RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1485
(252 letters)
>gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1) .
Cysteine-rich zinc binding domain. Some members of this
domain family bind phorbol esters and diacylglycerol,
some are reported to bind RasGTP. May occur in tandem
arrangement. Diacylglycerol (DAG) is a second messenger,
released by activation of Phospholipase D. Phorbol
Esters (PE) can act as analogues of DAG and mimic its
downstream effects in, for example, tumor promotion.
Protein Kinases C are activated by DAG/PE, this
activation is mediated by their N-terminal conserved
region (C1). DAG/PE binding may be phospholipid
dependent. C1 domains may also mediate DAG/PE signals in
chimaerins (a family of Rac GTPase activating proteins),
RasGRPs (exchange factors for Ras/Rap1), and Munc13
isoforms (scaffolding proteins involved in exocytosis).
Length = 50
Score = 53.3 bits (128), Expect = 7e-10
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
H F+ K T C +C K + L KQG C C VKCHK+C + +C
Sbjct: 1 HRFVRKSFFKPTFCDVCRKSI-WGLFKQGLRCSWCKVKCHKKCADKVPPSC 50
>gnl|CDD|197519 smart00109, C1, Protein kinase C conserved region 1 (C1) domains
(Cysteine-rich domains). Some bind phorbol esters and
diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Length = 50
Score = 49.0 bits (117), Expect = 2e-08
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
H + + T C +C K + KQG C +C VKCHK+C + C
Sbjct: 1 HKHVFRTFTKPTFCCVCRKSI-WGSFKQGLRCSECKVKCHKKCADKVPKAC 50
>gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1
domain). This domain is also known as the Protein
kinase C conserved region 1 (C1) domain.
Length = 53
Score = 45.9 bits (109), Expect = 3e-07
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHS 191
H F+ + T C C + L LGKQG +C C + HK+CH C
Sbjct: 1 HHFVHRTFKSPTFCDHCGEFL-WGLGKQGLKCSWCGLNVHKRCHSLVPPECGCG 53
>gnl|CDD|220882 pfam10818, DUF2547, Protein of unknown function (DUF2547). This
bacterial family of proteins has no known function.
Length = 90
Score = 30.5 bits (69), Expect = 0.22
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 18 QQQQLNNQNNNNNNNKSTLIIHSVQRVDLI 47
+ QQL QN NN N ++T+I + + I
Sbjct: 20 EAQQLQAQNANNENEQNTVINQQIAQTAQI 49
>gnl|CDD|214654 smart00415, HSF, heat shock factor.
Length = 105
Score = 29.2 bits (66), Expect = 0.82
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 124 RWSKKGTKLHIFNDHTFIAKHLP 146
WS G I++ F LP
Sbjct: 23 SWSPSGKSFVIWDPEEFAKNLLP 45
Score = 29.2 bits (66), Expect = 0.82
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 210 RWSKKGTKLHIFNDHTFIAKHLP 232
WS G I++ F LP
Sbjct: 23 SWSPSGKSFVIWDPEEFAKNLLP 45
>gnl|CDD|117544 pfam08978, Reoviridae_Vp9, Reoviridae VP9. This domain is found in
various VP9 viral outer-coat proteins. It has no known
function.
Length = 280
Score = 28.5 bits (63), Expect = 3.5
Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 23/151 (15%)
Query: 45 DLIRSACQVYLMVFVLNDHCSSVGPLREGSARSSLSEASGVSGASTR-TYFNEASTLVLE 103
DL R+A ++ H + + R A+ ++G + + T ++L
Sbjct: 73 DLARAAAWKFIK------HGMKIFIANNIAVRMGEKYATDLAGINRKITNVMSGERMILG 126
Query: 104 TLENGVKKHYLIPLSLAQKNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLG 163
+ G N WS K L I N+H + G +C + L+
Sbjct: 127 HIAAGT-----------LANPWSGKCAGLFITNEHNLHDNQIEPGKICVLFITSLSTTAN 175
Query: 164 K-QGYECRDCHVKCH----KQCHVRTETTCP 189
K + C + K+ + ET+C
Sbjct: 176 KSNSFAYSACSIPHEDWDFKKIKLTAETSCA 206
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 27.6 bits (62), Expect = 6.2
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 164 KQGYECRDCHVKCHKQC 180
+ C DC C C
Sbjct: 20 YEAARCLDCGDPCITGC 36
>gnl|CDD|219180 pfam06798, PrkA, PrkA serine protein kinase C-terminal domain.
This is a family of PrkA bacterial and archaeal serine
kinases approximately 630 residues long. This family
corresponds to the C-terminal domain.
Length = 254
Score = 27.5 bits (62), Expect = 6.3
Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 14/47 (29%)
Query: 84 GVSGASTRTYFNEASTL--------------VLETLENGVKKHYLIP 116
G+ G S R S VLE LE G+K H IP
Sbjct: 33 GMDGISPRFIGKALSNALVSDSEERCINPLDVLEELEQGIKDHESIP 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.132 0.402
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,048,653
Number of extensions: 1046910
Number of successful extensions: 1091
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1086
Number of HSP's successfully gapped: 18
Length of query: 252
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 157
Effective length of database: 6,723,972
Effective search space: 1055663604
Effective search space used: 1055663604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)