RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14856
         (734 letters)



>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate
           oxidase 1 {Petunia hybrida [TaxId: 4102]}
          Length = 307

 Score = 33.4 bits (75), Expect = 0.084
 Identities = 29/233 (12%), Positives = 62/233 (26%), Gaps = 23/233 (9%)

Query: 508 GHLVDSENFDPQKTNPEVYELIRNPLDWDLRYIHPEYQKSLLPDTVNNQ-PCPDVFWFPI 566
            H +  E  D       V ++ +      +     E   S   + V  +    D      
Sbjct: 37  NHGIPREVMD------TVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFF 90

Query: 567 VTEKFCHEFVQIMEAYGQWSDGTNNDKRLETGYEAVPTRDIHMKQVGLAGVWAEFLRKYV 626
           +         ++ +   ++ +   +  +            +        G+   +L+   
Sbjct: 91  LKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENL----GLEKGYLKNAF 146

Query: 627 VPLQEREFIGYHHEPVRAPMSFVVRYRPDEQPSLRPHHDSSTYTINIALNQVG--VDYEG 684
              +   F          P        PD    LR H D+    +    ++V      + 
Sbjct: 147 YGSKGPNFGTKVSNYPPCPK-------PDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD 199

Query: 685 GGCRFIRYNCNVTATRMGWMLMHP--GRLTH-YHEGLQVTQGTRYIMISFVDP 734
           G    +    +     +G  L     G+     H  +    G R  + SF +P
Sbjct: 200 GQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNP 252


>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 164

 Score = 28.6 bits (64), Expect = 1.5
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 166 YAKDIKELIS--NRSIKNEEDDQLYYALLFLDETLRTKHKIVLDTLANLFQNLYGSLE-D 222
           Y +   EL+   N+S ++ +    +  +L     +R +H  V+ T+A            D
Sbjct: 72  YMQSFLELLEYENKSPEDPQVLDNFLQVL---IKVRNRHNDVVPTMAQGVIEYKEKFGFD 128

Query: 223 IKLNFDLDEF 232
             ++ ++  F
Sbjct: 129 PFISTNIQYF 138


>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
           [TaxId: 562]}
          Length = 193

 Score = 27.7 bits (61), Expect = 3.9
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 92  DEMDITDDMIILVTDSYDVIIDGGVNDILERFNTFDA 128
            E  + D+ I       ++    G+     R + F A
Sbjct: 156 SEQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFKA 192


>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat
           (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
          Length = 167

 Score = 27.4 bits (61), Expect = 3.9
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 166 YAKDIKELISNRSIKNEEDDQLYYALLFLDETLRTKHKIVLDTLANLFQNLYGSLEDIKL 225
           Y + + +++     K+ ED +          T+R +H  V+ T+A        +  D  +
Sbjct: 78  YVQSLLDIME-FLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPV 136

Query: 226 NFD-----LDEF 232
           +       LD F
Sbjct: 137 SNQNIQYFLDRF 148


>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 69

 Score = 25.8 bits (57), Expect = 4.6
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 298 FIDKPTAFLEEFLNKIANLN 317
              +P  +L+E L +I   N
Sbjct: 31  ITKQPVVYLKEILKEIGVQN 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,910,520
Number of extensions: 144396
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 15
Length of query: 734
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 642
Effective length of database: 1,144,436
Effective search space: 734727912
Effective search space used: 734727912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)