RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1485
(252 letters)
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 58.1 bits (140), Expect = 5e-12
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189
H ++ +LP C +C K L Q + C C H C T C
Sbjct: 28 HQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCS 79
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 51.2 bits (122), Expect = 9e-10
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
H F + T C C L L KQG +C DC + H +C + C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLL-WGLVKQGLKCEDCGMNVHHKCREKVANLC 50
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 51.2 bits (122), Expect = 1e-09
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 138 HTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189
H F G C+ C + L QG C DC + HKQC C
Sbjct: 5 HNFKVHTFRGPHWCEYCANFM-WGLIAQGVRCSDCGLNVHKQCSKHVPNDCQ 55
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
[TaxId: 10117]}
Length = 66
Score = 49.7 bits (118), Expect = 4e-09
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 136 NDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCP 189
N H F T C C L L QG +C C + H++C + C
Sbjct: 7 NKHKFRLHSYSSPTFCDHCGSLL-YGLVHQGMKCSCCEMNVHRRCVRSVPSLCG 59
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 48.8 bits (116), Expect = 5e-09
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 136 NDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTC 188
H F K C +C K L G+ C+ C K H+ C + T C
Sbjct: 2 TTHNFARKTFLKLAFCDICQKFL-----LNGFRCQTCGYKFHEHCSTKVPTMC 49
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 49
Score = 44.0 bits (104), Expect = 3e-07
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 129 GTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVR 183
G+ H F+ +++++ C +C K + G +C+ C +KCH +C
Sbjct: 1 GSVTHRFSTKSWLSQV------CNVCQKSM-----IFGVKCKHCRLKCHNKCTKE 44
>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 214
Score = 30.2 bits (67), Expect = 0.20
Identities = 11/93 (11%), Positives = 19/93 (20%)
Query: 148 GTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQHLELNKDRIELRQ 207
G C +AR L + + + + + Q
Sbjct: 64 GAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ 123
Query: 208 QNRWSKKGTKLHIFNDHTFIAKHLPGTLYTNSP 240
+ T +F DH L
Sbjct: 124 LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCG 156
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 28.2 bits (62), Expect = 0.48
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 147 GGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRT 184
G C +C + L LG C DC +C V T
Sbjct: 47 GVNRCILCGEQL-GMLGSASVVCEDCKKNVCTKCGVET 83
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 28.6 bits (62), Expect = 0.68
Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 11/133 (8%)
Query: 124 RWSKKGTKLHIFNDHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVR 183
++ KK K+ L ++ ++ + ++ E +
Sbjct: 33 KYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD 92
Query: 184 TETTCPHS----------TIQHLELNKDRIELRQQNRWSKKGTKLHI-FNDHTFIAKHLP 232
+I H E + ++ R K K + F D + L
Sbjct: 93 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLK 152
Query: 233 GTLYTNSPFYFRR 245
+L ++ +
Sbjct: 153 ESLVVGQKYWISK 165
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 25.5 bits (56), Expect = 1.3
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 3/32 (9%)
Query: 142 AKHLPGGTVCQMCCKPLARRLGKQGYECRDCH 173
+ G C C L + Y C C
Sbjct: 9 LEEYNGERFCYGCQGELK---DQHVYVCAVCQ 37
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5,
RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.2 bits (58), Expect = 1.5
Identities = 4/39 (10%), Positives = 16/39 (41%)
Query: 137 DHTFIAKHLPGGTVCQMCCKPLARRLGKQGYECRDCHVK 175
+H++++ ++ Q K +A ++ + +
Sbjct: 18 EHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAIT 56
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 26.4 bits (57), Expect = 2.6
Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 3/97 (3%)
Query: 156 KPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQHLELNKDRIELRQQNRWSKKG 215
P+A L K GY + + + + D + +G
Sbjct: 14 APMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEG 73
Query: 216 TKLHIFNDHTFIAKHLPGTLYTNSPFYFRRDSIRKRK 252
+D +A PGTL + +
Sbjct: 74 L---YLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA 107
>d3caoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio africanus
[TaxId: 873]}
Length = 103
Score = 24.7 bits (53), Expect = 5.6
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 155 CKPLARRLGKQGYECRDCHVK 175
C + K C +CHVK
Sbjct: 82 CWGCHEKQAKGPVMCGECHVK 102
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 25.2 bits (54), Expect = 5.7
Identities = 8/59 (13%), Positives = 12/59 (20%)
Query: 156 KPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQHLELNKDRIELRQQNRWSKK 214
AR L GY + + L + IE +
Sbjct: 23 GLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENM 81
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 25.1 bits (53), Expect = 8.1
Identities = 10/98 (10%), Positives = 23/98 (23%)
Query: 155 CKPLARRLGKQGYECRDCHVKCHKQCHVRTETTCPHSTIQHLELNKDRIELRQQNRWSKK 214
+ LA++L + Y+ K + E +Q
Sbjct: 19 GRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLAT 78
Query: 215 GTKLHIFNDHTFIAKHLPGTLYTNSPFYFRRDSIRKRK 252
G + +Y + + ++ K
Sbjct: 79 GGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDK 116
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 25.3 bits (55), Expect = 10.0
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 149 TVCQMCCKPLARRLGKQGYECRDCHVKCHKQCHVRTETT 187
C C + G+ C C K+ + T
Sbjct: 516 DKCFTCGSTHEMTPTENGFVCSICGETDPKKMNTIRRTC 554
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.402
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 902,294
Number of extensions: 40963
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 37
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)