RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14851
         (217 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.3 bits (75), Expect = 0.068
 Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 35/192 (18%)

Query: 2   NQEVIVEWVCMRDIPDCDWLNTWTSLAKNFAFCYN-PALQPRALIVYGCICLCIPANNTI 60
            ++  V+    +D+ D    +  +   +               L ++  +         +
Sbjct: 25  FEDAFVDNFDCKDVQDMP-KSILSK--EEIDHIIMSKDAVSGTLRLFWTLLS---KQEEM 78

Query: 61  FIKSISETLAKNEPHLTLEFLEECISGFKQSTIVLKHLCLEYMTPWLPNLVKFCKQSDEG 120
             K + E L  N   L      E     +Q +++ + + +E       +   F K +   
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQ----RQPSMMTR-MYIEQRDRLYNDNQVFAKYNV-- 131

Query: 121 KRQQRVLGIMTKLIELTIKEVEMYPSIQAKIWGSIG---QVHLIRSACQVYLIVCVLIRY 177
            R Q  L +   L+EL        P+    I G +G      +    C  Y + C +   
Sbjct: 132 SRLQPYLKLRQALLELR-------PAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKM--- 180

Query: 178 QVDLIGRPDQVY 189
                    +++
Sbjct: 181 -------DFKIF 185


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.7 bits (74), Expect = 0.089
 Identities = 40/241 (16%), Positives = 75/241 (31%), Gaps = 86/241 (35%)

Query: 42  RALIV-YGCI--CLCIPANNTI--------FIKSI---SETLAK-NEP----HLTLEFLE 82
           R L + +G +   L +P  +          F K +   +E  A  +EP     L  +FL 
Sbjct: 7   RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66

Query: 83  ECISGFKQSTI-----VLKHLCLEYMTPWLPN-----LVKFCKQSDEGK--RQQRVLGIM 130
              S  + S +     VL     E+   +L       L     Q ++    + + ++   
Sbjct: 67  YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126

Query: 131 TKLIELTIKEVE-MYPSI--------QAKIW---GSIGQ--------------------V 158
                +  +  +    S          A++    G  GQ                    V
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQGNTDDYFEELRDLYQTYHVLV 184

Query: 159 H-LIRSACQVYLIVCVLIR--------YQ--VDLIG-------RPDQVYLSGLRDGLPGI 200
             LI+ + +    +  LIR        +   ++++         PD+ YL  +    P I
Sbjct: 185 GDLIKFSAET---LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241

Query: 201 G 201
           G
Sbjct: 242 G 242


>2owl_A Recombination-associated protein RDGC; replication, RECA; 2.40A
           {Escherichia coli}
          Length = 303

 Score = 29.9 bits (67), Expect = 0.54
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 38  ALQPRALIVYGCICLCI-PANNTIFIKSISETLAKNEPHLTLEFLEECISGFKQSTIVLK 96
           +L PRA   +    + I   N  I +   S   A++    TL  L + +       + ++
Sbjct: 114 SLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAED----TLALLRKSLGSLPVVPLSME 169

Query: 97  HLCLEYMTPWL 107
           +     +T W+
Sbjct: 170 NPIELTLTEWV 180


>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein
           transport; 2.42A {Homo sapiens} PDB: 3ajb_A
          Length = 334

 Score = 26.6 bits (58), Expect = 6.6
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 134 IELTIKEVEMYPSIQAKIWGSIGQVHLIRSACQVYLI--VCVLIRYQVDLIGRPDQVYLS 191
            E     ++  PS + +IW  +  +   RS   VY    + VL+R Q+++IG    +YL 
Sbjct: 47  SESLTALLKNRPSNKLEIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGG--YIYLD 104

Query: 192 GLRDGLPG 199
               G  G
Sbjct: 105 NAAVGKNG 112


>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
           transport, nuclear trafficking, importin- beta, complex;
           1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
           2bku_B 3ea5_B* 3nd2_A
          Length = 861

 Score = 26.7 bits (58), Expect = 7.3
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 7/147 (4%)

Query: 4   EVIVEWVCMRDIPDCDWLNTWTSLAKNFAFCYNPALQPRALIVYGCICLCIPANNTIFIK 63
           ++I     + ++P   W      +  N        ++  +L+  G +C      +   + 
Sbjct: 117 QLIAAIADI-ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS 175

Query: 64  SISETLAK-----NEPHLTLEFLEECISGFKQSTIVLK-HLCLEYMTPWLPNLVKFCKQS 117
           S +  L            +       ++    S I +K ++  E    +L  +V    Q+
Sbjct: 176 SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA 235

Query: 118 DEGKRQQRVLGIMTKLIELTIKEVEMY 144
           ++ + Q    G + K++      ++ Y
Sbjct: 236 EDIEVQAAAFGCLCKIMSKYYTFMKPY 262


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.141    0.450 

Gapped
Lambda     K      H
   0.267   0.0512    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,324,974
Number of extensions: 185305
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 9
Length of query: 217
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,188,903
Effective search space: 531990681
Effective search space used: 531990681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)