321 11222222222222
Q ss_pred CCccccccccccccccc
Q psy1485 214 KGTKLHIFNDHTFIAKH 230 (252)
Q Consensus 214 ~~y~sptFCdHCF~ak~ 230 (252)
.....|.+-..|.-.++
T Consensus 281 ~~~~vP~iv~~~i~~le 297 (463)
T 3cxl_A 281 HTTKRPMVVDMCIREIE 297 (463)
T ss_dssp HTCSSCHHHHHHHHHHH
T ss_pred cCCCCCeeHHHHHHHHH
Confidence 23456666666654443
No 17
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.12 E-value=2.1e-11 Score=119.17 Aligned_cols=60 Identities=28% Similarity=0.512 Sum_probs=51.0
Q ss_pred eecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCCccc
Q psy1485 133 HIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQ 194 (252)
Q Consensus 133 h~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~s~~ 194 (252)
...++|.|..+.|.+||+|++|+++|| |+++|||+|..|+++||++|+..| ..|++.+..
T Consensus 514 ~~~~~H~F~~~~~~~~t~C~~C~~~l~-gl~~qg~~C~~C~~~vHk~C~~~v-~~C~~~~~~ 573 (587)
T 3ky9_A 514 ATANGHDFQMFSFEETTSCKACQMLLR-GTFYQGYRCHRCRASAHKECLGRV-PPCGRHGQD 573 (587)
T ss_dssp TTGGGCCEEEECCSSCCBCTTTCSBCC-SSSCCEEEETTTCCEECSGGGGGS-CCC------
T ss_pred ccccCCceeEEeCCCCccccccccccc-ccccCCcCCCCCCCccchhhhhcC-CCCCCCCcc
Confidence 356899999999999999999999997 999999999999999999999999 489877653
No 18
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.08 E-value=4.5e-11 Score=111.26 Aligned_cols=58 Identities=29% Similarity=0.508 Sum_probs=50.7
Q ss_pred ecCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCCcc
Q psy1485 134 IFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTI 193 (252)
Q Consensus 134 ~~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~s~ 193 (252)
...+|.|..+.+..||+|.+|+.++| |+.+||++|+.|+++||++|+.+|+. |++...
T Consensus 343 ~~~~h~f~~~~~~~~t~C~~C~~~~~-g~~~qg~~C~~C~~~~h~~C~~~~~~-C~~~~~ 400 (406)
T 2vrw_B 343 TANGHDFQMFSFEETTSCKACQMLLR-GTFYQGYRCYRCRAPAHKECLGRVPP-CGRHGQ 400 (406)
T ss_dssp TGGGCCEEEECCSSCCBCTTTCCBCC-SSSSCEEEETTTCCEECGGGGGGSCC-C-----
T ss_pred cCCCCCCccccCCCCCCCccccchhc-eeCCCCCCCCCCcCccchhhhhhCCC-CCCCch
Confidence 46789999999999999999999997 99999999999999999999999995 987643
No 19
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.72 E-value=5.7e-09 Score=103.35 Aligned_cols=56 Identities=27% Similarity=0.571 Sum_probs=51.7
Q ss_pred cCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCC
Q psy1485 135 FNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHS 191 (252)
Q Consensus 135 ~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~ 191 (252)
...|.|..+.|..+++|++|+.+|| |+.+|||+|..|++++|++|...|+..|...
T Consensus 100 ~~~h~~~~~~~~~~~~C~~C~~~l~-g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~d 155 (674)
T 3pfq_A 100 RSKHKFKIHTYSSPTFCDHCGSLLY-GLIHQGMKCDTCMMNVHKRCVMNVPSLCGTD 155 (674)
T ss_dssp --CCCCCEECCSSCCCCSSSCSCCB-BSSSCEECCSSSCCCBCSSTTSSSCCCSSSC
T ss_pred cCCcceeecCCCCCCCCCccccccc-hhhcCccccccCCcchhhhhhhccCcccccc
Confidence 4689999999999999999999997 9999999999999999999999999999754
No 20
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=98.36 E-value=5e-08 Score=75.15 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=46.5
Q ss_pred hHHHHHHHhH-----hhhhhhccCCCCCCCCCCCCCcccchhhhhccccCCccccccccccceeeeecc
Q psy1485 43 RVDLIRSACQ-----VYLMVFVLNDHCSSVGPLREGSARSSLSEASGVSGASTRTYFNEASTLVLETLE 106 (252)
Q Consensus 43 ~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~s~~~~Lseas~~s~~~~~~~~~~~s~L~le~~~ 106 (252)
=.++||++|. +|||+|+||| |+|.++|++++|+||+++++ ++.+++|.||.++
T Consensus 31 L~~kv~~~~~~~~~~~f~lky~DEe-----GD~itisSd~EL~eAl~l~~------~n~~~~l~ihvf~ 88 (89)
T 1vd2_A 31 LCNEVRDMCSFDNEQLFTMKWIDEE-----GDPCTVSSQLELEEAFRLYE------LNKDSELLIHVFP 88 (89)
T ss_dssp HHHHHHHHTTCCSSCCEEEEECCSS-----SCCEECCSHHHHHHHHHHHH------HTSCCCEEEEEEE
T ss_pred HHHHHHHHhCCCCCCeEEEEEECCC-----CCcccccCHHHHHHHHHHHH------ccCCCCEEEEEcc
Confidence 3578999994 5999999965 55668999999999999999 8999999999986
No 21
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=97.87 E-value=7.1e-06 Score=62.43 Aligned_cols=58 Identities=24% Similarity=0.499 Sum_probs=50.9
Q ss_pred cCCCeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccccCCCCc
Q psy1485 135 FNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHST 192 (252)
Q Consensus 135 ~~gH~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~~~s 192 (252)
...|.|+.-.+...++|++|.+.++..++-+|++|.-|++.+|.+|+..++..|....
T Consensus 25 ~~~H~WveGNl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~~~eC~lG~ 82 (84)
T 1r79_A 25 AMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSGPS 82 (84)
T ss_dssp CBCCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHCCSCBCCSC
T ss_pred cceeeEEccCCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhccCcCCCCC
Confidence 4579999998888999999999997446669999999999999999999999997543
No 22
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=97.12 E-value=0.0002 Score=51.05 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=32.5
Q ss_pred hhhhccccccccccCCccccccccccccccc-cCCcccccCC
Q psy1485 200 KDRIELRQQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNSP 240 (252)
Q Consensus 200 ~~r~~ir~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~~ 240 (252)
..++++..+|+|.+++|..||||+||...+| +...+|++++
T Consensus 4 ~~~~~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~ 45 (65)
T 2enz_A 4 GSSGKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDA 45 (65)
T ss_dssp SCCCCCCCCCCEEECCCCSCCBCSSSCCBCCCSSSCSEEESS
T ss_pred cccCCCCCCCccEeEcCCCCcCchhcChhheecCCcccccCC
Confidence 4567788999999999999999999987766 3345666654
No 23
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.47 E-value=0.0015 Score=49.06 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=29.4
Q ss_pred hccccccccccCCccccccccccccccc-cCCcccccCC
Q psy1485 203 IELRQQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNSP 240 (252)
Q Consensus 203 ~~ir~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~~ 240 (252)
.....+|+|..++|..||||+||...+| +...+|++++
T Consensus 12 ~~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~kqG~~C~~ 50 (85)
T 2eli_A 12 DDPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDT 50 (85)
T ss_dssp CCTTTSCCCEEECCSSCCBCSSSCCBCCCSSSCEEECSS
T ss_pred CCCCCCcccEeeeCCCCcCCcccCccccccccCCCcCCC
Confidence 3567899999999999999999976665 2335666654
No 24
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=96.31 E-value=0.0016 Score=45.75 Aligned_cols=34 Identities=6% Similarity=-0.197 Sum_probs=27.1
Q ss_pred ccccccccc-CCccccccccccccccccCCcccccCC
Q psy1485 205 LRQQNRWSK-KGTKLHIFNDHTFIAKHLPGTLYTNSP 240 (252)
Q Consensus 205 ir~PHrf~~-~~y~sptFCdHCF~ak~L~g~~~~~~~ 240 (252)
...+|+|.+ ++|..||||+||.-.+ ...+|++.+
T Consensus 7 ~~~~H~F~~~~~~~~pt~C~~C~~~i--~kqg~kC~~ 41 (59)
T 1rfh_A 7 RGEGHRFVELALRGGPGWCDLCGREV--LRQALRCAN 41 (59)
T ss_dssp CCSSCCCEECCCSSCCEECTTTCSEE--CSCCEECTT
T ss_pred CCCCCcCeeeeccCCCeEchhcchhh--hhCccEeCC
Confidence 357999999 9999999999997666 345567665
No 25
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=96.27 E-value=0.002 Score=47.17 Aligned_cols=34 Identities=6% Similarity=-0.197 Sum_probs=27.6
Q ss_pred ccccccccc-CCccccccccccccccccCCcccccCC
Q psy1485 205 LRQQNRWSK-KGTKLHIFNDHTFIAKHLPGTLYTNSP 240 (252)
Q Consensus 205 ir~PHrf~~-~~y~sptFCdHCF~ak~L~g~~~~~~~ 240 (252)
...+|+|.+ ++|..||||+||.-.+ ...+|++.+
T Consensus 20 ~~~~H~F~~~~~~~~pt~C~~C~~~l--~~qG~kC~~ 54 (72)
T 2fnf_X 20 RGEGHRFVELALRGGPGWCDLCGREV--LRQALRCAN 54 (72)
T ss_dssp GCSSCCCEECCCCSSCCBCTTTSSBC--SSCCEECTT
T ss_pred cCCCCccceeecCCCCcchhhhhHHH--HhCcCccCC
Confidence 568999999 9999999999997666 345567764
No 26
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=95.71 E-value=0.0031 Score=44.94 Aligned_cols=38 Identities=3% Similarity=-0.249 Sum_probs=25.9
Q ss_pred hccccccccccCCccccccccccccccc-cCCcccccCC
Q psy1485 203 IELRQQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNSP 240 (252)
Q Consensus 203 ~~ir~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~~ 240 (252)
.....+|+|..++|..||||+||...+| +...+|++.+
T Consensus 8 ~~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~ 46 (66)
T 1y8f_A 8 GGGGIQHNFEVWTATTPTYCYECEGLLWGIARQGMRCTE 46 (66)
T ss_dssp -----CCCEEEEECSSCCCCTTTCCCCCSSCCEEEEETT
T ss_pred CCCCCCcccEeeeCCCCcChhhcChhhcccCcceeEcCC
Confidence 3456899999999999999999976665 2235566654
No 27
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=95.52 E-value=0.0053 Score=40.91 Aligned_cols=32 Identities=16% Similarity=-0.019 Sum_probs=25.1
Q ss_pred cccccCCccccccccccccccc-cCCcccccCC
Q psy1485 209 NRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNSP 240 (252)
Q Consensus 209 Hrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~~ 240 (252)
|+|.+++|..||||+||...++ +...+|++++
T Consensus 1 H~F~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~ 33 (50)
T 1ptq_A 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCED 33 (50)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETT
T ss_pred CCCEeecCCCCCCcCCCCceeeccCCccCEeCC
Confidence 8899999999999999987666 3345566654
No 28
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=95.25 E-value=0.0059 Score=41.07 Aligned_cols=30 Identities=10% Similarity=-0.024 Sum_probs=25.5
Q ss_pred ccccccCCccccccccccccccccCCcccccCC
Q psy1485 208 QNRWSKKGTKLHIFNDHTFIAKHLPGTLYTNSP 240 (252)
Q Consensus 208 PHrf~~~~y~sptFCdHCF~ak~L~g~~~~~~~ 240 (252)
+|+|..++|..||||++|...++ .+|.+.+
T Consensus 3 ~H~F~~~~~~~pt~C~~C~~~l~---qG~~C~~ 32 (52)
T 1faq_A 3 THNFARKTFLKLAFCDICQKFLL---NGFRCQT 32 (52)
T ss_dssp CCCCEEECCSSCEECTTSSSEEC---SEEECTT
T ss_pred CceeEeEeCCCCcCCCCcccccc---cCCEeCC
Confidence 79999999999999999987666 5667654
No 29
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=95.17 E-value=0.0075 Score=42.66 Aligned_cols=34 Identities=15% Similarity=-0.026 Sum_probs=26.7
Q ss_pred cccccccCCccccccccccccccc-cCCcccccCC
Q psy1485 207 QQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNSP 240 (252)
Q Consensus 207 ~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~~ 240 (252)
.+|+|.+++|..|+||+||...++ +...+|++++
T Consensus 8 ~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~ 42 (65)
T 3uej_A 8 GSHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCED 42 (65)
T ss_dssp EECCEEEECCSSCCBCTTTCCBCCSSSSCEEEETT
T ss_pred CCceEEeEeCCCCCcccccChhhhccCceeeECCC
Confidence 599999999999999999976665 3335666654
No 30
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.15 E-value=0.0076 Score=44.77 Aligned_cols=39 Identities=10% Similarity=-0.059 Sum_probs=30.1
Q ss_pred hhccccccccccCCccccccccccccccc-cCCcccccCC
Q psy1485 202 RIELRQQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNSP 240 (252)
Q Consensus 202 r~~ir~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~~ 240 (252)
......+|+|..++|..||||+||.-.+| +...+|++.+
T Consensus 11 k~~~~~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~ 50 (83)
T 2yuu_A 11 KIHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQ 50 (83)
T ss_dssp CEECGGGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETT
T ss_pred hCcccCCCceEeEeCCCCcChhhcChhhccccccccccCC
Confidence 34445799999999999999999987666 3445677665
No 31
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.70 E-value=0.0091 Score=43.53 Aligned_cols=39 Identities=8% Similarity=-0.131 Sum_probs=29.0
Q ss_pred hhccccccccccCCccccccccccccccc-cCCcccccCC
Q psy1485 202 RIELRQQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNSP 240 (252)
Q Consensus 202 r~~ir~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~~ 240 (252)
+.....+|+|..++|..||||+||...+| +...+|++.+
T Consensus 11 k~~~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~ 50 (74)
T 2db6_A 11 KLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKN 50 (74)
T ss_dssp CCSCSSBCCEEEEECSSCEECSSSCCEECHHHHEEEEESS
T ss_pred ccccCCCCceEEeeCCCCcCchhcChhhccccCCccccCC
Confidence 34556899999999999999999976665 1224555544
No 32
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=94.66 E-value=0.012 Score=40.19 Aligned_cols=35 Identities=9% Similarity=-0.122 Sum_probs=27.6
Q ss_pred ccccccccCCccccccccccccccccCCcccccCCceee
Q psy1485 206 RQQNRWSKKGTKLHIFNDHTFIAKHLPGTLYTNSPFYFR 244 (252)
Q Consensus 206 r~PHrf~~~~y~sptFCdHCF~ak~L~g~~~~~~~~~~~ 244 (252)
.+||+|..+++++ ++|++|.-.++ .| |++.+=-|+
T Consensus 2 ~i~HrF~~~t~~~-t~C~~C~k~i~--~G-~kC~~Ck~~ 36 (49)
T 1kbe_A 2 SVTHRFSTKSWLS-QVCNVCQKSMI--FG-VKCKHCRLK 36 (49)
T ss_dssp CCCCCEEEECCSS-CCCSSSCCSSC--CE-EEETTTTEE
T ss_pred CCCcccCccCCCC-cCccccCceeE--Cc-CCCCCCCCc
Confidence 4799999999995 99999987776 44 788775443
No 33
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=94.51 E-value=0.013 Score=42.97 Aligned_cols=36 Identities=8% Similarity=-0.098 Sum_probs=28.2
Q ss_pred cccccccccCCccccccccccccccc-cCCcccccCC
Q psy1485 205 LRQQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNSP 240 (252)
Q Consensus 205 ir~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~~ 240 (252)
...+|.|.+++|..||||+||...+| |...+|.+.+
T Consensus 20 ~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~ 56 (77)
T 2enn_A 20 HVKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQ 56 (77)
T ss_dssp ESSSCEEEEECCSSCEECSSSCCEECCTTCCEEECSS
T ss_pred cCCCCccEEEcCCCCcCccccChhhccccccccCcCC
Confidence 34699999999999999999987776 3345566654
No 34
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=93.91 E-value=0.019 Score=43.46 Aligned_cols=27 Identities=0% Similarity=-0.148 Sum_probs=24.1
Q ss_pred ccccccccccCCccccccccccccccc
Q psy1485 204 ELRQQNRWSKKGTKLHIFNDHTFIAKH 230 (252)
Q Consensus 204 ~ir~PHrf~~~~y~sptFCdHCF~ak~ 230 (252)
-...+|+|.+.+|..||||+||.-.+|
T Consensus 20 ~~~~~H~F~~~~~~~PT~Cd~C~~~lW 46 (84)
T 2row_A 20 ICHKGHEFIPTLYHFPTNCEACMKPLW 46 (84)
T ss_dssp EEETTEEEEEECCSSCEECSSSSSEEC
T ss_pred EEcCCcceEeEcCCCCcchhhcCHhhh
Confidence 346899999999999999999987777
No 35
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=93.10 E-value=0.048 Score=51.80 Aligned_cols=39 Identities=3% Similarity=-0.174 Sum_probs=27.9
Q ss_pred hhccccccccccCCccccccccccccccc-cCCcccccCC
Q psy1485 202 RIELRQQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNSP 240 (252)
Q Consensus 202 r~~ir~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~~ 240 (252)
..++..+|.|.++++..||||+||...++ +...+|+|++
T Consensus 203 H~niv~~h~f~~~~~~~pt~C~~C~~~l~g~~~qg~~C~~ 242 (463)
T 3cxl_A 203 IPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCAD 242 (463)
T ss_dssp ----CBCCCEEEECCSSCCBCTTTCCBCCSSSCCEEEETT
T ss_pred ccccCCCcceEEeecCCCCcchhhhhhhhhHHhcCeeccc
Confidence 44567899999999999999999976655 2235666664
No 36
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=91.40 E-value=0.058 Score=38.16 Aligned_cols=36 Identities=3% Similarity=-0.287 Sum_probs=28.9
Q ss_pred cccccccccCCccccccccccccccccCCcccccCC
Q psy1485 205 LRQQNRWSKKGTKLHIFNDHTFIAKHLPGTLYTNSP 240 (252)
Q Consensus 205 ir~PHrf~~~~y~sptFCdHCF~ak~L~g~~~~~~~ 240 (252)
...+|.|...+++.|++|++|.-.+++-..+|.+.|
T Consensus 5 ~~~~H~F~~kt~~~~~~C~~Cg~~i~~gkq~~kC~d 40 (61)
T 4b6d_A 5 SMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRD 40 (61)
T ss_dssp CBCCCCEEEEECCSCEECTTTCCEECTTCEEEEESS
T ss_pred cccceeEEeeeccCCcccccccCEEEEeeEeeECCC
Confidence 345999999999999999999877764446777765
No 37
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=90.60 E-value=0.18 Score=38.01 Aligned_cols=44 Identities=20% Similarity=0.521 Sum_probs=32.0
Q ss_pred CeEEEEecCCCCcCCCCCCcccccccccccccCCccccccccccccccc
Q psy1485 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTET 186 (252)
Q Consensus 138 H~F~a~~f~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~ 186 (252)
|.+..... .+..|+.|...+ ....|.|..|++..|..|+..-+.
T Consensus 38 H~L~L~~~-~~~~C~~C~~~~----~~~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 38 HELELTRV-QVYTCDKCEEEG----TIWSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp SCEEEECC-SSCCCTTTSCCC----CSCEEECTTTCCCCCHHHHHCSSC
T ss_pred CccEEeeC-CCeEeCCCCCcC----CCcEEEcCCCCCeEcHHhcCCCCc
Confidence 55554432 256899999865 235699999999999999975443
No 38
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=88.47 E-value=0.39 Score=36.10 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=34.1
Q ss_pred ccCCCCccccc--ccchhhhccccccccccCCccccccccccccccccCCccc
Q psy1485 186 TTCPHSTIQHL--ELNKDRIELRQQNRWSKKGTKLHIFNDHTFIAKHLPGTLY 236 (252)
Q Consensus 186 ~~C~~~s~~~~--el~~~r~~ir~PHrf~~~~y~sptFCdHCF~ak~L~g~~~ 236 (252)
..|.+.+.+++ ++..+.....++|.|.+++.....+|+.|. +..++.+
T Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~H~WveGNl~~~s~C~vC~---k~c~s~~ 52 (84)
T 1r79_A 3 SGSSGTTLASIGKDIIEDADGIAMPHQWLEGNLPVSAKCTVCD---KTCGSVL 52 (84)
T ss_dssp CCCCCCCCCCCCCCCCCCSSCCCBCCCEEESCCCTTCBCSSSC---CBCCCTT
T ss_pred CCccceecccccccccccCCCccceeeEEccCCCCCCEeCCCC---CEeCCcc
Confidence 46777777665 344444456799999999999988999884 4344444
No 39
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=72.94 E-value=1.2 Score=38.92 Aligned_cols=33 Identities=27% Similarity=0.758 Sum_probs=28.4
Q ss_pred CCCcCCCCCCcccccccccccccCCccccccccccccc
Q psy1485 147 GGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRT 184 (252)
Q Consensus 147 ~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V 184 (252)
....|..|.+.+- +|.+|..|+...|..|..+.
T Consensus 179 ~i~~C~iC~~iv~-----~g~~C~~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 179 AVKICNICHSLLI-----QGQSCETCGIRMHLPCVAKY 211 (238)
T ss_dssp TCCBCTTTCSBCS-----SCEECSSSCCEECHHHHHHH
T ss_pred CCCcCcchhhHHh-----CCcccCccChHHHHHHHHHH
Confidence 4789999999762 78999999999999998653
No 40
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.80 E-value=1.6 Score=31.72 Aligned_cols=34 Identities=26% Similarity=0.729 Sum_probs=28.3
Q ss_pred CCCCcCCCCCCcccccccccccccCCccccccccccccc
Q psy1485 146 PGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRT 184 (252)
Q Consensus 146 ~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V 184 (252)
.....|++|.+.|. +|.+|..|+...|..|..+-
T Consensus 13 ~~i~~C~IC~~~i~-----~g~~C~~C~h~fH~~Ci~kW 46 (74)
T 2ct0_A 13 DAVKICNICHSLLI-----QGQSCETCGIRMHLPCVAKY 46 (74)
T ss_dssp SSSCBCSSSCCBCS-----SSEECSSSCCEECHHHHHHH
T ss_pred CCCCcCcchhhHcc-----cCCccCCCCchhhHHHHHHH
Confidence 45778999999762 78899999999999998643
No 41
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.38 E-value=3.1 Score=30.81 Aligned_cols=37 Identities=24% Similarity=0.674 Sum_probs=30.8
Q ss_pred CCCcCCCCCCcccccccccccccCCccccccccccccc
Q psy1485 147 GGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRT 184 (252)
Q Consensus 147 ~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V 184 (252)
.--.|+.|...+ +-++..|-.|.+|+..|-++|....
T Consensus 24 ~~r~CarC~~~L-G~l~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 24 SDRTCARCQESL-GRLSPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp CCCBCSSSCCBC-SSSCTTTSEETTTTEECCTTSEEEC
T ss_pred CccchhhhCccc-cccccCCCcCcccChhhcccccccC
Confidence 455799999988 5678899999999999988887644
No 42
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=63.57 E-value=1 Score=34.97 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=28.2
Q ss_pred HHHHHHh-----HhhhhhhccCCCCCCCCCCCCCcccchhhhhcc
Q psy1485 45 DLIRSAC-----QVYLMVFVLNDHCSSVGPLREGSARSSLSEASG 84 (252)
Q Consensus 45 ~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~s~~~~Lseas~ 84 (252)
+.|+++| ..|+++|.|+| |++-++|+.+||.+|..
T Consensus 49 ~~V~~lFp~l~~~~f~l~Y~Ded-----GDlItiSsDeEL~~Al~ 88 (102)
T 2kkc_A 49 SRVAVLFPALRPGGFQAHYRAER-----GDLVAFSSDEELTMAMS 88 (102)
T ss_dssp HHHHHHCTTSCSSCEEEEEECTT-----CCEEEECSHHHHHHHHH
T ss_pred HHHHHHccccCCCcEEEEEECCC-----CCEEEecCHHHHHHHHH
Confidence 4566666 34899999977 67778999999999994
No 43
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=62.75 E-value=3 Score=38.10 Aligned_cols=33 Identities=3% Similarity=-0.210 Sum_probs=25.4
Q ss_pred ccccccccCCccccccccccccccc-cCCccccc
Q psy1485 206 RQQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTN 238 (252)
Q Consensus 206 r~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~ 238 (252)
..+|.|..+++..||||+||....+ +...++.|
T Consensus 344 ~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C 377 (406)
T 2vrw_B 344 ANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRC 377 (406)
T ss_dssp GGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEE
T ss_pred CCCCCCccccCCCCCCCccccchhceeCCCCCCC
Confidence 3689999999999999999986664 34444444
No 44
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=55.61 E-value=4.5 Score=39.08 Aligned_cols=34 Identities=3% Similarity=-0.206 Sum_probs=26.0
Q ss_pred ccccccccCCccccccccccccccc-cCCcccccC
Q psy1485 206 RQQNRWSKKGTKLHIFNDHTFIAKH-LPGTLYTNS 239 (252)
Q Consensus 206 r~PHrf~~~~y~sptFCdHCF~ak~-L~g~~~~~~ 239 (252)
...|.|..+++..||+|+||...++ +...+|.|.
T Consensus 516 ~~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~ 550 (587)
T 3ky9_A 516 ANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCH 550 (587)
T ss_dssp GGGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEET
T ss_pred ccCCceeEEeCCCCcccccccccccccccCCcCCC
Confidence 4689999999999999999976553 333455554
No 45
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=55.19 E-value=1.8 Score=34.52 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=29.4
Q ss_pred HHHHHHHh-----HhhhhhhccCCCCCCCCCCCCCcccchhhhhccc
Q psy1485 44 VDLIRSAC-----QVYLMVFVLNDHCSSVGPLREGSARSSLSEASGV 85 (252)
Q Consensus 44 ~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~s~~~~Lseas~~ 85 (252)
.+.|++++ ..|+++|.|+| |++-++|+.+||.+|...
T Consensus 63 ~~kV~~lFp~L~~~~f~l~YkDEd-----GDlItISsDeEL~~Al~~ 104 (117)
T 2ktr_A 63 LSRVAVLFPALRPGGFQAHYRAER-----GDLVAFSSDEELTMAMSY 104 (117)
T ss_dssp HHHHHHHCTTSCSSCEEEEEECTT-----CCEEEECSHHHHHHHHHH
T ss_pred HHHHHHHccccCCCcEEEEEECCC-----CCEEEecCHHHHHHHHHh
Confidence 35567777 24899999977 667789999999999943
No 46
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=52.34 E-value=6.7 Score=31.53 Aligned_cols=38 Identities=32% Similarity=0.690 Sum_probs=31.4
Q ss_pred CCCcCCCCCCcccccccccccccCCcccccccccccccc
Q psy1485 147 GGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTE 185 (252)
Q Consensus 147 ~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~ 185 (252)
....|..|...+ +.+...|-.|.+|+..+-++|...++
T Consensus 54 ~~~~C~~C~~~~-g~l~~~g~~C~~C~~~VC~~C~~~~~ 91 (134)
T 1zbd_B 54 GVNRCILCGEQL-GMLGSASVVCEDCKKNVCTKCGVETS 91 (134)
T ss_dssp SSSBCSSSCCBC-STTSCCEEECTTTCCEEETTSEEECC
T ss_pred CCccccccCCCc-ccccCCCCCCCCCCcccccccCCccC
Confidence 567899999976 23567899999999999999988764
No 47
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=51.24 E-value=8.5 Score=31.64 Aligned_cols=38 Identities=26% Similarity=0.550 Sum_probs=30.7
Q ss_pred CCCcCCCCCCcccccccccccccCCcccccccccccccc
Q psy1485 147 GGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTE 185 (252)
Q Consensus 147 ~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~ 185 (252)
....|..|...+ +-+...|-.|.+|+..+-++|...++
T Consensus 67 ~~~~C~~C~~~f-g~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPY-RLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBG-GGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCcc-ccccCCCCcCCCCCchhhcccccccC
Confidence 467999999976 34567899999999999999985443
No 48
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=46.37 E-value=16 Score=27.55 Aligned_cols=38 Identities=24% Similarity=0.518 Sum_probs=25.0
Q ss_pred CCcCCCCCCcccccccccccccCCccccccccccccccccCC
Q psy1485 148 GTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189 (252)
Q Consensus 148 pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V~~~C~ 189 (252)
+..|..|+..+ ||. .+|+|+ |+.+.--+-...-...|.
T Consensus 25 ~~rC~~C~kkv--gl~-~~f~Cr-Cg~~FC~~HRy~e~H~C~ 62 (85)
T 1wff_A 25 MKHCFLCGKKT--GLA-TSFECR-CGNNFCASHRYAEAHGCN 62 (85)
T ss_dssp CCBCSSSCCBC--SSS-SCEECT-TCCEECTTTCSTGGGTCC
T ss_pred CccchhhCCee--ccc-CCeEcC-CCCEecccCCCccCCCCc
Confidence 57899999975 664 689997 997753333333334454
No 49
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=44.18 E-value=3.8 Score=31.89 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=34.3
Q ss_pred HHHHHhHh--hhhhhccCCCCCCCCCCCCCcccchhhhhccccCCccccccccccceeeeecc
Q psy1485 46 LIRSACQV--YLMVFVLNDHCSSVGPLREGSARSSLSEASGVSGASTRTYFNEASTLVLETLE 106 (252)
Q Consensus 46 ~~~~~~~~--~~~~~~~~d~~~~~~~~~~~s~~~~Lseas~~s~~~~~~~~~~~s~L~le~~~ 106 (252)
.+...|.+ |.++|.||| +.+-.++++.|++||.++.. ++.-.|.++..+
T Consensus 44 mvk~~f~L~~~~IkY~DEe-----nD~V~i~Sq~E~eEAlkva~-------k~~n~L~m~V~~ 94 (101)
T 1wj6_A 44 MVKVSFDLNTIQIKYLDEE-----NEEVSINSQGEYEEALKMAV-------KQGNQLQMQVHE 94 (101)
T ss_dssp HHHHHHCCSSBCCEEECTT-----SCEECCCSHHHHHHHHHHHH-------HHTSEEEEECCB
T ss_pred HHHHHcCCCceEEEEecCC-----CCEEEEecHHHHHHHHHHhc-------cCCCEEEEEEee
Confidence 34555543 677999955 44447999999999996554 556667777765
No 50
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=37.87 E-value=26 Score=25.01 Aligned_cols=25 Identities=32% Similarity=0.794 Sum_probs=19.2
Q ss_pred CCCcCCCCCCcccccccccccccCCccccc
Q psy1485 147 GGTVCQMCCKPLARRLGKQGYECRDCHVKC 176 (252)
Q Consensus 147 ~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~c 176 (252)
.+..|+.|+..+ ||. +++|+ |+.+.
T Consensus 14 ~~~rC~~C~kkv--gl~--~f~Cr-Cg~~F 38 (64)
T 1wfh_A 14 RPNRCTVCRKRV--GLT--GFMCR-CGTTF 38 (64)
T ss_dssp SCCCCTTTCCCC--CTT--CEECS-SSCEE
T ss_pred cCCcChhhCCcc--Ccc--CEEee-cCCEe
Confidence 367899999965 664 89995 88765
No 51
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=36.48 E-value=3.7 Score=31.17 Aligned_cols=47 Identities=6% Similarity=0.171 Sum_probs=31.1
Q ss_pred HHHHHhHh--hhhhhccCCCCCCCCCCCCCcccchhhhhccccCCccccccccccceeeee
Q psy1485 46 LIRSACQV--YLMVFVLNDHCSSVGPLREGSARSSLSEASGVSGASTRTYFNEASTLVLET 104 (252)
Q Consensus 46 ~~~~~~~~--~~~~~~~~d~~~~~~~~~~~s~~~~Lseas~~s~~~~~~~~~~~s~L~le~ 104 (252)
.+...|.+ |.++|.||| +.+-.++++.|++||.++.. ++.-.|.++.
T Consensus 36 mvk~~f~L~~~~ikY~DEe-----nD~v~i~Sq~E~eEAlkva~-------k~~n~L~m~v 84 (87)
T 2bkf_A 36 MVKVSFDLNTIQIKYLDEE-----NEEVSINSQGEYEEALKMAV-------KQGNQLQMQV 84 (87)
T ss_dssp HHHHHHTCSSEEEEEECTT-----SCEEEECSHHHHHHHHHHHH-------HTTTEEEEEE
T ss_pred HHHHHcCCCceEEEEEcCC-----CCEEEEecHHHHHHHHHHhc-------cCCCEEEEEE
Confidence 34555543 677999955 44446999999999996554 4444455554
No 52
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=34.01 E-value=16 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=24.1
Q ss_pred CcCCCCCCcccccccccccccCCccccccccccc
Q psy1485 149 TVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHV 182 (252)
Q Consensus 149 t~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~ 182 (252)
++|.+|+.. |-...-+.|..|....|-.|..
T Consensus 1 a~C~vC~~~---~~~~~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 1 ARCKVCRKK---GEDDKLILCDECNKAFHLFCLR 31 (51)
T ss_dssp CCCTTTCCS---SCCSCCEECTTTCCEECHHHHC
T ss_pred CCCCCCCCC---CCCCCEEECCCCChhhCcccCC
Confidence 368899862 3345668899999999999985
No 53
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.06 E-value=32 Score=25.24 Aligned_cols=24 Identities=38% Similarity=0.873 Sum_probs=18.3
Q ss_pred CCcCCCCCCcccccccccccccCCccccc
Q psy1485 148 GTVCQMCCKPLARRLGKQGYECRDCHVKC 176 (252)
Q Consensus 148 pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~c 176 (252)
+..|..|+..+ || -|++|. |+...
T Consensus 25 ~nRC~~CrKkv--gL--~gf~Cr-Cg~~F 48 (74)
T 1wfl_A 25 KNRCFMCRKKV--GL--TGFDCR-CGNLF 48 (74)
T ss_dssp TTBCSSSCCBC--GG--GCEECT-TSCEE
T ss_pred CCcChhhCCcc--cc--cCeecC-CCCEe
Confidence 46899999965 55 479999 98554
No 54
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=32.58 E-value=18 Score=27.41 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=25.9
Q ss_pred CCcCCCCCCcccccccccccccCCccccccccccccc
Q psy1485 148 GTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRT 184 (252)
Q Consensus 148 pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V 184 (252)
-..|++|.. | . ...-|.|+.|+-++|--|....
T Consensus 15 D~~C~VC~~--~-t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCEV--W-T-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTCC--C-C-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CcccCcccc--c-c-ccceeccccccccccHhhcccc
Confidence 457999985 3 2 3456899999999999998764
No 55
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=31.89 E-value=20 Score=27.39 Aligned_cols=42 Identities=24% Similarity=0.750 Sum_probs=32.1
Q ss_pred CCCcCCCCCCcccccccccc---cccCCccccccccccccc----cccCCC
Q psy1485 147 GGTVCQMCCKPLARRLGKQG---YECRDCHVKCHKQCHVRT----ETTCPH 190 (252)
Q Consensus 147 ~pt~C~vC~~~Iw~Gl~kQG---yqC~~Ck~~cHKKC~~~V----~~~C~~ 190 (252)
....|.+|++-| |+...| .-|..|.|.+-+.|...- ...|+.
T Consensus 15 ~~qiCqiCGD~V--G~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~Cpq 63 (93)
T 1weo_A 15 DGQFCEICGDQI--GLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQ 63 (93)
T ss_dssp SSCBCSSSCCBC--CBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTT
T ss_pred CCCccccccCcc--ccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccc
Confidence 356899999998 787777 569999999999996433 344554
No 56
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.03 E-value=43 Score=23.88 Aligned_cols=25 Identities=24% Similarity=0.660 Sum_probs=19.0
Q ss_pred CCCcCCCCCCcccccccccccccCCccccc
Q psy1485 147 GGTVCQMCCKPLARRLGKQGYECRDCHVKC 176 (252)
Q Consensus 147 ~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~c 176 (252)
.+..|+.|+..+ ||. +++| .|+.+.
T Consensus 14 ~~~rC~~C~kkv--gl~--~f~C-rCg~~F 38 (64)
T 1wg2_A 14 PNNRCFSCNKKV--GVM--GFKC-KCGSTF 38 (64)
T ss_dssp CSCSCTTTCCCC--TTS--CEEC-TTSCEE
T ss_pred cCCcChhhCCcc--ccc--CeEe-ecCCEe
Confidence 356899999965 554 8999 588765
No 57
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.00 E-value=28 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=19.9
Q ss_pred CCCcCCCCCCccccccccc-ccccCCccccc
Q psy1485 147 GGTVCQMCCKPLARRLGKQ-GYECRDCHVKC 176 (252)
Q Consensus 147 ~pt~C~vC~~~Iw~Gl~kQ-GyqC~~Ck~~c 176 (252)
.+..|..|++.+ ||..+ |++| -|+.+.
T Consensus 14 ~~~rC~~C~kk~--gL~~~egf~C-rCg~~F 41 (67)
T 1x4w_A 14 SRRRCFQCQTKL--ELVQQELGSC-RCGYVF 41 (67)
T ss_dssp CTTBCSSSCCBC--CHHHHHHHCC-SSSCCC
T ss_pred cCCcchhhCCee--cccccCceEe-cCCCEe
Confidence 366899999975 66433 7999 688665
No 58
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.70 E-value=31 Score=23.46 Aligned_cols=35 Identities=23% Similarity=0.587 Sum_probs=25.6
Q ss_pred CCcCCCCCCcccccccccccccCCcccccccccccc
Q psy1485 148 GTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVR 183 (252)
Q Consensus 148 pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~ 183 (252)
-.+|.+|+..-. .-...-+.|..|...+|..|+.-
T Consensus 6 ~~~C~vC~~~~~-~~~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYS-EAPNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCC-BTTBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCC-CCCCCEEECCCCChHHHhhhCCC
Confidence 468999986321 12356688999999999999863
No 59
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=27.08 E-value=38 Score=27.05 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=21.9
Q ss_pred cCCCCcCCCCCCccccccc----ccccccCCccccc
Q psy1485 145 LPGGTVCQMCCKPLARRLG----KQGYECRDCHVKC 176 (252)
Q Consensus 145 f~~pt~C~vC~~~Iw~Gl~----kQGyqC~~Ck~~c 176 (252)
.....||..|+.+|..--. +--|.|..|++..
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3457899999998852111 1249999999865
No 60
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.12 E-value=52 Score=24.09 Aligned_cols=24 Identities=29% Similarity=0.775 Sum_probs=18.4
Q ss_pred CCcCCCCCCcccccccccccccCCccccc
Q psy1485 148 GTVCQMCCKPLARRLGKQGYECRDCHVKC 176 (252)
Q Consensus 148 pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~c 176 (252)
+..|..|.+.+ ||. +++| .|+.+.
T Consensus 25 ~~RC~~C~kkv--gL~--~f~C-rCg~~F 48 (74)
T 1wfp_A 25 ATRCLSCNKKV--GVT--GFKC-RCGSTF 48 (74)
T ss_dssp CCBCSSSCCBC--TTT--CEEC-TTSCEE
T ss_pred CccchhhcCcc--ccc--ceEe-ccCCEe
Confidence 56899999865 664 8999 588665
No 61
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.02 E-value=36 Score=24.98 Aligned_cols=34 Identities=35% Similarity=0.807 Sum_probs=24.9
Q ss_pred CCcCCCCCCcccccccccccccCCccccccccccc
Q psy1485 148 GTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHV 182 (252)
Q Consensus 148 pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~ 182 (252)
-.+|.+|+..-- .-..+-+.|..|...+|-.|+.
T Consensus 16 ~~~C~vC~~~~~-~~~~~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 16 GLACVVCRQMTV-ASGNQLVECQECHNLYHQDCHK 49 (88)
T ss_dssp CCSCSSSCCCCC-CTTCCEEECSSSCCEEETTTSS
T ss_pred CCcCCCCCCCCC-CCCCceEECCCCCCeEcCccCC
Confidence 458999987320 0124668899999999999985
No 62
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.46 E-value=58 Score=21.94 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=26.0
Q ss_pred CCCcCCCCCCcccccccccccccCCccccccccccccc
Q psy1485 147 GGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRT 184 (252)
Q Consensus 147 ~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~V 184 (252)
..++|.+|+..- .-.....+|..|..-.|-.|....
T Consensus 5 e~~~C~~C~~~~--~~~~~mI~Cd~C~~WfH~~Cvgl~ 40 (64)
T 1we9_A 5 SSGQCGACGESY--AADEFWICCDLCEMWFHGKCVKIT 40 (64)
T ss_dssp SCCCCSSSCCCC--CSSSCEEECSSSCCEEETTTTTCC
T ss_pred CCCCCCCCCCcc--CCCCCEEEccCCCCCCCccccCcC
Confidence 467898898642 112345789999999999998653
No 63
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=21.48 E-value=48 Score=22.62 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=21.7
Q ss_pred cCCCCcCCCCCC--cccccccccccccCCccccccc
Q psy1485 145 LPGGTVCQMCCK--PLARRLGKQGYECRDCHVKCHK 178 (252)
Q Consensus 145 f~~pt~C~vC~~--~Iw~Gl~kQGyqC~~Ck~~cHK 178 (252)
|.....|..|+. +++ ......+.|..|++++-.
T Consensus 8 ll~~~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVE-DYRAGDMICPECGLVVGD 42 (58)
T ss_dssp CCSCCSBTTBSSSCCEE-CSSSCCEECTTTCCEECC
T ss_pred ccccccCcCCCCCceeE-eCCCCeEEeCCCCCEEec
Confidence 344557999975 443 334456889999887653
No 64
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.86 E-value=32 Score=24.43 Aligned_cols=37 Identities=19% Similarity=0.450 Sum_probs=27.0
Q ss_pred CCCCcCCCCCCcccccccccccccCCcccccccccccc
Q psy1485 146 PGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVR 183 (252)
Q Consensus 146 ~~pt~C~vC~~~Iw~Gl~kQGyqC~~Ck~~cHKKC~~~ 183 (252)
....+|.+|++.=. .-..+-+.|..|...+|..|...
T Consensus 14 ~~~~~C~vC~~~~s-~~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 14 DEDAVCSICMDGES-QNSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp CSSCSCSSSCCCCC-CSSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCC-CCCCCEEECCCCCCccccccCCC
Confidence 34678999986310 13346688999999999999863
Done!