Query psy14851
Match_columns 217
No_of_seqs 113 out of 128
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 22:23:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14851.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14851hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bwvs_ d.73.1.1 (S:) Ribulose 43.0 2.5 0.00018 32.1 0.1 37 3-47 62-101 (138)
2 d1bxni_ d.73.1.1 (I:) Ribulose 42.6 1.9 0.00014 32.4 -0.6 37 3-47 62-101 (129)
3 d1xrxa1 a.43.1.7 (A:1-35) SeqA 36.0 7.3 0.00053 22.8 1.4 27 109-136 9-35 (35)
4 d1fc3a_ a.4.6.3 (A:) Spo0A {Ba 30.3 14 0.001 27.0 2.5 55 130-192 29-87 (119)
5 d1ey1a_ a.79.1.1 (A:) Antiterm 30.3 18 0.0013 25.4 3.2 45 6-72 89-133 (139)
6 d1wmga_ a.77.1.2 (A:) Netrin r 25.4 34 0.0025 22.6 3.8 75 3-92 7-81 (90)
7 d1svdm1 d.73.1.1 (M:3-110) Rib 23.8 6.3 0.00046 28.5 -0.5 36 3-46 68-104 (108)
8 d2p6va1 a.277.1.1 (A:582-678) 22.6 19 0.0014 25.4 2.0 45 106-151 17-63 (97)
9 d1eyva_ a.79.1.1 (A:) Antiterm 20.4 22 0.0016 24.7 1.9 28 6-33 89-116 (131)
10 d1wdds_ d.73.1.1 (S:) Ribulose 19.5 8.6 0.00062 28.4 -0.6 37 3-47 80-117 (122)
No 1
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=42.98 E-value=2.5 Score=32.14 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.9
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCccc--ceeee
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPR--ALIVY 47 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~--a~~~l 47 (217)
.+|+.|+ +|++++|++-. |=.+||..++.|.+ ++||.
T Consensus 62 ~~Vl~Ele~C~k~~p~~YV--------RliGfDn~rq~Q~~~~sfIV~ 101 (138)
T d1bwvs_ 62 AAVLFEINACRKARSNFYI--------KVVGFSSVRGIESTIISFIVN 101 (138)
T ss_dssp HHHHHHHHHHHHHCTTSEE--------EEEEEECCTTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCcceE--------EEEEEeCccceeEEEEEEEEe
Confidence 4788887 79999999876 67899999999976 55544
No 2
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=42.63 E-value=1.9 Score=32.37 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=30.1
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCccc--ceeee
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPR--ALIVY 47 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~--a~~~l 47 (217)
.+||.|+ +|+++.|++-. |=.+||++++.|.+ ++||.
T Consensus 62 ~~Vl~ele~c~~e~p~~YV--------RliG~D~~r~~q~~~~sfIV~ 101 (129)
T d1bxni_ 62 AGILMEINNARNTFPNHYI--------RVTAFDSTHTVESVVMSFIVN 101 (129)
T ss_dssp HHHHHHHHHHHHHCSSSEE--------EEEEECTTTCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHCCcCEE--------EEEEEeCCCceEEeEEEEEEE
Confidence 4788887 79999999766 67899999999987 55543
No 3
>d1xrxa1 a.43.1.7 (A:1-35) SeqA {Escherichia coli [TaxId: 562]}
Probab=35.96 E-value=7.3 Score=22.82 Aligned_cols=27 Identities=7% Similarity=0.277 Sum_probs=17.9
Q ss_pred hhhhhcccCCcchhhhHHHHHHHHHhhh
Q psy14851 109 NLVKFCKQSDEGKRQQRVLGIMTKLIEL 136 (217)
Q Consensus 109 NL~~fv~~~de~g~~~rv~~iiR~LI~L 136 (217)
.||+|+...-+.-.+. .++|+|+|..|
T Consensus 9 eLY~yIas~t~~iGEs-aSdILRRll~l 35 (35)
T d1xrxa1 9 ELYSYIASHTKHIGES-ASDILRRMLKF 35 (35)
T ss_dssp HHHHHHHTTCSSTTCC-HHHHHHHHHTC
T ss_pred HHHHHHHHhhhHhccC-HHHHHHHHhcC
Confidence 4778877533333344 78899998764
No 4
>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=30.35 E-value=14 Score=26.98 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHhhhhhccccccHHHHHHHhhhhhhcchhhhhccccchhHHHHHHHHHhh----CCCCcccccc
Q psy14851 130 MTKLIELTIKEVEMYPSIQAKIWGSIGQVHLIRSACQVYLIVCVLIRYQVDLI----GRPDQVYLSG 192 (217)
Q Consensus 130 iR~LI~LTi~e~~~~~~iq~~IW~~l~~~~~L~~~~~~~~i~~vldE~i~~al----gs~~~e~~~~ 192 (217)
+|.=|.+.+.+++.-..+-..+.+.|++.-.- +..=||.=|.||| ++.|.+..+.
T Consensus 29 l~~AI~l~~~d~~~l~~itK~LYp~IA~ky~T--------T~s~VERaIRhaIevaW~rG~~~~l~~ 87 (119)
T d1fc3a_ 29 LREAIAMVYHDIELLGSITKVLYPDIAKKYNT--------TASRVERAIRHAIEVAWSRGNLESISS 87 (119)
T ss_dssp HHHHHHHHHHCGGGGGGTTTTHHHHHHHHHTS--------CHHHHHHHHHHHHHHHHHSSCTTTTHH
T ss_pred HHHHHHHHHHCHHHHHhHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34448899999999998998999999988776 7777799999998 5566555543
No 5
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=30.32 E-value=18 Score=25.44 Aligned_cols=45 Identities=22% Similarity=0.193 Sum_probs=34.3
Q ss_pred hhhhhhhccCCCchhHHHHHHHHhHhhcccCCCCcccceeeecceeeeecCCchHHHHHHHHHHhhc
Q psy14851 6 IVEWVCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIVYGCICLCIPANNTIFIKSISETLAKN 72 (217)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~l~s~~l~VP~d~t~FVv~IS~~LA~~ 72 (217)
+.|..-+.++|.--..+++..||+.|.-+..+ .||..|-+++|+.
T Consensus 89 ~~El~~~~~~p~~viInE~Velak~~~~~~~~----------------------~fVNgVL~~i~k~ 133 (139)
T d1ey1a_ 89 LYELSKRSDVPYKVAINEAIELAKSFGAEDSH----------------------KFVNGVLDKAAPV 133 (139)
T ss_dssp HHHHHSCSSCCSHHHHHHHHHHTTTTTCSSSS----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHccCCCceehHHHHHHHHHHhCCCCcc----------------------chHHHHHHHHHHH
Confidence 35655567899988889999999888543333 4999999999874
No 6
>d1wmga_ a.77.1.2 (A:) Netrin receptor UNC5B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.37 E-value=34 Score=22.58 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=46.6
Q ss_pred chhhhhhhhhccCCCchhHHHHHHHHhHhhcccCCCCcccceeeecceeeeecCCchHHHHHHHHHHhhcCCCCcHHHHH
Q psy14851 3 QEVIVEWVCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIVYGCICLCIPANNTIFIKSISETLAKNEPHLTLEFLE 82 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~l~s~~l~VP~d~t~FVv~IS~~LA~~~PeLTleFL~ 82 (217)
.++--+++++-|.|+..- +-|..||.+..|+. -. + .+.. -.+++.-+ +-.-.+++.|..|..=|.
T Consensus 7 ~~~r~~L~~~LD~~~~~g-~dWr~LA~~Lg~~~-~i-~-----~~~~-----~~sPt~~l--L~~w~~~~~~~~tv~~L~ 71 (90)
T d1wmga_ 7 LSIRQKICSSLDAPNSRG-NDWRLLAQKLSMDR-YL-N-----YFAT-----KASPTGVI--LDLWEARQQDDGDLNSLA 71 (90)
T ss_dssp HHHHHHHHHHHHCGGGTT-SSHHHHHHHTTCGG-GH-H-----HHHT-----SSCHHHHH--HHHHHHHCCSTTTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCC-ccHHHHHHHhCCcH-HH-H-----HHHh-----CCCchhhH--HHHHHHHhCCCCcHHHHH
Confidence 345556778888776433 67999999999973 11 1 1111 12333322 223335778888999888
Q ss_pred HHHhccccCc
Q psy14851 83 ECISGFKQST 92 (217)
Q Consensus 83 E~~~g~e~~s 92 (217)
.++..+++.+
T Consensus 72 ~~L~~i~R~D 81 (90)
T d1wmga_ 72 SALEEMGKSE 81 (90)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHcCcHH
Confidence 8888777644
No 7
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=23.77 E-value=6.3 Score=28.51 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=27.9
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCcccceee
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIV 46 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~ 46 (217)
.+|+.|+ +|++++|+.-. |=.+||.+.+-|.-++||
T Consensus 68 ~~Vl~Ele~c~~~~p~~YV--------RliG~D~~~q~q~~~fIV 104 (108)
T d1svdm1 68 DNVLAEIEACRSAYPTHQV--------KLVAYDNYAQSLGLAFVV 104 (108)
T ss_dssp HHHHHHHHHHHHHSTTSEE--------EEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEE--------EEEEEcCCccEEEEEEEE
Confidence 4788888 89999999765 678999988755555554
No 8
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.59 E-value=19 Score=25.43 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=32.8
Q ss_pred cchhhhhhcccCCcchhh--hHHHHHHHHHhhhhhccccccHHHHHHH
Q psy14851 106 WLPNLVKFCKQSDEGKRQ--QRVLGIMTKLIELTIKEVEMYPSIQAKI 151 (217)
Q Consensus 106 WL~NL~~fv~~~de~g~~--~rv~~iiR~LI~LTi~e~~~~~~iq~~I 151 (217)
.+.+|-++.- ++...++ +||+.+|..|++-++.-.||..-+|+..
T Consensus 17 FL~tLi~l~s-~~~~spe~~~~Vr~LV~~L~~~~i~~EEF~~~Lq~~l 63 (97)
T d2p6va1 17 FLSTLIKLAS-SGKQSTETAANVKELVQNLLDGKIEAEDFTSRLYREL 63 (97)
T ss_dssp HHHHHHHHHT-SSSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCCCCchHHHHHHHHHHHHHhCCcCHHHHHHHHHHHh
Confidence 4566666543 3233344 5799999999999999999988888654
No 9
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.35 E-value=22 Score=24.73 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.3
Q ss_pred hhhhhhhccCCCchhHHHHHHHHhHhhc
Q psy14851 6 IVEWVCMRDIPDCDWLNTWTSLAKNFAF 33 (217)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 33 (217)
+.|..-+.++|..--.++|.+||+.|.-
T Consensus 89 ~~El~~~~~~p~~viInE~V~lak~~~~ 116 (131)
T d1eyva_ 89 VWELLHAADVPEPVVVDEAVQLAKELST 116 (131)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcccCCchhHHHHHHHHHHHhCC
Confidence 3576678899998899999999998853
No 10
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=19.49 E-value=8.6 Score=28.36 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=29.8
Q ss_pred chhhhhh-hhhccCCCchhHHHHHHHHhHhhcccCCCCcccceeee
Q psy14851 3 QEVIVEW-VCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIVY 47 (217)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~a~~~l 47 (217)
.+|+.|+ +|+++.|+.-. |=.+||.+.+.|.-++||.
T Consensus 80 ~~Vl~Ele~C~k~~p~~YV--------RligfD~~~q~q~~sfIV~ 117 (122)
T d1wdds_ 80 TQVLKELEEAKKAYPDAFV--------RIIGFDNVRQVQLISFIAY 117 (122)
T ss_dssp HHHHHHHHHHHHHCTTSEE--------EEEEEETTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceE--------EEEEEeCccCEEEEEEEEE
Confidence 4788887 79999999866 6789999998776666654
Done!