BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14856
(734 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 19/73 (26%)
Query: 478 TLNSMDYD---------MAFCT----NLRNKGIHLKIDSTQEYGHLVDSENFD------P 518
+LNSMD ++F T +L L I ST E+G L DS+ F P
Sbjct: 228 SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTDSDAFSTGSSLMP 287
Query: 519 QKTNPEVYELIRN 531
QK NP+ ELIR+
Sbjct: 288 QKKNPDSLELIRS 300
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 19/73 (26%)
Query: 478 TLNSMDYD---------MAFCT----NLRNKGIHLKIDSTQEYGHLVDSENFD------P 518
+LNSMD ++F T +L L I ST E+G L S+ F P
Sbjct: 228 SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMP 287
Query: 519 QKTNPEVYELIRN 531
QK NP+ ELIR+
Sbjct: 288 QKKNPDSLELIRS 300
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 19/73 (26%)
Query: 478 TLNSMDYD---------MAFCT----NLRNKGIHLKIDSTQEYGHLVDSENFD------P 518
+LNSMD ++F T +L L I ST E+G L S+ F P
Sbjct: 228 SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMP 287
Query: 519 QKTNPEVYELIRN 531
QK NP+ ELIR+
Sbjct: 288 QKKNPDSLELIRS 300
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 19/73 (26%)
Query: 478 TLNSMDYD---------MAFCT----NLRNKGIHLKIDSTQEYGHLVDSENFD------P 518
+LNSMD ++F T +L L I ST E+G L S+ F P
Sbjct: 228 SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMP 287
Query: 519 QKTNPEVYELIRN 531
QK NP+ ELIR+
Sbjct: 288 QKKNPDSLELIRS 300
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 19/73 (26%)
Query: 478 TLNSMDYD---------MAFCT----NLRNKGIHLKIDSTQEYGHLVDSENFD------P 518
+LNSMD ++F T +L L I ST E+G L S+ F P
Sbjct: 228 SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMP 287
Query: 519 QKTNPEVYELIRN 531
QK NP+ ELIR+
Sbjct: 288 QKKNPDSLELIRS 300
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 19/73 (26%)
Query: 478 TLNSMDYD---------MAFCT----NLRNKGIHLKIDSTQEYGHLVDSENFD------P 518
+LNSMD ++F T +L L I ST E+G L S+ F P
Sbjct: 210 SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMP 269
Query: 519 QKTNPEVYELIRN 531
QK NP+ ELIR+
Sbjct: 270 QKKNPDSLELIRS 282
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 19/73 (26%)
Query: 478 TLNSMD------YDMAFCTNLRNKGIHLK-------IDSTQEYGHLVDSENFD------P 518
+LNSMD + + F + IHL I ST E+G L S+ F P
Sbjct: 225 SLNSMDAISERDFVVEFLSVATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMP 284
Query: 519 QKTNPEVYELIRN 531
QK NP+ ELIR+
Sbjct: 285 QKKNPDSLELIRS 297
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 499 LKIDSTQEYGHLVDSENFD------PQKTNPEVYELIRN 531
L I ST E+G L S+ F PQK NP+ ELIR+
Sbjct: 260 LIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRS 298
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 499 LKIDSTQEYGHLVDSENFD------PQKTNPEVYELIRN 531
L I ST E+G L S+ F PQK NP+ ELIR+
Sbjct: 260 LIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRS 298
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 141 DTSLYDKYPAVGSGYRYLNSGGFI--GYAKDIKELISNRSIKNEEDDQLYYALLFLDETL 198
D +L P VG Y N G + G+A + I RS KN+ +D+L Y L+
Sbjct: 258 DPNLRKNVP-VGKLDGYYNKGSIVECGFADGTWKYIQGRSDKNQANDRLTYEKTLLN--- 313
Query: 199 RTKHKIVLDTLANLFQ 214
+ I +D L +LF+
Sbjct: 314 -IEENITIDELLDLFK 328
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKO|A Chain A, Structure Of Mrna Capping Enzyme In Complex With The Cap
Analog Gpppg
Length = 330
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 141 DTSLYDKYPAVGSGYRYLNSGGFI--GYAKDIKELISNRSIKNEEDDQLYYALLFLDETL 198
D +L P VG Y N G + G+A + I RS KN+ +D+L Y L+
Sbjct: 258 DPNLRKNVP-VGKLDGYYNKGSIVECGFADGTWKYIQGRSDKNQANDRLTYEKTLLN--- 313
Query: 199 RTKHKIVLDTLANLFQ 214
+ I +D L +LF+
Sbjct: 314 -IEENITIDELLDLFK 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,888,072
Number of Sequences: 62578
Number of extensions: 1086161
Number of successful extensions: 2379
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2376
Number of HSP's gapped (non-prelim): 18
length of query: 734
length of database: 14,973,337
effective HSP length: 106
effective length of query: 628
effective length of database: 8,340,069
effective search space: 5237563332
effective search space used: 5237563332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)