RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14856
(734 letters)
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues.
Mammalian enzymes catalyse hydroxylation of collagen,
for example. Prokaryotic enzymes might catalyse
hydroxylation of antibiotic peptides. These are
2-oxoglutarate-dependent dioxygenases, requiring
2-oxoglutarate and dioxygen as cosubstrates and ferrous
iron as a cofactor.
Length = 165
Score = 90.5 bits (225), Expect = 4e-21
Identities = 34/179 (18%), Positives = 54/179 (30%), Gaps = 29/179 (16%)
Query: 568 TEKFCHEFVQIMEAYGQWSDGTNNDKRLETGYEAVPTRDIHMKQVGLAGVW-----AEFL 622
+ C + ++ E G W P +Q G W + +
Sbjct: 1 SPAECQKLLEEAEPLG-WRGEVTRGIG-------NPNETSQYRQSN--GTWLELLERDLV 50
Query: 623 RKYVVPLQEREFIGYHHEPVRAPMSFVVRYRPDEQPSLRPHHD-----SSTYTINIALNQ 677
+ + P+ A + V RY P PH D T + LN
Sbjct: 51 IERIRQRLADFLGLLAGLPLSAEDAQVARYGPG--GHYGPHVDNFLYGDRIATFILYLND 108
Query: 678 VGVDYEGGGCRF---IRYNCNVTATRMGWMLMHP-GRLTHYHEGLQVTQGTRYIMISFV 732
V EGG F + G +L P G H VT+G+R+ + ++
Sbjct: 109 V---EEGGELVFPGLRLMVVATVKPKKGDLLFFPSGHGRSLHGVCPVTRGSRWAITGWI 164
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily. This
family contains members of the 2-oxoglutarate (2OG) and
Fe(II)-dependent oxygenase superfamily. This family
includes the C-terminal of prolyl 4-hydroxylase alpha
subunit. The holoenzyme has the activity EC:1.14.11.2
catalyzing the reaction: Procollagen L-proline +
2-oxoglutarate + O2 <=> procollagen trans-
4-hydroxy-L-proline + succinate + CO2. The full enzyme
consists of a alpha2 beta2 complex with the alpha
subunit contributing most of the parts of the active
site. The family also includes lysyl hydrolases,
isopenicillin synthases and AlkB.
Length = 96
Score = 56.7 bits (137), Expect = 4e-10
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 648 FVVRYRPDEQPSLRPHHDSSTYTINIALNQVGVDYEGGGCRFIRYNCNVTATRM-GWMLM 706
V Y PD L PH D S TI + GGG +F++ + G +++
Sbjct: 6 LVNYYPPDLGLGLGPHTDDSIITILLQDG-------GGGLQFLKDGGWIDVPPGPGALVV 58
Query: 707 HPGRL----------THYHEGLQVTQGTRYIMISFVDP 734
+ G L + H L T G R + F+ P
Sbjct: 59 NFGDLLLVLSNGRYKSVLHRVLPNTGGERISIAFFLRP 96
>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase,
exosortase G-associated. Members of this protein family
are probable glycosyltransferases of family 2, whose
genes are near those for the exosortase homolog XrtG
(TIGR03110), which is restricted to Gram-positive
bacteria. Other genes in the conserved gene neighborhood
include a 6-pyruvoyl tetrahydropterin synthase homolog
(TIGR03112) and an uncharacterized intergral membrane
protein (TIGR03766).
Length = 439
Score = 38.6 bits (90), Expect = 0.012
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 281 HLDSLKP-DQFPSVLISVFIDKPTAFLEEFLNKIANLNYPAKKISMFVYNNQEYHAPLFD 339
H LK + P + I + + L + I N YP + I + + NNQ F
Sbjct: 38 HKKRLKFIGKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDS-FQ 96
Query: 340 DYIHNFKTMFKNVKYIAHNSTVNSKEARNLAVENSLHKGVDFYFYVDSDSHLDNPDVLKY 399
+ + F + NS +A N A+ NS+ K + ++DSD L D +K
Sbjct: 97 VFCR-AQNEFPGLSLRYMNSDQGKAKALNAAIYNSIGK---YIIHIDSDGKLH-KDAIKN 151
Query: 400 LVNRNE 405
+V R E
Sbjct: 152 MVTRFE 157
>gnl|CDD|133017 cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl
transferase. Shigella flexneri RfbF protein is a
putative dTDP-rhamnosyl transferase. dTDP rhamnosyl
transferases of Shigella flexneri add rhamnose sugars
to N-acetyl-glucosamine in the O-antigen tetrasaccharide
repeat. Lipopolysaccharide O antigens are important
virulence determinants for many bacteria. The variations
of sugar composition, the sequence of the sugars and the
linkages in the O antigen provide structural diversity
of the O antigen.
Length = 237
Score = 35.3 bits (82), Expect = 0.071
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 16/114 (14%)
Query: 306 LEEFLNKIANLNYPAKKISMFVYNNQEY-HAPLFDDYIHNFKTMFKNVKYIAHNSTVNSK 364
L + +A L K+ V +N L ++ I +
Sbjct: 10 LSKLKELLAALAEQVDKV--VVVDNSSGNDIELRLRLNSE------KIELIHLGENLGIA 61
Query: 365 EARNLAVENSLHKGVDFYFYVDSDSHLDNPDVLKYL-------VNRNESLIAPL 411
+A N+ ++ +L G D+ D DS V K L N N + P
Sbjct: 62 KALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPR 115
>gnl|CDD|218622 pfam05521, Phage_H_T_join, Phage head-tail joining protein.
Length = 96
Score = 32.7 bits (75), Expect = 0.15
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 617 VWAEFLRKYVVPLQEREFIGYHHEPVRAPMSFVVRYRPDEQPSLRPHHDSSTYTI 671
VWA V PL REFI + +RYRPD +R Y I
Sbjct: 30 VWAA-----VEPLSGREFIAAGAAQAEVTVRITIRYRPDITADMRIRFGGRIYDI 79
>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function
prediction only].
Length = 305
Score = 32.1 bits (73), Expect = 0.96
Identities = 40/248 (16%), Positives = 71/248 (28%), Gaps = 22/248 (8%)
Query: 302 PTAFLEEFLNKIANLNYPAKKISMFVYNNQEYHAPLFDDYIHNFKTMFKNVKYIAHNSTV 361
L E L +A YP I V +N + F F NV+ I + +
Sbjct: 14 RGEDLVECLASLAAQTYPDDVI--VVVDNGSTDG-SLEALKARF---FPNVRLIENGENL 67
Query: 362 NSKEARNLAVENSLHKGVDFYFYVDSDSHLDNPDVL----KYLVNRNESLIAPLLVRPF- 416
N ++ +L KG D+ ++ D+ ++ PD+L K + + L+R +
Sbjct: 68 GFAGGFNRGIKYALAKGDDYVLLLNPDTVVE-PDLLEELLKAAEEDPAAGVVGPLIRNYD 126
Query: 417 -KAWSNFWGALNADGFYARSFDYMNIINGDQGGKGIWNVPYITNCYLMKTSVIKATNI-- 473
+ + G + + I D C L++ +
Sbjct: 127 ESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFD 186
Query: 474 --KTIYTLNSMDYDMAFCTNLRNKGIHLKIDSTQEYGHLVDSENFDPQKTNPEVYELIRN 531
IY D+ C R G + H + S +
Sbjct: 187 ERFFIYYE-----DVDLCLRARKAGYKIYYVPDAIIYHKIGSSKGSSILGTFYYHLRRNR 241
Query: 532 PLDWDLRY 539
L
Sbjct: 242 IYFAKLNE 249
>gnl|CDD|202399 pfam02793, HRM, Hormone receptor domain. This extracellular domain
contains four conserved cysteines that probably for
disulphide bridges. The domain is found in a variety of
hormone receptors. It may be a ligand binding domain.
Length = 63
Score = 29.2 bits (66), Expect = 0.99
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 10/45 (22%)
Query: 550 PDTVNNQPCPDVFWFPIVTE---KFCHEFVQIMEAYGQWSDGTNN 591
T PCPD F+ T + C E G WS+ N
Sbjct: 19 AGTTVEVPCPDYFYDFDPTGNASRNCTEN-------GTWSEHPPN 56
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 31.8 bits (72), Expect = 1.5
Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 19/186 (10%)
Query: 295 ISVFI---DKPTAFLEEFLNKIANLNYPAKKISMFVYNNQEYHAPLFDDYIHNFKTMFKN 351
+SV I ++ LEE L + + +YP ++ + + + + ++ + F+
Sbjct: 56 VSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRV 115
Query: 352 VKYIAHNSTVNSKEARNLAVENSLHKGVDFYFYVDSDSHLDNPDVLKYLVNR--NESLIA 409
+ N +A L KG D +D+D + PD L+ LV+ + + A
Sbjct: 116 IYP----EKKNGGKAGALNNGLKRAKG-DVVVILDAD-TVPEPDALRELVSPFEDPPVGA 169
Query: 410 ---PLLVRPFKAWSNFWGALNADGFYARSFDYMNIINGDQGGKGIWNVPYITNCYLMKTS 466
+R SN G + A Y +F + KG + + S
Sbjct: 170 VVGTPRIRNRPDPSNLLGRIQA-IEYLSAFYFRLR----AASKGGLISFLSGSSSAFRRS 224
Query: 467 VIKATN 472
++
Sbjct: 225 ALEEVG 230
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 31.1 bits (70), Expect = 2.2
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 174 ISNRSIKNEEDDQLYYALLFLDETLRTKHKIVLDTL 209
+S RSIK+ D Q L L E LR KH +++DT+
Sbjct: 249 VSVRSIKDIADLQ-----LMLHE-LRGKHMVLIDTV 278
>gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease. This domain is
responsible for the 3'-5' exonuclease proofreading
activity of E. coli DNA polymerase I (polI) and other
enzymes, it catalyzes the hydrolysis of unpaired or
mismatched nucleotides. This domain consists of the
amino-terminal half of the Klenow fragment in E. coli
polI it is also found in the Werner syndrome helicase
(WRN), focus forming activity 1 protein (FFA-1) and
ribonuclease D (RNase D). Werner syndrome is a human
genetic disorder causing premature aging; the WRN
protein has helicase activity in the 3'-5' direction.
The FFA-1 protein is required for formation of a
replication foci and also has helicase activity; it is a
homologue of the WRN protein. RNase D is a 3'-5'
exonuclease involved in tRNA processing. Also found in
this family is the autoantigen PM/Scl thought to be
involved in polymyositis-scleroderma overlap syndrome.
Length = 172
Score = 29.9 bits (68), Expect = 3.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 163 FIGYAKDIKELISNRSIKNEEDDQLYYALLFLDETLRTKHKI 204
++G D E ++ + ++QL YA D LR K+
Sbjct: 126 YLGVELDKSEQCADWRARPLSEEQLRYAAEDADYLLRLYDKL 167
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 30.6 bits (70), Expect = 3.4
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
Query: 478 TLNSM------DYDMAFCTNLRNKGIHLK-------IDSTQEYGHLVDSENFD------P 518
T NS+ D+ + F + +HL + STQE+G + + + P
Sbjct: 200 TENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEFGFVELPDAYSTGSSIMP 259
Query: 519 QKTNPEVYELIR 530
QK NP+V ELIR
Sbjct: 260 QKKNPDVLELIR 271
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit
in epithelial cell-specific clathrin-associated adaptor
protein (AP) complex AP-1. AP complexes participate in
the formation of intracellular coated transport vesicles
and select cargo molecules for incorporation into the
coated vesicles in the late secretory and endocytic
pathways. There are four AP complexes, AP-1, AP-2, AP-3,
and AP-4, described in various eukaryotic organisms.
Each AP complex consists of four subunits: two large
chains (one each of gamma/alpha/delta/epsilon and
beta1-4, respectively), a medium mu chain (mu1-4), and a
small sigma chain (sigma1-4). Each of the four subunits
from different AP complexes exhibits similarity with
each other. This subfamily corresponds to the C-terminal
domain of heterotetrameric clathrin-associated adaptor
protein complex 1 (AP-1) medium mu1B subunit encoded by
ap1m2 gene exclusively expressed in polarized epithelial
cells. Epithelial cell-specific AP-1 is used to sort
proteins to the basolateral plasma membrane, which
involves the formation of clathrin-coated vesicles
(CCVs) from the trans-Golgi network (TGN). Recruitment
of AP-1 to the TGN membrane is regulated by a small
GTPase, ADP-ribosylation factor 1 (ARF1). The
phosphorylation/dephosphorylation events can also
regulate the function of AP-1. The membrane-anchored
cargo molecules can be linked to the outer lattice of
CCVs by AP-1. Those cargo molecules interact with
adaptors through short sorting signals in their
cytosolic segments. Tyrosine-based endocytotic signals
are one of the most important sorting signals. They are
of the form Y-X-X-Phi, where Y is tyrosine, X is any
amino acid and Phi is a bulky hydrophobic residue that
can be Leu, Ile, Met, Phe, or Val. These kinds of
sorting signals can be recognized by the C-terminal
domain of AP-1 mu1B subunit, also known as Y-X-X-Phi
signal-binding domain that contains two hydrophobic
pockets, one for the tyrosine-binding and one for the
bulky hydrophobic reside-binding. Besides, AP-1 mu1B
subunit mediates the basolateral recycling of
low-density lipoprotein receptor (LDLR) and transferrin
receptor (TfR) from the sorting endosomes, where the
basolateral sorting signal does not belong to the
tyrosine-based signals. Thus, the binding site in mu1B
subunit of AP-1 for the signals of LDLR and TfR might be
distinct from that for YXXPhi signals.
Length = 264
Score = 30.0 bits (67), Expect = 3.6
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 534 DWDLRYIHPEYQKSLLPDTVNNQPCPDVFWFPIVTEKFCHEFVQIM-EAYGQW 585
D + +I P+ + L+ +N Q P + W V EKF H V+IM +A GQ+
Sbjct: 97 DRTISFIPPDGESELMSYRLNTQVKP-LIWIESVIEKFSHSRVEIMVKAKGQF 148
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning with
galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 29.9 bits (68), Expect = 4.4
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 304 AFLEEFLNKIANLNYPAKKISMFVYNNQEYHAPLFD---DYIHNFKTMFKNVKYIAHNST 360
++EE L + N +YP I + V + D + + + ++ I N
Sbjct: 13 KYIEELLESLLNQSYPKDLIEIIVVD-----GGSTDGTREIVQEYAAKDPRIRLI-DNPK 66
Query: 361 VNSKEARNLAVENSLHKGVDFYFYVDSDSHLDN 393
N+ + NS D VD+ +
Sbjct: 67 RIQSAGLNIGIRNSRG---DIIIRVDAHAVYPK 96
>gnl|CDD|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein;
Provisional.
Length = 421
Score = 30.2 bits (68), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 339 DDYIHNFKTMFKNVKYIAHNSTV---NSKEARNLAVENSLH 376
DD IH F T+ +N+ +I H S + K A L ++ L+
Sbjct: 191 DDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLY 231
>gnl|CDD|220754 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid
dehydrogenase kinase. Catabolism and synthesis of
leucine, isoleucine and valine are finely balanced,
allowing the body to make the most of dietary input but
removing excesses to prevent toxic build-up of their
corresponding keto-acids. This is the butyryl-CoA
dehydrogenase, subunit A domain 3, a largely
alpha-helical bundle of the enzyme BCDHK. This enzyme is
the regulator of the dehydrogenase complex that breaks
branched-chain amino-acids down, by phosphorylating and
thereby inactivating it when synthesis is required. The
domain is associated with family HATPase_c pfam02518
which is towards the C-terminal.
Length = 163
Score = 29.1 bits (66), Expect = 5.1
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 166 YAKDIKELISNRSIKNEEDDQLYYALLFLDETLRTKHKIVLDTLANLFQ---NLYGSLED 222
Y + +EL S K ED++ + LL + +H V+ TLA +L + +
Sbjct: 62 YLQSFEELRSFPPPKTLEDNEKFCDLL---RDILDRHNNVVPTLAQGVLELKDLLDPVPE 118
Query: 223 IKLNFDLDEF 232
++ + LD F
Sbjct: 119 DEIQYFLDRF 128
>gnl|CDD|235877 PRK06850, PRK06850, hypothetical protein; Provisional.
Length = 507
Score = 29.9 bits (68), Expect = 5.5
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 183 EDDQLYYALL--FLDETLRTKHKI----VLDTLANLFQNLYGSLEDIKLNF----DLDEF 232
++D L+ L+ LD + + + D L + + + SLE+I N L +
Sbjct: 424 QEDGLHLELVRKLLDLERQYRGLSRRSGIYDKLEKILKQDWRSLEEIAQNAALLRKLKDA 483
Query: 233 VH 234
+H
Sbjct: 484 IH 485
>gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase.
Length = 332
Score = 29.7 bits (67), Expect = 6.1
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 26/73 (35%)
Query: 295 ISVFIDKPTAFLEEFLNKIANLNYPAKKISMFVYNNQ----EYHAPLFDDYIHNFKTMFK 350
IS +D ++FL+K Y K NN E H P++D+ +
Sbjct: 8 ISAVVD------QDFLDK-----YDVK------LNNAILAEEKHLPMYDELASKY----- 45
Query: 351 NVKYIAHNSTVNS 363
NV+YIA +T NS
Sbjct: 46 NVEYIAGGATQNS 58
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 29.6 bits (67), Expect = 6.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 503 STQEYGHLVDSENFD------PQKTNPEVYELIR 530
ST E+G + + F PQK NP+V ELIR
Sbjct: 258 STGEFGFVELPDEFSSGSSIMPQKKNPDVAELIR 291
>gnl|CDD|113093 pfam04310, MukB, MukB N-terminal. This family represents the
N-terminal region of MukB, one of a group of bacterial
proteins essential for the movement of nucleoids from
mid-cell towards the cell quarters (i.e. chromosome
partitioning). The structure of the N-terminal domain
consists of an antiparallel six-stranded beta sheet
surrounded by one helix on one side and by five helices
on the other side. It contains an exposed Walker A loop
in an unexpected helix-loop-helix motif (in other
proteins, Walker A motifs generally adopt a P loop
conformation as part of a strand-loop-helix motif
embedded in a conserved topology of alternating helices
and (parallel) beta strands).
Length = 227
Score = 28.8 bits (64), Expect = 8.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 426 LNADGFYARSFDYMNIINGDQGGKG 450
+N +GF+AR+FD ++ GG G
Sbjct: 13 INWNGFFARTFDIDELVTTLSGGNG 37
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP21-like proteins. ArhGAP21 is a multi-domain
protein, containing RhoGAP, PH and PDZ domains, and is
believed to play a role in the organization of the
cell-cell junction complex. It has been shown to
function as a GAP of Cdc42 and RhoA, and to interact
with alpha-catenin and Arf6. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 196
Score = 28.9 bits (65), Expect = 8.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 337 LFDDYIHNFKTMFKNVKYIAHNSTVNSKEARNLAV 371
L D + K + +++K +A NS VN E RNLA+
Sbjct: 123 LPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAI 157
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 28.9 bits (65), Expect = 9.4
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 292 SVLISVFIDKPTAFLEE-FLNKIANLNY--PAKKISMFVYNNQEYHAPLFDDYIHNFKTM 348
SV+I V++ T + + + + L+Y + + V + + F +
Sbjct: 1 SVIIPVYLSLRTRDILKRLQSCLNRLSYFLSDPDVEIIVVDGDSPLS--FAKELKKIIAK 58
Query: 349 FKNVKYIAHNS---TVNSKEARNLAVENSLHKGVDFYFYVDSDSHLDNPDVLKYLVNRNE 405
+ YI+H + + +ARN E S DF F++D D + PD L+ ++ +
Sbjct: 59 NGAINYISHKTHKDLFSPAKARNRGAEYS---SSDFIFFLDVDCLIS-PDTLEKIIKHFQ 114
Query: 406 SL 407
L
Sbjct: 115 EL 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.428
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,121,037
Number of extensions: 3805689
Number of successful extensions: 3230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3221
Number of HSP's successfully gapped: 44
Length of query: 734
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 630
Effective length of database: 6,324,786
Effective search space: 3984615180
Effective search space used: 3984615180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)