RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1485
(252 letters)
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 71.8 bits (176), Expect = 1e-16
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 126 SKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTE 185
S K K+H +H FIA T C +C L KQGY+CR C+ HK+C +
Sbjct: 6 SGKQAKIHYIKNHEFIATFFGQPTFCSVCKD-FVWGLNKQGYKCRQCNAAIHKKCIDKII 64
Query: 186 TTCPHSTIQ 194
C +
Sbjct: 65 GRCTGTAAN 73
Score = 25.2 bits (55), Expect = 7.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 212 SKKGTKLHIFNDHTFIAKHL 231
S K K+H +H FIA
Sbjct: 6 SGKQAKIHYIKNHEFIATFF 25
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 77
Score = 69.8 bits (171), Expect = 5e-16
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 120 AQKNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQ 179
+ + R + K K+H H F A P T C +C + L KQGY+CR C+ HK+
Sbjct: 6 SGQRRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHE-FVWGLNKQGYQCRQCNAAIHKK 64
Query: 180 CHVRTETTCPHS 191
C + C S
Sbjct: 65 CIDKVIAKCTGS 76
Score = 25.5 bits (56), Expect = 5.3
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 206 RQQNRWSKKGTKLHIFNDHTFIAKHL 231
Q R + K K+H H F A
Sbjct: 6 SGQRRGAIKQAKVHHVKCHEFTATFF 31
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 65.0 bits (158), Expect = 3e-12
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 128 KGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETT 187
+ +H +H F A+ T C C GKQG++C+ C HK+CH +
Sbjct: 28 RQKNVHEVKNHKFTARFFKQPTFCSHC-TDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFS 86
Query: 188 CPHSTIQHLELNKDRIELRQQNRWSKKGTKLHIFNDH 224
CP + + + R ++++ F DH
Sbjct: 87 CPGA-----DKGPASDDPRSKHKFKIHTYSSPTFCDH 118
Score = 48.5 bits (115), Expect = 1e-06
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 126 SKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTE 185
K + H F T C C L L QG +C C + HK+C +
Sbjct: 91 DKGPASDDPRSKHKFKIHTYSSPTFCDHC-GSLLYGLIHQGMKCDTCMMNVHKRCVMNVP 149
Query: 186 TTCPHSTIQHLELNKDRIELRQQNR 210
+ C + + + ++
Sbjct: 150 SLCGTDHTERRGRIYIQAHIDREVL 174
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 84
Score = 54.8 bits (131), Expect = 3e-10
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 126 SKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRL-GKQGYECRDCHVKCHKQCHVRT 184
K H H FI T C+ C KPL ECR CH+KCHK +
Sbjct: 15 EKSNYICH--KGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKK 72
Query: 185 ETTCP 189
E
Sbjct: 73 EEIIA 77
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 49.5 bits (118), Expect = 2e-08
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 123 NRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHV 182
+ S + KL H F C +C + + K G C++C H+ C
Sbjct: 3 SGSSGEPPKLVNDKPHKFKDHFFKKPKFCDVCARMI-VLNNKFGLRCKNCKTNIHEHCQS 61
Query: 183 RTETTC 188
E
Sbjct: 62 YVEMQR 67
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain,
zinc-binding domain, endocytosis/exocytosis,signaling
protein complex; NMR {Rattus norvegicus}
Length = 66
Score = 49.0 bits (117), Expect = 2e-08
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189
H F T C C L + +QG C +C VKCH++C C
Sbjct: 14 HNFEVWTATTPTYCYECEGLL-WGIARQGMRCTECGVKCHEKCQDLLNADCK 64
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto-
oncogene, zinc, ATP-binding, phorbol-ester binding; NMR
{Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Length = 52
Score = 48.2 bits (115), Expect = 3e-08
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 136 NDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
H F K C +C K L G+ C+ C K H+ C + T C
Sbjct: 2 TTHNFARKTFLKLAFCDICQKFL-----LNGFRCQTCGYKFHEHCSTKVPTMC 49
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis,
cysteine rich domain; NMR {Mus musculus}
Length = 72
Score = 47.6 bits (113), Expect = 8e-08
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 124 RWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVR 183
R + + H F + C +C R + +Q C +C CH +C
Sbjct: 15 RVLAERGEGHRFVELALRGGP----GWCDLC----GREVLRQALRCANCKFTCHSECRSL 66
Query: 184 TETTC 188
+ C
Sbjct: 67 IQLDC 71
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 85
Score = 47.9 bits (114), Expect = 8e-08
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQHLE 197
H F T C C L L QG +C C + HKQC + + C +
Sbjct: 18 HKFKIHTYGSPTFCDHCGSLL-YGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTE--- 73
Query: 198 LNKDRIELRQQ 208
+ RI L+ +
Sbjct: 74 -KRGRIYLKAE 83
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 65
Score = 46.7 bits (111), Expect = 1e-07
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189
H F + T C+ C L L +QG +C C + H +C + C
Sbjct: 13 HRFKVYNYKSPTFCEHCGTLL-WGLARQGLKCDACGMNVHHRCQTKVANLCG 63
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus
musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Length = 50
Score = 46.3 bits (110), Expect = 1e-07
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
H F + T C C L L KQG +C DC + H +C + C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLL-WGLVKQGLKCEDCGMNVHHKCREKVANLC 50
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal
transduction, apoptosis, cysteine rich domain, metal
binding protein; NMR {Mus musculus}
Length = 59
Score = 45.6 bits (108), Expect = 3e-07
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 124 RWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVR 183
R + + H F + C +C + + +Q C +C CH +C
Sbjct: 2 RVLAERGEGHRFVELALRGGP----GWCDLCGR----EVLRQALRCANCKFTCHSECRSL 53
Query: 184 TETTC 188
+ C
Sbjct: 54 IQLDC 58
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 48.7 bits (116), Expect = 7e-07
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 136 NDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
H F G C+ C L QG +C DC + HKQC C
Sbjct: 208 KIHNFKVHTFRGPHWCEYCAN-FMWGLIAQGVKCADCGLNVHKQCSKMVPNDC 259
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 43.9 bits (103), Expect = 3e-05
Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 13/199 (6%)
Query: 19 QQQLNNQNNNNNNNKSTLIIHSVQRVDLIRSACQVYLMVFVLND---HCSSVGPLREGSA 75
Q + N + + + I ++ + R + F+L+ C G +
Sbjct: 390 QLSIENLDQSLAHYGRPKIDGELKITSVERRSKMDR-YAFLLDKALLICKRRGDSYDLKD 448
Query: 76 RSSLSEASGVSGASTRTYFNEASTLVLETLENGVKKHYLIPLSLAQKNRW--------SK 127
+L +S + S + L + G + + L + K +W S
Sbjct: 449 FVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISN 508
Query: 128 KGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETT 187
+ N H F T C C+ L R QGY C C HK+C R
Sbjct: 509 IYPENATANGHDFQMFSFEETTSC-KACQMLLRGTFYQGYRCHRCRASAHKECLGRVPPC 567
Query: 188 CPHSTIQHLELNKDRIELR 206
H + KD++ R
Sbjct: 568 GRHGQDFPGTMKKDKLHRR 586
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding
domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
g.49.1.1
Length = 84
Score = 40.4 bits (94), Expect = 4e-05
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189
H ++ +LP C +C K L Q + C C H C T C
Sbjct: 28 HQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCS 79
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 42.9 bits (101), Expect = 5e-05
Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 13/173 (7%)
Query: 19 QQQLNNQNNNNNNNKSTLIIHSVQRVDLIRSACQVYLMVFVLND---HCSSVGPLREGSA 75
Q + N + + N I ++ + R + F+L+ C G + A
Sbjct: 218 QLSIENLDQSLANYGRPKIDGELKITSVERRSKT-DRYAFLLDKALLICKRRGDSYDLKA 276
Query: 76 RSSLSEASGVSGASTRTYFNEASTLVLETLENGVKKHYLIPLSLAQKNRW--------SK 127
+L +S + S + L + G + + L + K +W S
Sbjct: 277 SVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISN 336
Query: 128 KGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQC 180
+ N H F T C+ C L R QGY C C HK+C
Sbjct: 337 IYPENATANGHDFQMFSFEETTSCKACQMLL-RGTFYQGYRCYRCRAPAHKEC 388
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 6e-05
Identities = 30/218 (13%), Positives = 57/218 (26%), Gaps = 56/218 (25%)
Query: 45 DLIRSACQVYLMVFVLNDHCSSVGP-LREGSARSSLSEASGVSGASTRTYFNEASTLVLE 103
DL R S + +R+G A + +T E+S VLE
Sbjct: 317 DLPREVLTTNPR------RLSIIAESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLE 367
Query: 104 TLENGVKKHYLIPLSLAQKNRWSKKGTKLHIFNDHTFIAKHL------------PGGTVC 151
E +K + +L +F I L V
Sbjct: 368 PAE--YRKMF----------------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 152 QMCCKPLARRLGKQG-YECRDCHVKCHKQCHVRTETTCPHSTIQHLELNKDRIELRQQNR 210
++ L + K+ +++ + H +I ++ +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---HRSI---------VDHYNIPK 457
Query: 211 WSKKGTKLHIFND---HTFIAKHLPGTLYTNSPFYFRR 245
+ + D ++ I HL + FR
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Score = 32.1 bits (72), Expect = 0.19
Identities = 46/280 (16%), Positives = 79/280 (28%), Gaps = 69/280 (24%)
Query: 5 VAESALRDLKRNQQQQQLNNQN---NNNNNNKSTLIIHSVQRVDLIRSACQVYLMVFVLN 61
VA K Q +++ + N N N ++ +Q L+ Q+ +
Sbjct: 166 VALDVCLSYKV---QCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLY---QIDPNWTSRS 217
Query: 62 DHCSSVGPLREGSARSSLSEA-------------SGVSGASTRTYFN-EASTLVL----- 102
DH S++ LR S ++ L V A FN L+
Sbjct: 218 DHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 103 --ETLENGVKKHYLIPLSLAQKNRWSKKGTKLHIFNDHTFI-AKHLPGGTVCQMC-CKPL 158
+ L H +SL + + + + LP ++ P
Sbjct: 277 VTDFLSAATTTH----ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPR 328
Query: 159 ARRLGKQGYECRDC--------HVKCHKQCHVRTETTCPHSTIQHLELNKDRIELRQQNR 210
L RD HV C K + S++ LE E R+
Sbjct: 329 R--LSIIAESIRDGLATWDNWKHVNCDKLTTIIE------SSLNVLEPA----EYRKMFD 376
Query: 211 WSKKGTKLHIFNDHTFIAKHLPGTLYTNSPFYFRRDSIRK 250
+L +F I L ++ + + K
Sbjct: 377 ------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding
protein, signaling protein; NMR {Mus musculus} SCOP:
g.49.1.1 PDB: 1kbf_A
Length = 49
Score = 36.1 bits (83), Expect = 6e-04
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 11/53 (20%)
Query: 129 GTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCH 181
G+ H F+ ++++ VC +C K + G +C+ C +KCH +C
Sbjct: 1 GSVTHRFSTKSWLS------QVCNVCQKSMI-----FGVKCKHCRLKCHNKCT 42
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 36.8 bits (84), Expect = 0.001
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 144 HLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHST 192
G C +C + L LG C DC +C V T PH
Sbjct: 51 AGDGVNRCILCGEQL-GMLGSASVVCEDCKKNVCTKCGVETSNNRPHPV 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.006
Identities = 39/233 (16%), Positives = 64/233 (27%), Gaps = 82/233 (35%)
Query: 64 CSSVGPLREGSARSSLSEASG----------VSGASTRTYFNEASTLVLETL-ENGVKKH 112
+G G RS L A+G ++ + F + + L GV+ +
Sbjct: 253 AKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 113 -----YLIPLSLAQKNRWSKKGTK---LHI--------------FNDHTFIAKHL----- 145
+P S+ + + + +G L I N H K +
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 146 --PGGTVCQMCCKP------LARRLGKQGYECRDCHVKC---HKQCHV----RT------ 184
V P L L K K Q + R
Sbjct: 372 NGAKNLV---VSGPPQSLYGLNLTLRK---------AKAPSGLDQSRIPFSERKLKFSNR 419
Query: 185 --ETTCP-HSTIQHLELNKDRI--ELRQQN-RWSKKGTKLHIFNDHTFIAKHL 231
P HS L D I +L + N ++ K ++ ++ TF L
Sbjct: 420 FLPVASPFHS--HLLVPASDLINKDLVKNNVSFNAKDIQIPVY--DTFDGSDL 468
Score = 35.8 bits (82), Expect = 0.015
Identities = 43/256 (16%), Positives = 75/256 (29%), Gaps = 83/256 (32%)
Query: 9 ALRDLKRNQQQQQLNNQNNNNNNNKSTLIIHSVQRVDLIRSACQVYLMVFVLNDHCSSVG 68
++ +L + Q Q +N N++ K + + L+ A V+ G
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQ---VE----ISLVNGAKN-----LVV------SG 381
Query: 69 P----------LREGSARSSLSEASGVSGASTRTYFNE-ASTLVLETLENGVKKH--YL- 114
P LR+ A S L + +R F+E L H L
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQ--------SRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 115 -----IPLSLAQKN-RWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYE 168
I L + N ++ K ++ ++ TF L ++ ++ R+
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVY--DTFDGSDL------RVLSGSISERI------ 479
Query: 169 CRDCHVKCHKQCHVRTETTCPHSTIQH-LELNKDRI----ELRQQNRWSKKGTKLHIFND 223
T H L+ L +N K GT + +
Sbjct: 480 ---VDCIIRLPVKW---ETTTQFKATHILDFGPGGASGLGVLTHRN---KDGTGVRV--- 527
Query: 224 HTFIAKHLPGTLYTNS 239
I + GTL N
Sbjct: 528 ---I---VAGTLDINP 537
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 30.3 bits (67), Expect = 0.29
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 121 QKNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQC 180
++ + K + T C C +P R L +C +C + K C
Sbjct: 41 ERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPY-RLLLNSRRQCLECSLFVCKSC 99
Query: 181 HVRTETT 187
Sbjct: 100 SHAHPEE 106
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 29.7 bits (66), Expect = 0.69
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 10/45 (22%)
Query: 151 CQMCCKPLARRLGKQGYECRDCHVKCHKQC-----HVRTETTCPH 190
C +C L QG C C ++ H C E CPH
Sbjct: 183 CNICHSLL-----IQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 222
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 29.7 bits (67), Expect = 0.73
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 165 QGYECRDCHVKCHKQCHVRTETTCPH 190
G + + +C ++ H T
Sbjct: 37 YGIKVKGVRGQCDRRRHETAATEIGG 62
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 29.0 bits (65), Expect = 1.9
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 112 HYLIPLSLAQKNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRD 171
+ + L + D +++ + C C P + + G C
Sbjct: 446 NLQQTGGKYSYLKVGHWAETLSLDVDSIHWSRNSVPTSQCSDPCAPNEMKNMQPGDVC-- 503
Query: 172 CH--VKCHKQCHVRTETTC 188
C + C ++ E TC
Sbjct: 504 CWICIPCEPYEYLVDEFTC 522
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 26.4 bits (58), Expect = 2.7
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 150 VCQMCCKPLARRLGKQGYECRDCHVKCHKQC-----HVRTETTCPH 190
+C +C L QG C C ++ H C E CPH
Sbjct: 17 ICNIC-----HSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 57
>1w9z_A VP9, bannavirus VP9; virus coat protein, dsRNA virus, outer core
protein; 2.6A {Banna virus}
Length = 283
Score = 27.9 bits (61), Expect = 2.8
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 23/154 (14%)
Query: 45 DLIRSACQVYLMVFVLNDHCSSVGPLREGSARSSLSEASGVSGASTR-TYFNEASTLVLE 103
D+IR A ++LM + + + R + A+ ++G + + TY + + L
Sbjct: 73 DVIRFAAWLFLM------NGQKLMIANNVAVRMGMQYATNLAGNNVKITYVTSNNVVKLG 126
Query: 104 TLENGVKKHYLIPLSLAQKNRWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLG 163
+ GV N +S KG+ L I +H I+ + G VC + L+
Sbjct: 127 HIAAGV-----------LANPYSNKGSGLFITYEHNLISNQIETGKVCVLFITSLSTTAS 175
Query: 164 K-QGYECRDCHVKCHK----QCHVRTETTCPHST 192
+ C V + ET+C T
Sbjct: 176 STNSFAYSACSVPIEDWDFNMIKLTAETSCASLT 209
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 26.7 bits (59), Expect = 6.0
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 150 VCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTI 193
C +C + L G + Y D + C + S
Sbjct: 95 ACVVCKRQL--ATGDEFYLMEDSRLVCKADYETAKQGGSGGSGG 136
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 6.9
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 6 AESALRDLKRNQQQQQLNNQNNNNNNNKSTL 36
A+ L + + Q +Q N+ NN +K+
Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 26.9 bits (59), Expect = 7.4
Identities = 6/55 (10%), Positives = 13/55 (23%), Gaps = 2/55 (3%)
Query: 126 SKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQC 180
+ + + +C C L + + C C + C
Sbjct: 353 EIRERLGVSLGERPPTLVPVTHVMMCMNCGCD--FSLTLRRHHCHACGKIVCRNC 405
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A
{Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Length = 184
Score = 26.0 bits (58), Expect = 9.8
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 15/46 (32%)
Query: 149 TVCQMCCKPLA---RRLGKQG----------YE--CRDCHVKCHKQ 179
VC C + A ++ Y CRDC+ K+
Sbjct: 138 AVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYNTLKKR 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.402
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,614,701
Number of extensions: 197457
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 70
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)