RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14856
(734 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 5e-11
Identities = 69/457 (15%), Positives = 141/457 (30%), Gaps = 144/457 (31%)
Query: 34 FLVITVASNETDGYKRFIQSAE-------VNKLQVKTLGLHQPWLGGDM-----SSLGGG 81
L T+ S + + ++F++ ++ ++ + QP + M L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR---QPSMMTRMYIEQRDRLYND 122
Query: 82 ------YKVN------LLKNELDEMDITDDMII----------LVTD---SYDVI--IDG 114
Y V+ L+ L E+ +++I + D SY V +D
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 115 GV-----------NDILERFNTFDANIVFGAERLCWPDTSLYDKYPAVGSGYRYLNSGGF 163
+ +LE L + + S +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQK-----------LLYQIDPNWTSRSDHSSNIKLR----- 226
Query: 164 IGYAKD-IKELISNRSIKNEEDDQLYYALLFLD-----ETLR-----------TKHKIVL 206
I + ++ L+ ++ +N LL L + T+ K V
Sbjct: 227 IHSIQAELRRLLKSKPYEN--------CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 207 DTLANLFQNLYGSLEDIKLNFDLDE----FVHLTNTKYN--------TNPVIIHGNGKSK 254
D L+ SL+ + DE + + + TNP + +S
Sbjct: 279 DFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 255 IELNSFGNYLAKSWKTSGCTRCN-LIKH-LDSLKPDQ----------FP-------SVLI 295
+ + + WK C + +I+ L+ L+P + FP +L
Sbjct: 338 RDGLATWDN----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 296 SVFIDKPTAFLEEFLNKIANLNYPAKKISMFVYNNQEYHAPLFDDYIHNFKTMFKNVKYI 355
++ D + + +NK+ S+ +E + Y+ K +N +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKY-------SLVEKQPKESTISIPSIYLE-LKVKLENEYAL 445
Query: 356 AHNSTVNS-KEARNLAVENSLHKGVDFYFYVDSDSHL 391
H S V+ + ++ + +D YFY SH+
Sbjct: 446 -HRSIVDHYNIPKTFDSDDLIPPYLDQYFY----SHI 477
Score = 56.0 bits (134), Expect = 3e-08
Identities = 80/563 (14%), Positives = 159/563 (28%), Gaps = 145/563 (25%)
Query: 279 IKH-LDSLKPDQFPSVLISVFIDKPTAFLEEFLNKIANLNY-------------PAKKIS 324
I H + S L + K +++F+ ++ +NY P+
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 325 MFVYNNQEYH--APLFDDY-------IHNFKTMFKNVK---YIA-H------NSTVNSKE 365
M++ + +F Y + ++ + + V
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 366 ARNLAVENSLHKGVDFYFYVDSDSHLDNPDVLKYLVNRNESLIAPLLVRPFKAWSNFWGA 425
+ V+ + + F+++ + VL+ L + R + +
Sbjct: 171 CLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 426 LNADGFYARSF---DYMN--IINGDQGGKGIWNVPYIT----NC-YLMKT---SVIKATN 472
+ R Y N ++ + + N +C L+ T V +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLN-----VQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 473 IKTIYTLNSMDYDMAFCTNLRNKGIHLKIDSTQEYGHLVDSENFD-P---QKTNPEVY-- 526
T ++ + M T K + LK +D D P TNP
Sbjct: 283 AATTTHISLDHHSMTL-TPDEVKSLLLKY---------LDCRPQDLPREVLTTNPRRLSI 332
Query: 527 --ELIRNPLD-WD-----------------LRYIHP-EYQK-----SLLPDTVNNQPCP- 559
E IR+ L WD L + P EY+K S+ P + + P
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---IPT 389
Query: 560 ---DVFWF---PIVTEKFCHEFVQIMEAYGQWSDGTN--NDKRLETGYEAVPTRDIHMKQ 611
+ WF ++ + Q + T LE + +H
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 612 VGLAGVWAEFLRKYVVPLQER----EFIGYHHEPVRAPMSFVVRYRPDEQPSLRPH---- 663
V + F ++P IG+H + E+ +L
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-------LK---NIEHPERMTLFRMVFLD 499
Query: 664 ---------HDSSTYTINIALNQVGVD---YEGGGCRFIRYNCNVTATRMGWMLMHPGRL 711
HDS+ + + ++ Y+ +I N R+ ++ L
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK----PYICDNDP-KYERLVNAILD--FL 552
Query: 712 THYHEGLQVTQGTRYIMISFVDP 734
E L ++ T + I+ +
Sbjct: 553 PKIEENLICSKYTDLLRIALMAE 575
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 5e-05
Identities = 70/462 (15%), Positives = 139/462 (30%), Gaps = 145/462 (31%)
Query: 156 RYLNSGGFIGYAKDIKELISNRSIKNEEDDQL---------YY-ALLFLDETLRTKHKIV 205
YL DI L + + E D L Y A + K
Sbjct: 94 CYLEG-------NDIHALAA--KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 206 L-----DTLANLF-----QNLYGSLEDIKLNFDLDEFVHLTNTKYNT-NPVI---IHGNG 251
L + A L Q G+ +D +E L Y T + ++ I +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQ---GNTDDY-----FEELRDL----YQTYHVLVGDLIKFSA 192
Query: 252 KSKIELNSFGNYLAKSWKTSGCTRCNLIKHLDSLKPDQFPSV--LISVFIDKPTAFLEEF 309
++ EL A+ T G N+++ L+ P P L+S+ I P + +
Sbjct: 193 ETLSEL-IRTTLDAEKVFTQGL---NILEWLE--NPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 310 LNKIANLNYPAKKISMFVYNNQEYHAPLFDDYIHNFKTMFKNV---KYIAHNSTVNSKEA 366
+ Y + + Y+ + + IA + S
Sbjct: 247 AH------Y------VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES--- 291
Query: 367 RNLAVENSLHKGVDFYFYVDSDSHLD------NPDVLKYLVNRNESLIAPLL-VR--PFK 417
+ K + F++ + P +L+ + NE + +P+L + +
Sbjct: 292 ---FFVSVR-KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 418 AWSNFWGALNADGFYARSFDYMNIINGDQ-----G-------------------GKGIWN 453
++ N+ + ++++NG + G G
Sbjct: 348 QVQDYVNKTNSHLPAGKQV-EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 454 VPY------ITNCYL----------MK--TSVIKATNIKTIYTLNSMDYDMA-FCTNLRN 494
+P+ +N +L + + +I +K + N+ D + + T
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT---F 463
Query: 495 KGIHLKIDSTQEYGHLVDSENFDPQKTNPEVYELIRNPLDWD 536
G L++ S +VD +IR P+ W+
Sbjct: 464 DGSDLRVLSGSISERIVD--------------CIIRLPVKWE 491
Score = 40.0 bits (93), Expect = 0.003
Identities = 42/278 (15%), Positives = 73/278 (26%), Gaps = 100/278 (35%)
Query: 449 KGIWNV--PYITNCYLMKTSVIKATNIKTIYTLNSMDYDMAFCTNLRNKGIHLKIDSTQE 506
+ +WN + + Y I N + + K I +
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF---------GGEKGKRIR------EN 1687
Query: 507 YGHLVDSENFDPQKTNPEVYELIRNPLDWDLRYIHPEYQKSLLPDTVNNQPCPDVFWFPI 566
Y ++ D + ++++ I N + + LL T QP +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEI-NEHSTSYTFRSEK---GLLSATQFTQPA-------L 1736
Query: 567 VTEKFCHEF--VQIMEAYGQWSDGTNNDKRL------ETGYEAVPTRDIHMKQVGLAGVW 618
E + +++ G D E Y A+ LA V
Sbjct: 1737 TL----MEKAAFEDLKSKG----LIPADATFAGHSLGE--YAAL---------ASLADV- 1776
Query: 619 AEFLRKYVVPLQEREFIGYHHEPVRAPMSF-----VVRYR----PDEQPSLRPHHDSSTY 669
MS VV YR P R S Y
Sbjct: 1777 ---------------------------MSIESLVEVVFYRGMTMQVAVP--RDELGRSNY 1807
Query: 670 TINIALN--QVGVDYEGGGCRFIRYNCNVTATRMGWML 705
+ IA+N +V + +++ R GW++
Sbjct: 1808 GM-IAINPGRVAASFSQEALQYV---VERVGKRTGWLV 1841
Score = 37.3 bits (86), Expect = 0.022
Identities = 70/510 (13%), Positives = 128/510 (25%), Gaps = 205/510 (40%)
Query: 215 NLYGSLEDIKLNFDLDEFVHLTNTKYNTNPVIIHGNGKSKIEL-NSFGNYLAKSWKTSGC 273
+ ++ ++F + T + EL F Y++
Sbjct: 25 ASFFIASQLQ-----EQFNKILPE--PTEGFAADDEPTTPAELVGKFLGYVSSL------ 71
Query: 274 TRCNLIKHLDSLKPDQFPSVLISVFIDKPTAFLEEFL--NKI----ANL----------- 316
++ K QF VL T F +L N I A L
Sbjct: 72 --------VEPSKVGQFDQVLNLCL----TEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 317 -----NY---------PAKKIS---MF---------VY-------NNQEY---------- 333
NY P K S +F + N +Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 334 HAPLFDDYIHNFKTMFKNVKYIAHNSTVNSKEARNLAVENSLHK-----GVDF------- 381
+ L D I + I + L + L D+
Sbjct: 180 YHVLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 382 ----------YFYVDSDSHLDNP----DVLKYLVNRNESLIAPLLVRPFKAWSNFWGALN 427
++ V + P LK ++ L+ + + +W +F+ +
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV--S 295
Query: 428 ADG-----FY--ARS---FDYMNI---INGD--QGGKG-------IWNVP------YI-- 457
F+ R + ++ I D + +G I N+ Y+
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 458 TNCYLMKTSVIKATNIKTIYTLNSMD-----------YDMAFCTNLRNKGIHLKIDSTQ- 505
TN +L ++ + + N Y LR +D ++
Sbjct: 356 TNSHLPAGKQVEISLV------NGAKNLVVSGPPQSLY--GLNLTLRKAKAPSGLDQSRI 407
Query: 506 EYG--HLVDSENFDP----------QKTNPEVYE-LIRNPLDW----------------D 536
+ L S F P + + + L++N + + D
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 537 LRYIHPEYQKSLLPDTVN---NQPCPDVFW 563
LR S+ V+ P V W
Sbjct: 468 LR----VLSGSISERIVDCIIRLP---VKW 490
Score = 31.9 bits (72), Expect = 0.93
Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 80/196 (40%)
Query: 271 SGCTRCNLIKHLD--------------SLK--PDQF-----PSVLISV------------ 297
S T+ + +++ SL P L +
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 298 -------FIDKPTAFLEEFLNKIANLNYPAKKISMFVYNNQEYHAPLFDDYIHNFKT--M 348
F ++ F FL + P +H+ L +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVAS----P-------------FHSHLLVPASDLINKDLV 444
Query: 349 FKNVKYIAHN------STVNSKEARNLAVENSLHKGVD--FYFYVD-------SDSH-LD 392
NV + A + T + + R L+ + + VD V +H LD
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLS-GSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 393 -NPDV---LKYLVNRN 404
P L L +RN
Sbjct: 504 FGPGGASGLGVLTHRN 519
Score = 29.6 bits (66), Expect = 4.7
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 35/120 (29%)
Query: 144 LYDKYPAV------GSGYRYLNSGGFIGYAKDIKELISNRSIKNEEDDQLYYALLFLDET 197
LY A + + ++ GF I +++ N + + F E
Sbjct: 1635 LYKTSKAAQDVWNRADNH-FKDTYGF-----SILDIVINNPVN--------LTIHFGGEK 1680
Query: 198 LRTKHKIVLDTLANLFQNLY-GSLEDIKLNFDLDE------FVH----LTNTKYNTNPVI 246
+ +I + A +F+ + G L+ K+ +++E F L+ T+ T P +
Sbjct: 1681 GK---RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-FTQPAL 1736
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel,
virus; NMR {Bacillus phage SPP1}
Length = 109
Score = 37.6 bits (87), Expect = 0.002
Identities = 7/58 (12%), Positives = 13/58 (22%), Gaps = 5/58 (8%)
Query: 614 LAGVWAEFLRKYVVPLQEREFIGYHHEPVRAPMSFVVRYRPDEQPSLRPHHDSSTYTI 671
A V P+ + E+ + Y +R + T
Sbjct: 31 EFTAAAH-----VQPISQEEYYKAQQLQTPIGYNIYTPYDDRIDKKMRVIYRGKIVTF 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.004
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 279 IKHLD-SLK---PDQFPSVLISVFID 300
+K L SLK D P++ I ++
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 1.3
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 652 YRPDEQPSL 660
Y D P+L
Sbjct: 32 YADDSAPAL 40
>2kz4_A Putative head-tail adaptor; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG; NMR {Shigella flexneri}
Length = 112
Score = 35.4 bits (81), Expect = 0.012
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 612 VGLAGVWAEFLRKYVVPLQEREFIGYHHEPVRAPMSFVVRYRPDEQPSLRPHHDSSTYTI 671
+WA V + +E I E + +RYR D + R +
Sbjct: 30 EDGHTLWAS-----VNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVSTGPLAG 84
Query: 672 NIALNQVGVDYEGGGCRFIRYNC 694
+ LN +G + C
Sbjct: 85 RV-LNIIGQPLPDAARTRLEILC 106
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded
beta helix, alpha-keto dependent non-heme iron
oxygenase; 1.40A {Bacillus anthracis str}
Length = 216
Score = 34.7 bits (80), Expect = 0.056
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 24/98 (24%)
Query: 649 VVRYRPDEQPSLRPHHDSST-----------YTINIALNQVGVDYEGGGCRFIRYNCNVT 697
++ Y D+Q + H+D T+ + LN V EGG F + N +V
Sbjct: 115 ILNYEVDQQ--YKAHYDYFAEHSRSAANNRISTLVMYLNDV---EEGGETFFPKLNLSVH 169
Query: 698 ATRMG----WMLMHPGRLTHY---HEGLQVTQGTRYIM 728
R G + + + + H G VT+G ++I
Sbjct: 170 P-RKGMAVYFEYFYQDQSLNELTLHGGAPVTKGEKWIA 206
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 33.7 bits (78), Expect = 0.24
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
Query: 478 TLNSM------DYDMAFCTNLRNKGIHLK-------IDSTQEYGHLVDSENFD------P 518
+LNSM D+ + F + IHL I ST E+G L S+ F P
Sbjct: 228 SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMP 287
Query: 519 QKTNPEVYELIR 530
QK NP+ ELIR
Sbjct: 288 QKKNPDSLELIR 299
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 33.7 bits (78), Expect = 0.24
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 19/72 (26%)
Query: 478 TLNSM------DYDMAFCTNLRNKGIHLK-------IDSTQEYGHLVDSENFD------P 518
T NS+ D+ + + +HL +T E G + S+ P
Sbjct: 222 TRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMP 281
Query: 519 QKTNPEVYELIR 530
QK NP+ ELIR
Sbjct: 282 QKKNPDALELIR 293
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 33.3 bits (77), Expect = 0.32
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 478 TLNSM------DYDMAFCTNLRNKGIHLK-------IDSTQEYGHLVDSENFD------P 518
NS+ D+ + + L +HL + ST+E+G + + F P
Sbjct: 225 MRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMP 284
Query: 519 QKTNPEVYELIR 530
QK NP++ ELIR
Sbjct: 285 QKKNPDILELIR 296
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural
genomics, JOI for structural genomics, JCSG; 2.26A
{Shewanella baltica OS155}
Length = 243
Score = 31.8 bits (72), Expect = 0.55
Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 43/193 (22%)
Query: 559 PDVFWFPIVTEKFCHEFVQIMEAYGQWSDGT-----------NNDKRLETGYEAVPTRDI 607
P+VF +++ + ++A +W DG N + + AV
Sbjct: 25 PNVF-----SKQEVSHLREQLDA-RRWIDGNQTSGAMATTRKRNQQLDKDDPVAVALGQQ 78
Query: 608 HMKQVGLAGVWAEF-LRKYVVPLQ-----EREFIGYH-HEPVRAPMSFVVRYRPDEQPSL 660
M ++ + L P E GYH +R+ ++R
Sbjct: 79 IMDRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDGMIRTDL------ 132
Query: 661 RPHHDSSTYTINIALNQVGVDYEGGGCRFIRYNCNVTATR-MGWMLMHPGRLTHYHEGLQ 719
+ T+ ++ + +Y+GG + G ++++P H+
Sbjct: 133 -------SATLFLSEPE---NYQGGELVIQDTYGQQSIKLSAGSLVLYPSSS--LHQVTP 180
Query: 720 VTQGTRYIMISFV 732
V G R ++
Sbjct: 181 VLSGERTAAFMWL 193
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein,
micelles, serine P domain swapping, hydrolase; NMR
{Escherichia coli}
Length = 69
Score = 28.2 bits (63), Expect = 1.6
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 487 AFCTNLRNKGIHLKIDSTQEYGHLVDSENFDPQKTNPEVYELIRNPLDWDLRYIHPEYQK 546
AF + +G+ L I + + E+ ++ E+ + NP ++
Sbjct: 15 AFVDYMATQGVILTIQQHNQSDVWLADES-QAERVRAELARFLENPA-------DLDHHH 66
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A
{Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A*
1ss9_A*
Length = 311
Score = 30.5 bits (69), Expect = 2.0
Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 20/156 (12%)
Query: 109 DVIIDGGVNDILERFNT-FDANIVFGAERLCWPDTSLYDKYPAVGSGYRYLNSGGFI--- 164
DV++ + + ++T N + + L Y + + G Y N+G +
Sbjct: 105 DVLV---RDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINL 161
Query: 165 ------GYAKDIKELISNRSIKNEEDDQLYYALLFLDETLRTKHKIVLDTLANLFQNLYG 218
K E + + DQ LF ++ N F
Sbjct: 162 KKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKGGVCY------ANSRFN-FMPTNY 214
Query: 219 SLEDIKLNFDLDEFVHLTNTKYNTNPVIIHGNGKSK 254
+ + ++ T + H G +K
Sbjct: 215 AFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAK 250
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, putative
glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus
prevotii}
Length = 276
Score = 30.2 bits (68), Expect = 2.4
Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 26/163 (15%)
Query: 102 ILVTDSYDVIIDGGVNDILERFNTFDANIVFGAERLCW-PDTSLYDKYPAVGSGYRYLNS 160
IL D D+++ +N + + T ++ + A D + +G+ Y NS
Sbjct: 104 ILYLDP-DMLV---INPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNS 159
Query: 161 GGFIGYAKDIKEL-ISNRSIKNEEDDQLYYALLFLDETLRTKHKIVLDTLANLFQNLYGS 219
G + K +E + E + LL D+ D L ++ +
Sbjct: 160 GLLLINLKRAREEIDPDEIFSFVE--DNHMNLLLPDQ----------DILNAMYGDRIYP 207
Query: 220 LEDIKLNFDLDEFVHLTNTKYN--------TNPVIIHGNGKSK 254
L+D+ N+D + + V++H G+ K
Sbjct: 208 LDDLIYNYDARNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDK 250
>1u34_A CRFR2B, corticotropin releasing factor receptor 2; beta sheets and
loops, signaling protein; NMR {Mus musculus} SCOP:
g.76.1.1 PDB: 2jnd_A* 2jnc_A
Length = 119
Score = 28.2 bits (62), Expect = 4.4
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 12/64 (18%)
Query: 550 PDTVNNQPCPDVF-WFPIVTE----KFCHEFVQIMEAYGQWSDGTNNDKRLETGYEAVPT 604
P + +PCP+ F T + C E G W+ N +
Sbjct: 62 PGALVERPCPEYFNGIKYNTTRNAYRECLE-------NGTWASRVNYSHCEPILDDKQRK 114
Query: 605 RDIH 608
D+H
Sbjct: 115 YDLH 118
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 28.5 bits (63), Expect = 5.5
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 468 IKATNIKTIYTLNSMDYDMAFCTNLRNKGIHLKID 502
+K + TI + YD + D
Sbjct: 57 LKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFD 91
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 28.8 bits (63), Expect = 8.2
Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 23/116 (19%)
Query: 266 KSWKTSG---CTRCNLIKHLDSLKPDQFPSVLISVFID--------KPTAFL--EEFLNK 312
K W + G R H D D S + FID PTAF E FL
Sbjct: 454 KEWLSFGHRFQLRVG---HGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLIT 510
Query: 313 IANLNYPAKKISMFVYNNQEYHAPLFD-------DYIHNFKTMFKNVKYIAHNSTV 361
I + Y + + Q+ YI++ F N Y ++++ V
Sbjct: 511 ILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYSNHV 566
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.428
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,673,521
Number of extensions: 722329
Number of successful extensions: 1648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1637
Number of HSP's successfully gapped: 32
Length of query: 734
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 633
Effective length of database: 3,881,772
Effective search space: 2457161676
Effective search space used: 2457161676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)