Query psy14851
Match_columns 217
No_of_seqs 113 out of 128
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 22:23:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db0_A 253AA long hypothetical 69.5 9.4 0.00032 33.1 6.2 81 64-148 129-220 (253)
2 1rbl_M Ribulose 1,5 bisphospha 28.3 10 0.00034 29.2 -0.5 37 3-47 68-105 (109)
3 1gk8_I Ribulose bisphosphate c 28.3 10 0.00035 30.5 -0.5 37 3-47 87-124 (140)
4 3zxw_B Ribulose bisphosphate c 28.2 10 0.00035 29.6 -0.5 37 3-47 67-104 (118)
5 1svd_M Ribulose bisphosphate c 26.1 11 0.00039 29.0 -0.5 36 3-46 70-106 (110)
6 1wdd_S Ribulose bisphosphate c 25.0 13 0.00043 29.5 -0.5 38 3-48 80-118 (128)
7 4f0h_B Ribulose bisphosphate c 21.9 17 0.00057 29.2 -0.4 37 3-47 62-101 (138)
8 1bxn_I Rubisco, protein (ribul 21.1 16 0.00056 29.2 -0.5 33 3-43 62-95 (139)
9 1xrx_A SEQA protein; protein f 19.1 46 0.0016 22.2 1.4 31 109-140 9-39 (50)
10 1eyv_A NUSB protein, N-utilizi 18.6 48 0.0017 26.0 1.7 49 7-77 98-146 (156)
No 1
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=69.49 E-value=9.4 Score=33.09 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhccccCchHHHHHHH-----------HhhhccchhhhhhcccCCcchhhhHHHHHHHH
Q psy14851 64 SISETLAKNEPHLTLEFLEECISGFKQSTIVLKHLCL-----------EYMTPWLPNLVKFCKQSDEGKRQQRVLGIMTK 132 (217)
Q Consensus 64 ~IS~~LA~~~PeLTleFL~E~~~g~e~~s~~~k~lcL-----------~YMsPWL~NL~~fv~~~de~g~~~rv~~iiR~ 132 (217)
..-+.+|+..|+|-....++++.-++.-....|...| .|.+|.+|.|..-.+-+|+--| +.-+..
T Consensus 129 yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVR----aSaVEt 204 (253)
T 2db0_A 129 YALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR----ASAVEA 204 (253)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHH----HHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhh----HHHHHH
Confidence 4567889999999999999999888866677776665 4778999999876663333222 336778
Q ss_pred HhhhhhccccccHHHH
Q psy14851 133 LIELTIKEVEMYPSIQ 148 (217)
Q Consensus 133 LI~LTi~e~~~~~~iq 148 (217)
|+.|.-..|.+-+.+.
T Consensus 205 L~~lA~~npklRkii~ 220 (253)
T 2db0_A 205 LVHLATLNDKLRKVVI 220 (253)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHH
Confidence 8888877765444443
No 2
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=28.34 E-value=10 Score=29.22 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=28.5
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCcccceeee
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIVY 47 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~l 47 (217)
.+|+.|+ +|++++|++-. |=.+||.+.+-|.=++|+.
T Consensus 68 ~~Vl~Ele~C~k~~p~~yV--------RligfD~~~q~q~~sfIv~ 105 (109)
T 1rbl_M 68 QQVLDEVRECRSEYGDCYI--------RVAGFDNIKECQTSSFIVH 105 (109)
T ss_dssp HHHHHHHHHHHHHCTTSEE--------EEEEEETTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCeE--------EEEEEeCCCcEEEEEEEee
Confidence 4788887 79999999866 6779999997665555543
No 3
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=28.28 E-value=10 Score=30.51 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=31.0
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCcccceeee
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIVY 47 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~l 47 (217)
.+||.|+ +|++++|++-. |=.+||.+.+.|.=++|+.
T Consensus 87 ~qVl~El~~C~k~~P~~YV--------RligfDn~~q~q~~sfIV~ 124 (140)
T 1gk8_I 87 MQVLREIVACTKAFPDAYV--------RLVAFDNQKQVQIMGFLVQ 124 (140)
T ss_dssp HHHHHHHHHHHHHCTTSEE--------EEEEEETTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCeE--------EEEEEeCCCCEEEEEEEeE
Confidence 4789997 79999999876 6779999999888777765
No 4
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=28.18 E-value=10 Score=29.62 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=29.8
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCcccceeee
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIVY 47 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~l 47 (217)
.+|+.|+ +|++++|++-. |=.+||...+.|.=++|+.
T Consensus 67 ~~Vl~Ele~C~k~~p~~yV--------RliGfD~~~q~q~~sfIv~ 104 (118)
T 3zxw_B 67 QDVLNEVQQCRSEYPNCFI--------RVVAFDNIKQCQVMSFIVY 104 (118)
T ss_dssp HHHHHHHHHHHHHCTTSEE--------EEEEEETTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceE--------EEEEEeCCcCEEEEEEEEE
Confidence 4688997 69999999766 6789999998777666654
No 5
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=26.15 E-value=11 Score=28.96 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=28.0
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCcccceee
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIV 46 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~ 46 (217)
.+|+.|+ +|++++|++-. |=.+||.+.+-|.=++|+
T Consensus 70 ~~Vl~El~~C~k~~p~~yV--------RligfD~~~q~q~~sfIv 106 (110)
T 1svd_M 70 DNVLAEIEACRSAYPTHQV--------KLVAYDNYAQSLGLAFVV 106 (110)
T ss_dssp HHHHHHHHHHHHHSTTSEE--------EEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCeE--------EEEEEeCCCCEEEEEEEe
Confidence 4788887 79999999866 667999998755555554
No 6
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=25.03 E-value=13 Score=29.51 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=30.8
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCcccceeeec
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIVYG 48 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~l~ 48 (217)
.+||.|+ +|++++|++-. |=-+||...+.|.=++|+.-
T Consensus 80 ~~Vl~El~~C~k~~P~~YV--------RligfDn~~q~q~~sfIv~R 118 (128)
T 1wdd_S 80 TQVLKELEEAKKAYPDAFV--------RIIGFDNVRQVQLISFIAYK 118 (128)
T ss_dssp HHHHHHHHHHHHHCTTSEE--------EEEEEETTTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCeE--------EEEEEeCCCCEEEEEEEEEC
Confidence 4789998 79999999866 66799999998777776654
No 7
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=21.86 E-value=17 Score=29.20 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=28.8
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCccc--ceeee
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPR--ALIVY 47 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~--a~~~l 47 (217)
.+||.|+ +|++++|++-. |=.+||.+.+.|++ ++||.
T Consensus 62 ~~Vl~Ele~C~k~~p~~YV--------RliGfDn~~~~qs~~~sfIV~ 101 (138)
T 4f0h_B 62 APVLFEINACRKAKSNFYI--------KVVGFSSERGIESTIISFIVN 101 (138)
T ss_dssp HHHHHHHHHHHHHTTTSEE--------EEEEEECCTTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCeE--------EEEEEeCCCceEEEEEEEEEe
Confidence 4788887 79999999876 67899999988755 44443
No 8
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=21.12 E-value=16 Score=29.23 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=27.1
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCcccc
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRA 43 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a 43 (217)
.+|+.|+ +|++++|++-. |=.+||++.+.|++.
T Consensus 62 ~~Vl~Ele~C~k~~p~~YV--------RliGfD~~~~~qs~~ 95 (139)
T 1bxn_I 62 AGILMEINNARNTFPNHYI--------RVTAFDSTHTVESVV 95 (139)
T ss_dssp HHHHHHHHHHHHHCSSSEE--------EEEEECTTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCeE--------EEEEEeCCCceEEEE
Confidence 4788887 79999999866 678999999888544
No 9
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=19.07 E-value=46 Score=22.24 Aligned_cols=31 Identities=6% Similarity=0.247 Sum_probs=18.5
Q ss_pred hhhhhcccCCcchhhhHHHHHHHHHhhhhhcc
Q psy14851 109 NLVKFCKQSDEGKRQQRVLGIMTKLIELTIKE 140 (217)
Q Consensus 109 NL~~fv~~~de~g~~~rv~~iiR~LI~LTi~e 140 (217)
.||+|+...-..-.|. .++|+|+|..+.-..
T Consensus 9 elY~YIas~t~~igEs-aSdiLRRll~l~~~~ 39 (50)
T 1xrx_A 9 ELYSYIASHTKHIGES-ASDILRRMLKFSAAS 39 (50)
T ss_dssp HHHHHHHTTCSSTTCC-HHHHHHHHHTC----
T ss_pred HHHHHHHHhchhhccC-HHHHHHHHHcCCccc
Confidence 4677777533333344 788999999998764
No 10
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=18.65 E-value=48 Score=26.02 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=31.3
Q ss_pred hhhhhhccCCCchhHHHHHHHHhHhhcccCCCCcccceeeecceeeeecCCchHHHHHHHHHHhhcCCCCc
Q psy14851 7 VEWVCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIVYGCICLCIPANNTIFIKSISETLAKNEPHLT 77 (217)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~l~s~~l~VP~d~t~FVv~IS~~LA~~~PeLT 77 (217)
.|.--+.++|.---.++...||+.|.-+ +...||..|-.++++..+++-
T Consensus 98 yel~~~~~iP~~v~InEaVelak~~~~~----------------------~~~~fVNgVLr~i~r~~~~l~ 146 (156)
T 1eyv_A 98 WELLHAADVPEPVVVDEAVQLAKELSTD----------------------DSPGFVNGVLGQVMLVTPQLR 146 (156)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHHHHHSCT----------------------THHHHHHHHHHHHC-------
T ss_pred HHHHHcCCCCchhHHHHHHHHHHHhCCC----------------------ccccchHHHHHHHHHhHHhhc
Confidence 4555566889877789999999887421 223599999999998776654
Done!