RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14858
(405 letters)
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 259 bits (665), Expect = 3e-82
Identities = 105/457 (22%), Positives = 187/457 (40%), Gaps = 72/457 (15%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGG-P-------------LALCDWSSLQEKRRRIA 46
+G+ P +V+N I + L+ QGS F P +A +S + +RR A
Sbjct: 49 LGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVSGGRSMAFGHYSEHWKVQRRAA 108
Query: 47 ----RKYCSPRIISSNYQLMSKISL---I--ETPILLKAIHKRILSGNKSVKIKPLLQSA 97
R + Q S+ L + E L+ + + G + +PL A
Sbjct: 109 HSMMRNF-------FTRQPRSRQVLEGHVLSEARELVALLVRGSADG-AFLDPRPLTVVA 160
Query: 98 FSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAG 157
+N+ + R+ ++D + + ++ + +E + G VD +PWL F +
Sbjct: 161 VANVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFRE 220
Query: 158 WANEIREI--MLERIIKQHLDTVDYDDHPRDFTDALLQYF--REDEELSWDHIMFDLEDF 213
+ R + +H +++ PRD DA + + + DLE
Sbjct: 221 FEQLNRNFSNFILDKFLRHCESLRPGAAPRDMMDAFILSAEKKAAGDSHGGGARLDLE-- 278
Query: 214 IGGHAALGNLVMLI------------------LIYLMKNPHCIDKIRQEIDAVTGGLRDV 255
N+ I L+ + P +++ E+D V G R
Sbjct: 279 --------NVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLP 330
Query: 256 CMDDKYKMPYTEALVFETLRICASPIVP----HVATEDTTVAGYSVCKGTVVILNNFDLN 311
CM D+ +PY A ++E +R S VP H T +T+V GY + K TVV +N + +N
Sbjct: 331 CMGDQPNLPYVLAFLYEAMRF--SSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQWSVN 388
Query: 312 TSDLYWDEPTKFKPERFISQDGIVVK--PSHFIPFGTGKRTCIGQKLVTDFTFIVITSIL 369
L W P F P RF+ +DG++ K S + F GKR CIG++L F+ I+ +
Sbjct: 389 HDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILA 448
Query: 370 NHYDVSYPNMDELKLVPAC-VALPAETYELEFTLRKD 405
+ D + K+ + + + +++++ TLR+
Sbjct: 449 HQCDFRANPNEPAKMNFSYGLTIKPKSFKVNVTLRES 485
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 253 bits (648), Expect = 7e-80
Identities = 106/457 (23%), Positives = 199/457 (43%), Gaps = 80/457 (17%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGG-P--------------LALCDWSSLQEKRRRI 45
MGT ++V +L KE+LI +G F G P +A D + + RR+
Sbjct: 50 MGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRL 109
Query: 46 A----RKYCSPRIISSNYQLMSKISL---I--ETPILLKAIHKRILSGNKSVKIKPLLQS 96
A + L I E L + +S+ I +
Sbjct: 110 AMATFALF-----------KDGDQKLEKIICQEISTLCDMLAT---HNGQSIDISFPVFV 155
Query: 97 AFSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIA 156
A +N+ + +T + D +L + + I +++ VD +PWL F +K + K+
Sbjct: 156 AVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLK 215
Query: 157 GWANEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEE-----------LSWDH 205
++ L +I++ + + D + D L+Q + LS +H
Sbjct: 216 SHVKIRNDL-LNKILENYKEKFR-SDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNH 273
Query: 206 IMFDLED-FIGGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMP 264
I+ + D F G ++V L +L+ NP K+ +EID G R + D+ ++
Sbjct: 274 ILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLL 333
Query: 265 YTEALVFETLRICASPIVP----HVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLY 316
EA + E LR+ P+ P H A D+++ ++V KGT VI+N + + +
Sbjct: 334 LLEATIREVLRL--RPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHN----EKE 387
Query: 317 WDEPTKFKPERFISQDG--IVVKPSHFIPFGTGKRTCIGQKL----VTDFTFIVITSILN 370
W +P +F PERF++ G ++ ++PFG G R+CIG+ L + F+++ +L
Sbjct: 388 WHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQEL----FLIMAWLLQ 443
Query: 371 HYDVSYPN---MDELKLVPACVALPAETYELEFTLRK 404
+D+ P+ + L+ +P V L ++++++ +R+
Sbjct: 444 RFDLEVPDDGQLPSLEGIPKVVFLI-DSFKVKIKVRQ 479
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 251 bits (644), Expect = 3e-79
Identities = 98/436 (22%), Positives = 185/436 (42%), Gaps = 37/436 (8%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLF---------------GGPLALCDWSSLQEKRRRI 45
+G+TP +V++ + I++ L+ QG F D + RRR+
Sbjct: 56 IGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLITDGQSLTFSTDSGPVWAARRRL 115
Query: 46 A----RKY-CSPRIISSNYQLMSKISLIETPILLKAIHKRILSGN-KSVKIKPLLQSAFS 99
A + + SS+ + + E L+ + + L + + +
Sbjct: 116 AQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQE--LMAGPGHFDPYNQVVVSVA 173
Query: 100 NMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWA 159
N+ F ++ ++V+N E + G+P+DF P L + + + +
Sbjct: 174 NVIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLPNPALQRFKAFN 233
Query: 160 NEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEE-----LSWDHIMFDLED-F 213
+ + +++H D + RD T AL ++ ++ + + I+ + D F
Sbjct: 234 QRFLWFLQK-TVQEHYQDFD-KNSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIF 291
Query: 214 IGGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFET 273
G + + L+YL+ P KI++E+D V G R + D+ ++PY EA + ET
Sbjct: 292 GAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVIGRERRPRLSDRPQLPYLEAFILET 351
Query: 274 LRICA-SPI-VPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQ 331
R + P +PH T DTT+ G+ + K V +N + +N W++P++F+PERF++
Sbjct: 352 FRHSSFLPFTIPHSTTRDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTA 411
Query: 332 DGIVVK---PSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVSYPNMDELKLVPAC 388
DG + + FG GKR CIG+ L F+ + +L + S P ++ L P
Sbjct: 412 DGTAINKPLSEKMMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPPGVKVDLTPIY 471
Query: 389 -VALPAETYELEFTLR 403
+ + E R
Sbjct: 472 GLTMKHARCEHVQARR 487
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 249 bits (638), Expect = 2e-78
Identities = 103/451 (22%), Positives = 173/451 (38%), Gaps = 74/451 (16%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGG--PLALCDWSSLQEKRRRIARKYCSPRIISSN 58
+ TP +V+N ++E L+ G P+ + + S + +
Sbjct: 51 LAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQ---------ILGFGPRSQGVFLAR 101
Query: 59 Y-----QL------------MSKISL-----IETPILLKAIHKRILSGNKSVKIKPLLQS 96
Y + + K SL E L A + + LL
Sbjct: 102 YGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFAN---HSGRPFRPNGLLDK 158
Query: 97 AFSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEIN--QGHPVDFLPWLNPFFSKHMNK 154
A SN+ C RF+Y+D + ++ E E + ++ +P L + K
Sbjct: 159 AVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIPALA-GK 217
Query: 155 IAGWANEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDFI 214
+ + + E ++ +H T D PRD T+A L ++ F+ E
Sbjct: 218 VLRFQKAFLTQLDE-LLTEHRMTWDPAQPPRDLTEAFLA--EMEKAKGNPESSFNDE--- 271
Query: 215 GGHAALGNLVMLI------------------LIYLMKNPHCIDKIRQEIDAVTGGLRDVC 256
NL +++ L+ ++ +P +++QEID V G +R
Sbjct: 272 -------NLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPE 324
Query: 257 MDDKYKMPYTEALVFETLRICA-SPI-VPHVATEDTTVAGYSVCKGTVVILNNFDLNTSD 314
M D+ MPYT A++ E R P+ V H+ + D V G+ + KGT +I N + +
Sbjct: 325 MGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDE 384
Query: 315 LYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDV 374
W++P +F PE F+ G VKP F+PF G+R C+G+ L F+ TS+L H+
Sbjct: 385 AVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSF 444
Query: 375 SYP-NMDELKLVPAC-VALPAETYELEFTLR 403
S P + YEL R
Sbjct: 445 SVPTGQPRPSHHGVFAFLVSPSPYELCAVPR 475
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 248 bits (635), Expect = 5e-78
Identities = 106/432 (24%), Positives = 181/432 (41%), Gaps = 40/432 (9%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLF--------------GGPLALCDWSSLQEKRRRIA 46
+G +V+N ++++KE L+ Q +F G L + RR+A
Sbjct: 55 LGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKMGGLLNSRYGRGWVDHRRLA 114
Query: 47 ----RKYCSPRIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQSAFSNMF 102
R + + L ET AI + K L+ +A SN+
Sbjct: 115 VNSFRYF------GYGQKSFESKILEETKFFNDAIET---YKGRPFDFKQLITNAVSNIT 165
Query: 103 TQYLCSTRFDYEDKQLQTMVRNFDEIFYEIN--QGHPVDFLPWLNPFFSKHMNKIAGWAN 160
+ RF YED Q M+ F E + PW+ ++ A
Sbjct: 166 NLIIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAA 225
Query: 161 EIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFRE-----DEELSWDHIMFDLED-FI 214
+ + + +I++ P+ F DA L + S ++++F + + I
Sbjct: 226 VVYDFLSR-LIEKASVNRK-PQLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELII 283
Query: 215 GGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETL 274
G N++ ++++ P+ ++++EID + G DDK KMPYTEA++ E L
Sbjct: 284 AGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVL 343
Query: 275 RICA-SPI-VPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQD 332
R C P+ + H +ED V GYS+ KGT VI N + ++ + YW +P F PERF+
Sbjct: 344 RFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSS 403
Query: 333 GIVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVSYPNMDELKLVPAC-VAL 391
G K +PF G+R C+G+ L F+ T++L + + +P+ L P + L
Sbjct: 404 GYFAKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTL 463
Query: 392 PAETYELEFTLR 403
+ Y + R
Sbjct: 464 QPQPYLICAERR 475
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 233 bits (596), Expect = 3e-72
Identities = 77/454 (16%), Positives = 169/454 (37%), Gaps = 85/454 (18%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGG--PLALCDWSSLQEKRRRIARKYCSPRIISSN 58
+G +V+NS I+E +I + F G + ++++ I +
Sbjct: 64 LGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYK---------LVSQRCQD--ISLGD 112
Query: 59 Y----QLMSKISL----------IETPI------LLKAIHKRILSGNKSVKIKPLLQSAF 98
Y + K++ +E + + + V I+
Sbjct: 113 YSLLWKAHKKLTRSALLLGTRSSMEPWVDQLTQEFCERMRV---QAGAPVTIQKEFSLLT 169
Query: 99 SNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGW 158
++ + D V++ + + + +D +P+L F + + ++
Sbjct: 170 CSIICYLTFGNKEDTLVHAFHDCVQDLMKTW-DHWSIQILDMVPFLRFFPNPGLWRLKQA 228
Query: 159 ANEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDFIGGHA 218
+ +E+ +++H +++ RD TD +LQ + +
Sbjct: 229 IENRDHM-VEKQLRRHKESMV-AGQWRDMTDYMLQ-GVGRQRVEEGPGQLLEG------- 278
Query: 219 ALGNLVMLI------------------LIYLMKNPHCIDKIRQEIDAVTG---GLRDVCM 257
++ M + + +L+ +P ++++E+D G V
Sbjct: 279 ---HVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTY 335
Query: 258 DDKYKMPYTEALVFETLRICASPIVP----HVATEDTTVAGYSVCKGTVVILNNFDLNTS 313
D+ ++P A + E LR+ P+VP H T +++ GY + +G VVI N +
Sbjct: 336 KDRARLPLLNATIAEVLRL--RPVVPLALPHRTTRPSSIFGYDIPEGMVVIPNLQGAHLD 393
Query: 314 DLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYD 373
+ W++P +F+P+RF+ + FG G R C+G+ L F+V+ +L +
Sbjct: 394 ETVWEQPHEFRPDRFLEPGA----NPSALAFGCGARVCLGESLARLELFVVLARLLQAFT 449
Query: 374 VSYPN---MDELKLVPAC-VALPAETYELEFTLR 403
+ P + L+ P C V L + +++ R
Sbjct: 450 LLPPPVGALPSLQPDPYCGVNLKVQPFQVRLQPR 483
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 230 bits (588), Expect = 4e-71
Identities = 105/454 (23%), Positives = 187/454 (41%), Gaps = 84/454 (18%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGG--PLALCD--------------WSSLQEKRRR 44
+G+ +V++ ++ +KE L+ F G L W RR
Sbjct: 51 VGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFHAHRDRGIIFNNGPTWK----DIRR 106
Query: 45 IA----------RKYCSPRIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLL 94
+ ++ RI E LL+A+ K + + L+
Sbjct: 107 FSLTTLRNYGMGKQGNESRI------------QREAHFLLEALRK---TQGQPFDPTFLI 151
Query: 95 QSAFSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHP--VDFLPWLNPFFSKHM 152
A N+ L FDY D++ ++ F+E F+ ++ + P +
Sbjct: 152 GCAPCNVIADILFRKHFDYNDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYLPGSH 211
Query: 153 NKIAGWANEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFDLED 212
K+ E++E + E +K+H ++D + PRD TD LL +++ + ++ ++
Sbjct: 212 RKVIKNVAEVKEYVSE-RVKEHHQSLDPNC-PRDLTDCLLVEMEKEKHSA--ERLYTMD- 266
Query: 213 FIGGHAALGNLVMLI------------------LIYLMKNPHCIDKIRQEIDAVTGGLRD 254
+ + + L+ LMK P +K+ +EID V G R
Sbjct: 267 ---------GITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRI 317
Query: 255 VCMDDKYKMPYTEALVFETLRICA-SPI-VPHVATEDTTVAGYSVCKGTVVILNNFDLNT 312
+ D+ +MPY +A+V E R P +PH AT DT GY + KGTVV+ +
Sbjct: 318 PAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYLIPKGTVVVPTLDSVLY 377
Query: 313 SDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHY 372
+ + +P KFKPE F++++G +F PF TGKR C G+ L F+++ +IL H+
Sbjct: 378 DNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEGLARMELFLLLCAILQHF 437
Query: 373 DVSYP-NMDELKLVPACVAL--PAETYELEFTLR 403
++ + ++ L P + Y+L R
Sbjct: 438 NLKPLVDPKDIDLSPIHIGFGCIPPRYKLCVIPR 471
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 229 bits (587), Expect = 6e-71
Identities = 105/444 (23%), Positives = 179/444 (40%), Gaps = 89/444 (20%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGG--PLALCDWSSLQEKRRRIARKYCSPRIISSN 58
G P +V++ +E +KE LI G F G L + R + I+ SN
Sbjct: 52 FGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAER---------ANRGF---GIVFSN 99
Query: 59 YQL----------------MSKISL-----IETPILLKAIHKRILSGNKSVKIKPLLQSA 97
+ M K S+ E L++ + K + +L A
Sbjct: 100 GKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRK---TKASPCDPTFILGCA 156
Query: 98 FSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPV---DFLPWLNPFFSKHMNK 154
N+ + RFDY+D+Q ++ +E ++ +F P ++ F H NK
Sbjct: 157 PCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPGTH-NK 215
Query: 155 IAGWANEIREIMLERIIKQHLDTVDYDDHPRDFTDALL--QYFREDEELSWDHIMFDLED 212
+ ++ +LE +K+H +++D ++ P+DF D L + + S F +E
Sbjct: 216 LLKNVAFMKSYILE-KVKEHQESMDMNN-PQDFIDCFLMKMEKEKHNQPSE----FTIE- 268
Query: 213 FIGGHAALGNLVMLI------------------LIYLMKNPHCIDKIRQEIDAVTGGLRD 254
+L L+ L+K+P K+++EI+ V G R
Sbjct: 269 ---------SLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRS 319
Query: 255 VCMDDKYKMPYTEALVFETLRICA-SPI-VPHVATEDTTVAGYSVCKGTVVILN----NF 308
CM D+ MPYT+A+V E R P +PH T D Y + KGT ++++
Sbjct: 320 PCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLH 379
Query: 309 DLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSI 368
D + + P F P F+ + G K +F+PF GKR C+G+ L F+ +TSI
Sbjct: 380 D----NKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMELFLFLTSI 435
Query: 369 LNHYDVSYP-NMDELKLVPACVAL 391
L ++++ + L P
Sbjct: 436 LQNFNLKSLVDPKNLDTTPVVNGF 459
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 228 bits (585), Expect = 9e-71
Identities = 95/451 (21%), Positives = 175/451 (38%), Gaps = 77/451 (17%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGG--PLALCDWSSLQEKRRRIARKYCSPRIISSN 58
+G +V+ + ++E L+ Q F G A DW + + Y ++ SN
Sbjct: 51 LGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDW---------VFKGY---GVVFSN 98
Query: 59 YQL----------------MSKISL-----IETPILLKAIHKRILSGNKSVKIKPLLQSA 97
+ + K + E L+ A+ +G ++ L
Sbjct: 99 GERAKQLRRFSIATLRDFGVGKRGIEERIQEEAGFLIDALRG---TGGANIDPTFFLSRT 155
Query: 98 FSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHP--VDFLPWLNPFFSKHMNKI 155
SN+ + + RFDY+DK+ +++R IF + + + +
Sbjct: 156 VSNVISSIVFGDRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQA 215
Query: 156 AGWANEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDFIG 215
+ + + + ++ + T+D + PRDF D+ L +E+E+ + F L+
Sbjct: 216 FQLLQGLEDFIAK-KVEHNQRTLDPNS-PRDFIDSFLIRMQEEEKNP--NTEFYLK---- 267
Query: 216 GHAALGNLVMLI------------------LIYLMKNPHCIDKIRQEIDAVTGGLRDVCM 257
NLVM + LMK+P K+ +EID V G R
Sbjct: 268 ------NLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKF 321
Query: 258 DDKYKMPYTEALVFETLRICA-SPI-VPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDL 315
+D+ KMPY EA++ E R P+ + +DT + + KGT V +
Sbjct: 322 EDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPS 381
Query: 316 YWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVS 375
++ P F P+ F+++ G K F+PF GKR C G+ L F+ T+++ ++ +
Sbjct: 382 FFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQNFRLK 441
Query: 376 YP-NMDELKLVPACVAL--PAETYELEFTLR 403
+ ++ + P V Y + F R
Sbjct: 442 SSQSPKDIDVSPKHVGFATIPRNYTMSFLPR 472
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 225 bits (576), Expect = 3e-69
Identities = 75/424 (17%), Positives = 158/424 (37%), Gaps = 31/424 (7%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGGPLALCDWSSLQEKRRRIA-------------R 47
+G+ + + S L++ + + + W + ++ R R
Sbjct: 69 LGSFDSVHLGSPSLLEALYRTESAHPQRLEIKP-WKAYRDHRNEAYGLMILEGQEWQRVR 127
Query: 48 KYCSPRIISSNY-QLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQSAFSNMFTQYL 106
+++ + K L+ + + + + L L
Sbjct: 128 SAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICLVL 187
Query: 107 CSTRFDYEDKQLQTMVRNFDEIFYEINQGHP---VDFLPWLNPFFSKHMNKIAGWANEIR 163
RF K+ + F + V + +K + I
Sbjct: 188 YEKRFGLLQKETEEEALTFITAIKTMMSTFGKMMVTPVELHKRLNTKVWQAHTLAWDTIF 247
Query: 164 EIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHI---MFDLEDFIGGHAAL 220
+ ++ I L DF L + + LS + + +L +
Sbjct: 248 KS-VKPCIDNRLQRYS-QQPGADF----LCDIYQQDHLSKKELYAAVTEL--QLAAVETT 299
Query: 221 GNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRIC-AS 279
N +M IL L +NP ++ QE+ +V + +D MPY +A + E++R+ +
Sbjct: 300 ANSLMWILYNLSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSV 359
Query: 280 PIVPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIVVKPS 339
P + T + Y++ KGTV+ LN L +S+ +++ KF+PER++ ++ + P
Sbjct: 360 PFTTRTLDKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEK-KINPF 418
Query: 340 HFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVSYPNMDELKLVPACVALPAETYELE 399
+PFG GKR CIG++L + + I+ YD+ + + ++++ + +P+ +
Sbjct: 419 AHLPFGIGKRMCIGRRLAELQLHLALCWIIQKYDIVATDNEPVEMLHLGILVPSRELPIA 478
Query: 400 FTLR 403
F R
Sbjct: 479 FRPR 482
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 224 bits (574), Expect = 4e-69
Identities = 106/455 (23%), Positives = 184/455 (40%), Gaps = 85/455 (18%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGG--PLALCDWSSLQEK------------RRRIA 46
+G+ P +V+ + I+E L+ Q F G +A+ D Q RR +
Sbjct: 51 LGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIF-QGYGVIFANGERWRALRRFS 109
Query: 47 ----------RKYCSPRIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQS 96
++ RI E L++ + K S + L S
Sbjct: 110 LATMRDFGMGKRSVEERI------------QEEARCLVEELRK---SKGALLDNTLLFHS 154
Query: 97 AFSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVD---FLPWLNPFFSKHMN 153
SN+ + RFDY+D ++ F + F I+ F +L F H
Sbjct: 155 ITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPGTH-R 213
Query: 154 KIAGWANEIREIMLERIIKQHLDTVDYDDHPRDFTDALL--QYFREDEELSWDHIMFDLE 211
+I EI + + +++H T+D + PRDF D L + + S F +
Sbjct: 214 QIYRNLQEINTFIGQ-SVEKHRATLDPSN-PRDFIDVYLLRMEKDKSDPSSE----FHHQ 267
Query: 212 DFIGGHAALGNLVMLI------------------LIYLMKNPHCIDKIRQEIDAVTGGLR 253
NL++ + + ++K PH +++++EI+ V G R
Sbjct: 268 ----------NLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHR 317
Query: 254 DVCMDDKYKMPYTEALVFETLRICA-SPI-VPHVATEDTTVAGYSVCKGTVVILNNFDLN 311
+DD+ KMPYT+A++ E R+ P VPH T+DT GY + K T V
Sbjct: 318 PPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSAL 377
Query: 312 TSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNH 371
Y++ P F P F+ +G + + F+PF GKR C+G+ + F+ T+IL +
Sbjct: 378 HDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQN 437
Query: 372 YDVSYP-NMDELKLVPACVAL--PAETYELEFTLR 403
+ ++ P +++ L P + +Y++ F R
Sbjct: 438 FSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLAR 472
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 196 bits (500), Expect = 3e-58
Identities = 67/428 (15%), Positives = 148/428 (34%), Gaps = 29/428 (6%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGGPLALCDWSSLQEKRR-------------RIAR 47
+G + V E + + +G L W + + + + R
Sbjct: 53 LGNVESVYVIDPEDVALLFKSEGPNPERFLIPP-WVAYHQYYQRPIGVLLKKSAAWKKDR 111
Query: 48 KYCSPRIISSNY-QLMSKISLIETPILLKAIHKRIL---SGNKSVKIKPLLQSAFSNMFT 103
+ +++ + + + + +H+RI SGN S I L T
Sbjct: 112 VALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESIT 171
Query: 104 QYLCSTRFDYEDKQLQTMVRNFDEIFYEI--NQGHPVDFLPWLNPFFS-KHMNKIAGWAN 160
+ R ++ + + F + Y++ ++ P L F K +
Sbjct: 172 NVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAAWD 231
Query: 161 EIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHI---MFDLEDFIGGH 217
I + + D+ L + D ++S++ I + ++ GG
Sbjct: 232 VIFSKADIYTQNFYWELRQKGSVHHDYRGILYR-LLGDSKMSFEDIKANVTEM--LAGGV 288
Query: 218 AALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRI- 276
+ L + +N D +R E+ A + +P +A + ETLR+
Sbjct: 289 DTTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQAQGDMATMLQLVPLLKASIKETLRLH 348
Query: 277 CASPIVPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIVV 336
S + D + Y + T+V + + L ++ +P F P R++S+D +
Sbjct: 349 PISVTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDPTRWLSKD-KNI 407
Query: 337 KPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVSYPNMDELKLVPACVALPAETY 396
+ FG G R C+G+++ I + ++L ++ V ++ ++ + +P +
Sbjct: 408 TYFRNLGFGWGVRQCLGRRIAELEMTIFLINMLENFRVEIQHLSDVGTTFNLILMPEKPI 467
Query: 397 ELEFTLRK 404
F
Sbjct: 468 SFTFWPFN 475
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 173 bits (441), Expect = 1e-49
Identities = 58/412 (14%), Positives = 132/412 (32%), Gaps = 65/412 (15%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGGPLALCDWSSLQEKRRRIARKYCSPRIISSNY- 59
V+ +L SL A + + ++ + +I ++
Sbjct: 59 AAGLYITVLLDSNCYDAVLSDVASLDQTSYA-----------QVLMKRIFN--MILPSHN 105
Query: 60 ---QLMSKISLIE-------TPILLKAIHKRILSGNKSVKIKPLLQSAFSNMFTQYLCST 109
+ + + + + + +K + N+ L T
Sbjct: 106 PESEKKRAEMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKT 165
Query: 110 RF-------DYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPF-FSKHMNKIAGWANE 161
+ + L + F LP L +K +IA +
Sbjct: 166 GYLTVFGAENNNSAALTQIYEEFRRFD---------KLLPKLARTTVNKEEKQIA---SA 213
Query: 162 IREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDFIGGHAALG 221
RE + + + LD + + + ++ +++ + L G
Sbjct: 214 AREKLWKWLTPSGLDR---KPREQSWLGSYVKQLQDEGIDAEMQRRAMLLQLWVTQGNAG 270
Query: 222 NLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI 281
++ YL+ +P + +R+EI GG + + P +++++ETLR+ A+ +
Sbjct: 271 PAAFWVMGYLLTHPEALRAVREEIQ---GGKHLRLEERQKNTPVFDSVLWETLRLTAAAL 327
Query: 282 VPHVATEDTTVA-----GYSVCKGTVVILNNFDLNTSD-LYWDEPTKFKPERFISQDG-- 333
+ T+D + Y + +G + + F D +P F+ +RF++ D
Sbjct: 328 ITRDVTQDKKICLSNGQEYHLRRGDRLCVFPFISPQMDPQIHQQPEMFQFDRFLNADRTE 387
Query: 334 -------IVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVSYPN 378
+P+GT C G+ ++ +IL +DV +
Sbjct: 388 KKDFFKNGARVKYPSVPWGTEDNLCPGRHFAVHAIKELVFTILTRFDVELCD 439
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 165 bits (419), Expect = 2e-46
Identities = 50/419 (11%), Positives = 125/419 (29%), Gaps = 59/419 (14%)
Query: 1 MGTTPCIVVNSFELIKEIL-------------IVQGSLFGGPLALCDWSSLQEKRRRIAR 47
+ + + ++L FG + E
Sbjct: 54 LMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPMDGNTTENINDTFI 113
Query: 48 KYCSPRIISSNYQLMSKISLIETPILLKAIHKRILSG--NKSVKIKPLLQSAFSNMFTQY 105
K ++S + M + +++ + +
Sbjct: 114 KTLQGHALNSLTESMME----NLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLT 169
Query: 106 LCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANEIREI 165
+ D Q ++ N D F + + P L HM + A + RE
Sbjct: 170 IFGRDLTRRDTQKAHILNNLDN-FKQFD-----KVFPALVAGLPIHMFRTA---HNAREK 220
Query: 166 MLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHI---MFDLEDFIGGHAALGN 222
+ E + ++L + + + + A
Sbjct: 221 LAESLRHENLQKRESIS---ELISLRMFLNDTLSTFDDLEKAKTHLVV--LWASQANTIP 275
Query: 223 LVMLILIYLMKNPHCIDKIRQEIDAV----------TGGLRDVCMDDKYKMPYTEALVFE 272
L +++NP + +E+ G + + +P ++++ E
Sbjct: 276 ATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKE 335
Query: 273 TLRICASPIVPHVATEDTTV----AGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERF 328
+LR+ ++ + A ED T+ Y++ K ++ L ++ + +P FK +R+
Sbjct: 336 SLRLSSASLNIRTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRY 395
Query: 329 ISQDG---------IVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVSYPN 378
+ ++G + +++PFG+G C G+ + +L+++++
Sbjct: 396 LDENGKTKTTFYCNGLKLKYYYMPFGSGATICPGRLFAIHEIKQFLILMLSYFELELIE 454
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 161 bits (408), Expect = 9e-45
Identities = 54/426 (12%), Positives = 136/426 (31%), Gaps = 68/426 (15%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGS--------------LFGGPLALCDWSSLQEKRRRIA 46
+G V+ ++ + +F L +
Sbjct: 59 VGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFLMERIFDVQLP----HYSPSDEKARM 114
Query: 47 RKYCSPRIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQS-----AFSNM 101
+ R + + + M +L SG + + S + +
Sbjct: 115 KLTLLHRELQALTEAMYT----NLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAGYLTL 170
Query: 102 FTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANE 161
+ R Q + + F ++++ P L+ HM + +
Sbjct: 171 YGIEALP-RTHESQAQDRVHSADVFHTFRQLDRLLPKLARGSLSVGDKDHMCSVK---SR 226
Query: 162 IREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFRE----DEELSWDHIMFDLEDFIGGH 217
+ +++ + + H + ++ L + E +E + ++
Sbjct: 227 LWKLLSPARLAR-------RAHRSKWLESYLLHLEEMGVSEEMQARALVLQ----LWATQ 275
Query: 218 AALGNLVMLILIYLMKNPHCIDKIRQEIDAVTG-------GLRDVCMDDKYKMPYTEALV 270
+G +L++L+KNP + +R E++++ + P ++++
Sbjct: 276 GNMGPAAFWLLLFLLKNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVL 335
Query: 271 FETLRICASPIVPHVATEDTTVA-----GYSVCKGT-VVILNNFDLNTSDLYWDEPTKFK 324
E+LR+ A+P + D + +++ +G +++ + +P FK
Sbjct: 336 SESLRLTAAPFITREVVVDLAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFK 395
Query: 325 PERFISQDG---------IVVKPSHFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVS 375
RF++ DG ++ +P+G G C+G+ + + +L H D+
Sbjct: 396 YNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRSYAVNSIKQFVFLVLVHLDLE 455
Query: 376 YPNMDE 381
N D
Sbjct: 456 LINADV 461
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 158 bits (403), Expect = 2e-44
Identities = 77/414 (18%), Positives = 137/414 (33%), Gaps = 52/414 (12%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLF--GGPLALCDW---SSLQE-------KRRRIARK 48
+ I ++ + + + F PL+ ++L RR+I +
Sbjct: 51 LFGKNVIFISGALANRFLFTKEQETFQATWPLSTRILLGPNALATQMGEIHRSRRKILYQ 110
Query: 49 YCSPRIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQS-AFSNMFTQYLC 107
PR + S M I+ + + V P L+ F
Sbjct: 111 AFLPRTLDSYLPKM-------DGIVQGYLEQ--WGKANEVIWYPQLRRMTFDVA-----A 156
Query: 108 STRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANEIREIML 167
+ + Q + F+ + P+ LP F K + L
Sbjct: 157 TLFMGEKVSQNPQLFPWFETYIQGLFS-LPIP-LPN--TLFGKSQRA----RALLLAE-L 207
Query: 168 ERIIKQHLDTVDYDDHPRDFTDALLQYFRE------DEELSWDHIMFDLEDFIGGHAALG 221
E+IIK D LL + EL D I+ L GH L
Sbjct: 208 EKIIKARQQQ---PPSEEDALGILLAARDDNNQPLSLPELK-DQILLLL---FAGHETLT 260
Query: 222 NLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRIC-ASP 280
+ + + L ++ +++RQE + + +++ + KMPY + ++ E LR+
Sbjct: 261 SALSSFCLLLGQHSDIRERVRQEQNKLQLS-QELTAETLKKMPYLDQVLQEVLRLIPPVG 319
Query: 281 IVPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIV-VKPS 339
+D G+ KG +V + + +P KF PERF P
Sbjct: 320 GGFRELIQDCQFQGFHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPF 379
Query: 340 HFIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVSYPNMDELKLVPACVALPA 393
+PFG G R C+G++ + T ++ +D + L+LV P
Sbjct: 380 AHVPFGGGLRECLGKEFARLEMKLFATRLIQQFDWTLLPGQNLELVVTPSPRPK 433
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 152 bits (386), Expect = 1e-41
Identities = 67/430 (15%), Positives = 158/430 (36%), Gaps = 69/430 (16%)
Query: 1 MGTTPCIVVNSFELIKEILIVQ---------------GSLFGGPLALCD---WSSLQEKR 42
+ ++++ + I+ G G + + W K
Sbjct: 89 ISGEETLIISKSSSMFHIMKHNHYSSRFGSKLGLQCIGMHEKGIIFNNNPELW-----KT 143
Query: 43 RRIARKYCSP----RIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQSAF 98
R + + + ++ L + + + + V + LL+
Sbjct: 144 TR---PFFMKALSGPGLVRMVTVCAE----SLKTHLDRLEEVT-NESGYVDVLTLLRRVM 195
Query: 99 SNMFTQYLCSTRF--DYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIA 156
+ + ++ + ++ + + + + D ++ + K+ +
Sbjct: 196 LDT----SNTLFLRIPLDESAIVVKIQGYFDAWQAL--LIKPDIFFKISWLYKKYEKSVK 249
Query: 157 GWANEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDF-IG 215
+ I ++ E+ ++ + T + + DF L+ + +L+ +++ + + I
Sbjct: 250 DLKDAIEVLIAEK--RRRISTEEKLEECMDFATELILA-EKRGDLTRENVNQCILEMLIA 306
Query: 216 GHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLR 275
+ + +L + K+P+ + I +EI V G RD+ +DD K+ E ++E++R
Sbjct: 307 APDTMSVSLFFMLFLIAKHPNVEEAIIKEIQTVIGE-RDIKIDDIQKLKVMENFIYESMR 365
Query: 276 ICAS-PIVPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGI 334
+V A ED + GY V KGT +ILN ++ + ++ +P +F E F
Sbjct: 366 YQPVVDLVMRKALEDDVIDGYPVKKGTNIILNIGRMHRLE-FFPKPNEFTLENFAKN--- 421
Query: 335 VVKPSHFIPFGTGKRTCIGQKLVTDFTF------IVITSILNHYDVSYPN---MDELKLV 385
V +F PFG G R C G+ ++ ++L + V ++ ++ +
Sbjct: 422 -VPYRYFQPFGFGPRGCAGKY------IAMVMMKAILVTLLRRFHVKTLQGQCVESIQKI 474
Query: 386 PACVALPAET 395
P ET
Sbjct: 475 HDLSLHPDET 484
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 145 bits (368), Expect = 3e-39
Identities = 70/420 (16%), Positives = 149/420 (35%), Gaps = 70/420 (16%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGGP-------------LALCD---WSSLQEKRRR 44
+G V + EL + + GP +A + ++RR
Sbjct: 62 LGPKTVYAVTNPELTGALALNPDYHIAGPLWESLEGLLGKEGVATANGPLHR----RQRR 117
Query: 45 IARKYCSPRIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQSAFSNMFTQ 104
+ I + +M + + A+ +R K+V + +
Sbjct: 118 TIQPAFRLDAIPAYGPIMEEEA--------HALTER-WQPGKTVDATS----ESFRVAVR 164
Query: 105 YLCSTRF--DYEDKQLQTMVRNFDEIFYEINQ--GHPVDFLPWLNPFFSKHMNKIAGWAN 160
Y D++ + + +F + + P+ L L ++ N +
Sbjct: 165 VAARCLLRGQYMDERAERLCVALATVFRGMYRRMVVPLGPLYRLPLPANRRFNDALADLH 224
Query: 161 EIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFRE------DEELSWDHIM-FDLEDF 213
+ ++ II + + P D ALL+ + ++E+ D ++
Sbjct: 225 LL----VDEIIAERRAS---GQKPDDLLTALLEAKDDNGDPIGEQEIH-DQVVAI----L 272
Query: 214 IGGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFET 273
G + + +M +L L +P D+IR E++AVTGG R V +D K+ +T ++ E
Sbjct: 273 TPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTGG-RPVAFEDVRKLRHTGNVIVEA 331
Query: 274 LRICAS-PIVPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQD 332
+R+ + ++ A ++ + GY + G +I + + + +D+ +F P+R++ +
Sbjct: 332 MRLRPAVWVLTRRAVAESELGGYRIPAGADIIYSPYAIQRDPKSYDDNLEFDPDRWLPER 391
Query: 333 GIVVKPSHFIPFGTGKRTCIGQKLVTDFTF------IVITSILNHYDVSYPNMDELKLVP 386
V PF GKR C F ++ ++ Y +
Sbjct: 392 AANVPKYAMKPFSAGKRKCPSDH------FSMAQLTLITAALATKYRFEQVAGSNDAVRV 445
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 144 bits (365), Expect = 5e-39
Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 17/276 (6%)
Query: 121 MVRNFDEIFYEINQG-HPVDFLPWLNPFFSKHMNKIAGWANEIREIMLERIIKQHLDTVD 179
+ F ++++E+ +G P+ ++ P + + N + + + I+ +
Sbjct: 161 LDGRFAKLYHELERGTDPLAYVDPYLPI--ESFRRRDEARNGLVAL-VADIMNGRIANPP 217
Query: 180 YDDHPRDFTDALLQYFRE-------DEELSWDHIMFDLEDFIGGHAALGNLVMLILIYLM 232
D RD D L+ E +E++ + + GH LI LM
Sbjct: 218 TDKSDRDMLDVLIAVKAETGTPRFSADEIT-GMFIS-M--MFAGHHTSSGTASWTLIELM 273
Query: 233 KNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICAS-PIVPHVATEDTT 291
++ + E+D + G R V ++P E ++ ETLR+ I+ VA +
Sbjct: 274 RHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFE 333
Query: 292 VAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIV-VKPSHFIPFGTGKRT 350
V G+ + +G +V + N + +P F P R+ + +IPFG G+
Sbjct: 334 VQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHR 393
Query: 351 CIGQKLVTDFTFIVITSILNHYDVSYPNMDELKLVP 386
C+G + + +L Y+ E
Sbjct: 394 CVGAAFAIMQIKAIFSVLLREYEFEMAQPPESYRND 429
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 143 bits (363), Expect = 1e-38
Identities = 74/432 (17%), Positives = 155/432 (35%), Gaps = 84/432 (19%)
Query: 1 MGTTPCIVVNSFELIKEIL------------------IVQGSLFGGPLALCD---WSSLQ 39
+ ++V S E +K+ L + G ++ C+ W
Sbjct: 31 VFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH--- 87
Query: 40 EKRRRIARKYCSP----RIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQ 95
K+RR+ + S + ++ + L++ + + G V ++
Sbjct: 88 -KQRRVI----DLAFSRSSLVSLMETFNE----KAEQLVEILEAKA-DGQTPVSMQD--- 134
Query: 96 SAFSNMFTQY----LCSTRFDYEDKQLQTMVRNFDEIFYEINQG--HPVDFLPWLNPFFS 149
M T L F E L + + + +G + L P
Sbjct: 135 -----MLTYTAMDILAKAAFGMETSMLLGAQKPLSQAVKLMLEGITASRNTLAKFLPGKR 189
Query: 150 KHMNKIAGWANEIREIMLERIIKQHLDTVDY-DDHPRDFTDALLQYFREDEELSWDHIM- 207
K + ++ +R++ +++ + + ++ P D +L+ E+ + ++
Sbjct: 190 KQLREVRESIRFLRQV-GRDWVQRRREALKRGEEVPADILTQILK--AEEGAQDDEGLLD 246
Query: 208 ----FDLEDFIGGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKM 263
F FI GH N + ++ L + P + +++ E+D V G R + +D ++
Sbjct: 247 NFVTF----FIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRL 302
Query: 264 PYTEALVFETLRICASPIVPHV---ATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEP 320
Y ++ E+LR+ P E+T + G V T ++ + + + D Y+++P
Sbjct: 303 QYLSQVLKESLRLY--PPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDP 360
Query: 321 TKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKLVTDFTF------IVITSILNHYDV 374
F P+RF G + PF G R+CIGQ+ F +V+ +L +
Sbjct: 361 LTFNPDRF--GPGAPKPRFTYFPFSLGHRSCIGQQ------FAQMEVKVVMAKLLQRLEF 412
Query: 375 SYPNMDELKLVP 386
L
Sbjct: 413 RLVPGQRFGLQE 424
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 137 bits (348), Expect = 8e-37
Identities = 61/423 (14%), Positives = 125/423 (29%), Gaps = 66/423 (15%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGGPLA------LCDWSSLQE-------KRRRIAR 47
+ I + E K L L +++Q R+ +
Sbjct: 41 LLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQGMDGSAHIHRKMLFL 100
Query: 48 KYCSPRIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQSAFSNMFTQYLC 107
+P +LM T A+ + V + + + +
Sbjct: 101 SLMTPPHQKRLAELM-------TEEWKAAVTR--WEKADEVVLFEEAKEILCRVACYWAG 151
Query: 108 STRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANEIREIML 167
++ +++ +F ++ VD + P K A E +
Sbjct: 152 V---PLKETEVKERADDFIDM---------VDAFGAVGPRHWKGR-----RARPRAEEWI 194
Query: 168 ERIIKQHLDTVDYDDHPRDFTDALLQYFREDEE-LSWDHIMFDLEDFIGGHAALGNLVML 226
E +I+ + + + +ED L +L + + A+ ++
Sbjct: 195 EVMIEDARAGLL-KTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIVAISYFLVF 253
Query: 227 ILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRIC-ASPIVPHV 285
+ L ++P + +R E V E R P + +
Sbjct: 254 SALALHEHPKYKEWLRSG-----------------NSREREMFVQEVRRYYPFGPFLGAL 296
Query: 286 ATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFG 345
+D KGT V+L+ + N WD P +F+PERF ++ IP G
Sbjct: 297 VKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAEREE---NLFDMIPQG 353
Query: 346 TG----KRTCIGQKLVTDFTFIVITSILNHYDVSYPNMDELKLVPACVALPAETYELEFT 401
G C G+ + + + +++ + P + +LP + +
Sbjct: 354 GGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSLARMPSLPESGFVMSGI 413
Query: 402 LRK 404
RK
Sbjct: 414 RRK 416
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 136 bits (345), Expect = 4e-36
Identities = 53/293 (18%), Positives = 107/293 (36%), Gaps = 35/293 (11%)
Query: 114 EDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANEIREIMLERIIKQ 173
++++ + + D F P +LP P F + EI++I + I++
Sbjct: 171 LNEKVAQLYADLDGGFSHAAWLLP-GWLPL--PSFRRRDRAHR----EIKDI-FYKAIQK 222
Query: 174 HLDTVDYDDHPRDFTDALLQYFRE------DEELSWDHIMFDLEDFIGGHAALGNLVMLI 227
+ + D LL + D+E++ ++ L + G +
Sbjct: 223 RRQS---QEKIDDILQTLLDATYKDGRPLTDDEVA-GMLIGLL---LAGQHTSSTTSAWM 275
Query: 228 LIYLMKNPHCIDKIRQEIDAVTGG-LRDVCMDDKYKMPYTEALVFETLRICAS-PIVPHV 285
+L ++ K E V G L + D + + + ETLR+ I+ +
Sbjct: 276 GFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRM 335
Query: 286 ATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFG 345
A TVAGY++ G V ++ W E F P+R++ + + ++PFG
Sbjct: 336 ARTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFG 395
Query: 346 TGKRTCIGQKLVTDFTF------IVITSILNHYDVSYPNMDELKLVPACVALP 392
G+ CIG+ F + +++L Y+ + + +
Sbjct: 396 AGRHRCIGEN------FAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTTMIHT 442
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 134 bits (340), Expect = 2e-35
Identities = 85/417 (20%), Positives = 158/417 (37%), Gaps = 54/417 (12%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLF--GGPLA-LCDW-------SSLQEKRRRIARKYC 50
++S LIKE L + D+ S EK + A
Sbjct: 44 APGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKAHNIL 103
Query: 51 SP----RIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQ---------SA 97
P + + + +M I L++ + L+ ++ +++ +
Sbjct: 104 LPSFSQQAMKGYHAMMVDI----AVQLVQKWER--LNADEHIEVPEDMTRLTLDTIGLCG 157
Query: 98 FSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAG 157
F+ F + + + +MVR DE + + +P + ++ +
Sbjct: 158 FNYRFNSFYRDQPHPF----ITSMVRALDEAM------NKLQRANPDDPAYDENKRQFQE 207
Query: 158 WANEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFRED--EELSWDHIMFDLEDF-I 214
+ ++ +++II + + D D +L + E L ++I + + F I
Sbjct: 208 DIKVMNDL-VDKIIADRKASGEQSD---DLLTHMLNGKDPETGEPLDDENIRYQIITFLI 263
Query: 215 GGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETL 274
GH L+ L +L+KNPH + K +E V ++ Y ++ E L
Sbjct: 264 AGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVD-PVPSYKQVKQLKYVGMVLNEAL 322
Query: 275 RICAS-PIVPHVATEDTTVAG-YSVCKGTVVILNNFDLNTSDLYW-DEPTKFKPERFISQ 331
R+ + P A EDT + G Y + KG +++ L+ W D+ +F+PERF +
Sbjct: 323 RLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENP 382
Query: 332 DGIVVKPSH-FIPFGTGKRTCIGQKLVTDFTFIVITSILNHYDVSYPNMDELKLVPA 387
P H F PFG G+R CIGQ+ +V+ +L H+D EL +
Sbjct: 383 SA---IPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKET 436
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 123 bits (312), Expect = 1e-31
Identities = 52/282 (18%), Positives = 94/282 (33%), Gaps = 40/282 (14%)
Query: 112 DYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANEIREIMLERII 171
+ ++ ++ + FLP L + E+++I L II
Sbjct: 164 RLDARRFAQLLAKMESSLIPAAV-----FLPILLKLPLPQSARCHEARTELQKI-LSEII 217
Query: 172 KQH-LDTVDYDDHPRDFTDALLQYFRE------DEELSWDHIMFDLEDFIGGHAALGNLV 224
+ V+ D D LL E+ I+ + G
Sbjct: 218 IARKEEEVNKDSSTSDLLSGLLSAVYRDGTPMSLHEVC-GMIVAAM---FAGQHTSSITT 273
Query: 225 MLILIYLMKNPHC--IDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICAS-PI 281
+++LM + ++ +R+EI+ L + +MP+ E E++R +
Sbjct: 274 TWSMLHLMHPANVKHLEALRKEIEEFPAQLNY--NNVMDEMPFAERCARESIRRDPPLLM 331
Query: 282 VPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHF 341
+ D V Y V KG ++ + + + + EP ++ PER F
Sbjct: 332 LMRKVMADVKVGSYVVPKGDIIACSPLLSHHDEEAFPEPRRWDPERDEK------VEGAF 385
Query: 342 IPFGTGKRTCIGQKLVTDFTF------IVITSILNHYDVSYP 377
I FG G CIGQK F ++ + YD
Sbjct: 386 IGFGAGVHKCIGQK------FGLLQVKTILATAFRSYDFQLL 421
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 120 bits (304), Expect = 1e-30
Identities = 46/236 (19%), Positives = 79/236 (33%), Gaps = 28/236 (11%)
Query: 164 EIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFD-LEDFIGGHAALGN 222
+ +RII+ A+ + ++L H+ L + + A+
Sbjct: 190 DAWAKRIIEGIRAG-SIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLRPTVAIAV 248
Query: 223 LVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRIC-ASPI 281
+ + L + Q+ Y E V E R P
Sbjct: 249 YITFVAHALQTCSGIRAALVQQ------------------PDYAELFVQEVRRFYPFFPA 290
Query: 282 VPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHF 341
V A++D G + +G V+L+ + N W +P +F+PERF + D +F
Sbjct: 291 VVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFRAWDE---DSFNF 347
Query: 342 IPFGTG----KRTCIGQKLVTDFTFIVITSILNHYDVSYPNMDELKLVPACVALPA 393
IP G G C G+ +V + ++N P+ D ALP
Sbjct: 348 IPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAMRYDVPDQDLSIDFARLPALPK 403
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 121 bits (305), Expect = 1e-30
Identities = 53/371 (14%), Positives = 110/371 (29%), Gaps = 43/371 (11%)
Query: 26 FGGPLALCDWSSLQEKRRRIARKYCSPRIISSNYQLMSKISLIETPILLKAIHKRILSGN 85
G + + E + K ++ S+ + L ++ K + S
Sbjct: 120 LTGGYRILSYLDPSEPKHEK-LKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKEL-SLK 177
Query: 86 KSVKIKPLLQSAFSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLN 145
+L + + ++ P W+
Sbjct: 178 GKADFGGS----SDGTAFNFLARAFYG------------TNPADTKLKADAPGLITKWVL 221
Query: 146 PFFSKHMNKIAGWANEIREIMLERI-IKQHLDTVDYDDHPRDFTDALLQYFREDEELSWD 204
++ G I E ++ + L DY F ++ + E ++L
Sbjct: 222 FNLHPLLSI--GLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGEILVEADKLGIS 279
Query: 205 HIMFDLEDFIGGHAALGNLVMLILIYLMK-----NPHCIDKIRQEIDAVTGGL-RDVCMD 258
+ ++ ++K +++ +EI +V ++ M
Sbjct: 280 REEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMG 339
Query: 259 DKYKMPYTEALVFETLRICASPIVPH---VATEDTTV----AGYSVCKGTVVILNNFDLN 311
KM T+++V+E LR P V A +D + A + V G ++
Sbjct: 340 AIEKMELTKSVVYECLRFE--PPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPLAT 397
Query: 312 TSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFG-------TGKRTCIGQKLVTDFTFIV 364
+D +F PERF+ ++G + G G + C G+ V +
Sbjct: 398 RDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVARLF 457
Query: 365 ITSILNHYDVS 375
+ I YD
Sbjct: 458 VIEIFRRYDSF 468
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 115 bits (290), Expect = 1e-28
Identities = 60/340 (17%), Positives = 118/340 (34%), Gaps = 49/340 (14%)
Query: 74 LKAIHKRILSGNKSVKIKPLLQSAFSNMFTQYLC----STRFDYEDKQLQTMVR------ 123
LK + +L N S ++ P ++ ++ +F + + + D Q R
Sbjct: 122 LKNLLFFMLK-NSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAY 180
Query: 124 -NFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANEIREIMLERI-IKQHLDTVDYD 181
N + ++ P W+ + ++ W ++E +L + L Y+
Sbjct: 181 FNSNPEETKLGTSAPTLISSWVLFNLAPTLDLGLPW--FLQEPLLHTFRLPAFLIKSTYN 238
Query: 182 DHPRDFTDALLQY--------FREDEELSWDHIMFDLEDFIGGHAALGNLVMLILIYLMK 233
F +DE + F G N + I +
Sbjct: 239 KLYDYFQSVATPVMEQAEKLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIG---LA 295
Query: 234 NPHCIDKIRQEIDAVTG--GLRDVCMDDKYKMPYTEALVFETLRICASPIVPH---VATE 288
+ ++ +EI G +V ++ +MP T+++V+E+LRI P VP A
Sbjct: 296 GENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIE--PPVPPQYGKAKS 353
Query: 289 DTTV----AGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPF 344
+ T+ A + V KG ++ +D P ++ P+RF DG ++ +
Sbjct: 354 NFTIESHDATFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRF-VGDG--EALLKYVWW 410
Query: 345 GTG---------KRTCIGQKLVTDFTFIVITSILNHYDVS 375
G + C G+ V T + + + YD
Sbjct: 411 SNGPETESPTVENKQCAGKDFVVLITRLFVIELFRRYDSF 450
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 100 bits (252), Expect = 1e-23
Identities = 48/399 (12%), Positives = 105/399 (26%), Gaps = 100/399 (25%)
Query: 1 MGTTPCIVVNSFELIKEILIVQGSLFGGP------------LALCD---WSSLQEKRRRI 45
+ P ++ E ++ L+ +G+ L W + R+
Sbjct: 38 LPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESWK----EARKA 93
Query: 46 ARKYCSPRIISSNYQLMSKISLIETPILLKAIHKRILSGNKSVKIKPLLQSAFSNMFTQY 105
+ P+ + + M + L + +
Sbjct: 94 LKDPFLPKNVRGYREAMEEE----ARAFFGEWRGEERD----------LDHEMLALSLRL 139
Query: 106 LCSTRF--DYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANEIR 163
L F + ++ D I + P+ L K G +
Sbjct: 140 LGRALFGKPLSPSLAEHALKALDRIMAQTRS--PLALLDLAAE---ARFRKDRG---ALY 191
Query: 164 EIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDFIGGHAALGNL 223
I+ E + + GH + +
Sbjct: 192 REAEALIV---------HPPLSHLPRERAL-----SEA----VTL----LVAGHETVASA 229
Query: 224 VMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRIC-ASPIV 282
+ + L P ++ + +A + E LR+ + I+
Sbjct: 230 LTWSFLLLSHRPDWQKRVAESEEAALAAFQ------------------EALRLYPPAWIL 271
Query: 283 PHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFI 342
+ + GT ++L+ + L++ + F+PERF + +
Sbjct: 272 TRRLERPLLLGEDRLPPGTTLVLSPYVTQ--RLHFPDGEAFRPERF--LEERGTPSGRYF 327
Query: 343 PFGTGKRTCIGQKLVTDFTF------IVITSILNHYDVS 375
PFG G+R C+G+ F IV+ + + +
Sbjct: 328 PFGLGQRLCLGR------DFALLEGPIVLRAFFRRFRLD 360
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 93.4 bits (233), Expect = 6e-21
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 231 LMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPIVPH---VAT 287
L +P K+++EIDAV D +M Y + +V ETLR+ PI V
Sbjct: 299 LATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLF--PIAMRLERVCK 356
Query: 288 EDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTG 347
+D + G + KG VV++ ++ L+ YW EP KF PERF ++ + P + PFG+G
Sbjct: 357 KDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSG 416
Query: 348 KRTCIGQKLVTDFTFIVITSILNHYDVS 375
R CIG + + + +L ++
Sbjct: 417 PRNCIGMRFALMNMKLALIRVLQNFSFK 444
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 1e-10
Identities = 66/485 (13%), Positives = 142/485 (29%), Gaps = 188/485 (38%)
Query: 7 IVVNSFELIKEILIVQGS---LFGGPLALCDWSSLQEKRRRIARKYCSPRIISSNYQLMS 63
+ + FE L +G+ L L + + K + + + Y + RI++
Sbjct: 86 LCLTEFE--NCYL--EGNDIHALAAKL-LQENDTTLVKTKELIKNYITARIMAK-----R 135
Query: 64 KISLIETPILLKAI---HKRILS-----GNKSVKIKPLLQSAFSNMFTQY--LCSTRFDY 113
L +A+ + ++++ GN + L +++ Y L +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-----RDLYQTYHVLVGDLIKF 190
Query: 114 EDKQLQTMVR---NFDEIFYEINQGHPVDFLPWLN------------------PF----- 147
+ L ++R + +++F ++ L WL P
Sbjct: 191 SAETLSELIRTTLDAEKVF-----TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 148 FSKHMN--KIAGWA-NEIREIM------LERIIKQHL----DTVDYDDHPRDFTDALLQY 194
+ ++ K+ G+ E+R + + ++ D+ + F ++ +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE------SFFVSVRKA 299
Query: 195 FREDEELSWDHIMFDLEDFIG--GHAALGNLV-------------------MLILIYLMK 233
++F FIG + A N ML + L +
Sbjct: 300 IT---------VLF----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 234 N---PHCIDKIRQEIDA----------------VTG----------GLRDVCMD---DKY 261
+ ++K + A V+G LR D+
Sbjct: 347 EQVQDY-VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 262 KMPYTE-ALVFET--LRICA---SP--------IVPHVATEDTTVAG-------YSVCKG 300
++P++E L F L + + S I + + + Y G
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 301 -------TVVILNNFDLNTSD-LYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCI 352
+ D + W+ T+FK +H + FG G + +
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKA-------------THILDFGPGGASGL 512
Query: 353 GQKLV 357
G L
Sbjct: 513 G-VLT 516
Score = 51.6 bits (123), Expect = 3e-07
Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 103/282 (36%)
Query: 20 IVQGSL---FGGP---LALCDWSSLQ-EKRRRIARKYCSP-RIISSNYQLMSKISLIETP 71
I++ SL G P L++ + + Q + + + + ISL+
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE--------ISLVNGA 374
Query: 72 ILLKAIHKRILSGNKSVKIKPL-LQSAFSNMFTQYLCSTRFDYEDKQLQTMVRNFDE--- 127
++SG P L + + + D Q+ + F E
Sbjct: 375 ------KNLVVSGP------PQSLY-GLNLTLRKAKAPSGLD------QSRIP-FSERKL 414
Query: 128 IFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANEIREIMLERIIKQHL------------ 175
F FLP +PF S + + +++ + ++K ++
Sbjct: 415 KFS-------NRFLPVASPFHSHLLVPAS-------DLINKDLVKNNVSFNAKDIQIPVY 460
Query: 176 DTVDYDDHPRDFTDALL-----QYFREDEELSWD--------HIMFDLEDF-IGGHAALG 221
DT D D R + ++ R + W+ HI+ DF GG + LG
Sbjct: 461 DTFDGSD-LRVLSGSISERIVDCIIR--LPVKWETTTQFKATHIL----DFGPGGASGLG 513
Query: 222 NLVMLILIYLMKNPHCIDKIRQE--IDAVTGGLRDVCMDDKY 261
L + + + + G D+ DD Y
Sbjct: 514 VLT--------------HRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 33.1 bits (75), Expect = 0.21
Identities = 27/185 (14%), Positives = 60/185 (32%), Gaps = 66/185 (35%)
Query: 159 ANEIREIMLERIIKQHLDTVDYDDHPRD----------FTDALLQYFREDEELSWDHIM- 207
A++++E +I+ + + DD P + +L++ + +D ++
Sbjct: 30 ASQLQEQFN-KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE---PSKVGQFDQVLN 85
Query: 208 -----FDLEDFIGG---HAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDD 259
F+ ++ G HA L L +N + K ++ I
Sbjct: 86 LCLTEFE-NCYLEGNDIHALAAKL-------LQENDTTLVKTKELIKN------------ 125
Query: 260 KYKMPYTEALVF---ETLRICASPIVPHVATEDTTVAGYSVC--KGTVVILNNFDLNTSD 314
Y A + + S + V + + ++ +G NT D
Sbjct: 126 -----YITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAIFGGQG----------NTDD 168
Query: 315 LYWDE 319
Y++E
Sbjct: 169 -YFEE 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 1e-05
Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 68/234 (29%)
Query: 35 WSSLQEKR-RRIARKYCSPRII-----SSNYQLMS-KISLIETPILLKAIHKRILSGNKS 87
W + + + K ++ S + S + L A+H+ I+
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----- 450
Query: 88 VKIKPLLQSAFSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPF 147
Y FD +D + D+ FY
Sbjct: 451 ---------------DHYNIPKTFDSDDLIPPYL----DQYFYS---------------H 476
Query: 148 FSKHMNKI--AGWANEIREIMLE-RIIKQHLDTVDY-DDHPRDFTDALLQ------YFRE 197
H+ I R + L+ R ++Q + + + L Q Y +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 198 DEELSWDHIMFDLEDFIGGHAALGNLVM-----LILIYLMKNPH---CIDKIRQ 243
++ ++ ++ + DF+ NL+ L+ I LM + +Q
Sbjct: 537 NDP-KYERLVNAILDFLPKIEE--NLICSKYTDLLRIALM-AEDEAIFEEAHKQ 586
Score = 44.8 bits (105), Expect = 4e-05
Identities = 49/347 (14%), Positives = 102/347 (29%), Gaps = 92/347 (26%)
Query: 37 SLQEKRRRI--ARKYCSPRIISSNYQLMSKISLIETPILLKA--IHKRIL--SGNKSV-- 88
S+Q + RR+ ++ Y + ++ N ++ A + +IL + K V
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLN---------VQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 89 -----KIKPLLQSAFSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFY----EINQGHPVD 139
+ S T D+ +++ D E+ +P
Sbjct: 280 FLSAATTTHISLDHHSMTLT----------PDEVKSLLLKYLDCRPQDLPREVLTTNPR- 328
Query: 140 FLPWLNPFFSKHMNKIAGWANEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDE 199
L + + W + + L II+ L+ ++ ++ + F L F
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDR--LSVFPPSA 385
Query: 200 ELSWDHIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDD 259
HI L L ++ D I+ ++ V L + +
Sbjct: 386 -----HIPTIL------------LSLIWF----------DVIKSDVMVVVNKLHKYSLVE 418
Query: 260 KYKMPYT---EALVFETLRICASPIVPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLY 316
K T ++ E + H + V Y++ K ++ D Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALH----RSIVDHYNIPKT--FDSDDLIPPYLDQY 472
Query: 317 WDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKLVTDFTFI 363
+ + I H +R + + + DF F+
Sbjct: 473 F-----YS---HIGH--------HLKNIEHPERMTLFRMVFLDFRFL 503
Score = 34.1 bits (77), Expect = 0.097
Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 58/215 (26%)
Query: 173 QHLDT----VDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDFIGGHAALGNLVMLIL 228
H+D Y +D F ++ + D++D
Sbjct: 5 HHMDFETGEHQY--QYKDILSVFEDAFVDNFDCK------DVQDMPKS------------ 44
Query: 229 IYLMKNPHCIDKIRQEIDAVTGGLRDV-CMDDKYKMPYTEALVFETLRICASPIVPHVAT 287
++ D I DAV+G LR + K + + V E LRI ++ + T
Sbjct: 45 --ILSKEEI-DHIIMSKDAVSGTLRLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKT 100
Query: 288 EDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERFIS--------QDGIV-VKP 338
E + ++ + + D +++ F +S + ++ ++P
Sbjct: 101 E---------QRQPSMMTRMY-IEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRP 149
Query: 339 SHFI----PFGTGK-----RTCIGQKLVTDFTFIV 364
+ + G+GK C+ K+ F +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Score = 33.3 bits (75), Expect = 0.15
Identities = 38/293 (12%), Positives = 73/293 (24%), Gaps = 89/293 (30%)
Query: 89 KIKPLLQSAFSNMFTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWL---- 144
I + + AF + F C D L D I + L W
Sbjct: 20 DILSVFEDAFVDNFD---CKDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 145 -----NPFFSKHMNKIAGW-ANEIREIMLERIIKQHLDTVDYDD-HPRDFTD--ALLQYF 195
F + + + + I+ + + T Y + R + D +Y
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKT----EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 196 REDEELSWD----------------HIM---------------FDLEDFIGGHA---ALG 221
+ + + ++ + L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 222 N-------LVMLI-LIYLMKNPHC-----IDKIRQEIDAVTGGLRDVCMDDKYKMPYTEA 268
N L ML L+Y + I+ I ++ LR + Y+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NC 246
Query: 269 L----------VFETLRI-CASPIVPHVATEDTTVAGY-SVCKGTVVILNNFD 309
L + + C I+ + T V + S T + L++
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC--KIL--LTTRFKQVTDFLSAATTTHISLDHHS 295
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 43.4 bits (103), Expect = 8e-05
Identities = 30/181 (16%), Positives = 52/181 (28%), Gaps = 39/181 (21%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHI--MFDLEDFIGGHAALGNLVMLILIYLMKNPHCID 239
P D + ++ D M L +GG + N + + +L K+P
Sbjct: 215 KPGTDAISIVANGQVNGRPITSDEAKRMCGLL-LVGGLDTVVNFLSFSMEFLAKSPEHRQ 273
Query: 240 KIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPIVPHVATEDTTVAGYSVCK 299
++ + + + E LR + + T D G + K
Sbjct: 274 ELIERPERIPAA------------------CEELLRRFSLVADGRILTSDYEFHGVQLKK 315
Query: 300 GTVVILN----NFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQK 355
G ++L D + P R + FG G C+GQ
Sbjct: 316 GDQILLPQMLSGLD----ERENACPMHVDFSR---------QKVSHTTFGHGSHLCLGQH 362
Query: 356 L 356
L
Sbjct: 363 L 363
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 42.7 bits (101), Expect = 1e-04
Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 47/226 (20%)
Query: 146 PFFSKHMNKIAGWANEIREIMLERIIKQHLDTVDYDD--------HPR-DFTDALLQYFR 196
P S++ ++ E M + + Y D D ++
Sbjct: 176 PVLSEYARQMTRPEGNTPEEMATDLEAGNNGFYAYVDPIIRARVGGDGDDLITLMVNSEI 235
Query: 197 EDEELSWDHI--MFDLEDFIGGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRD 254
E ++ D + L +GG + N + +I+L ++P + ++R + + G
Sbjct: 236 NGERIAHDKAQGLISLL-LLGGLDTVVNFLSFFMIHLARHPELVAELRSDPLKLMRG--- 291
Query: 255 VCMDDKYKMPYTEALVFETLRICASPIVPHVATEDTTVAGYSVCKGTVVILN----NFDL 310
E R + +D G + +G +++L D
Sbjct: 292 ---------------AEEMFRRFPVVSEARMVAKDQEYKGVFLKRGDMILLPTALHGLD- 335
Query: 311 NTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
D EP K R + FG G C G L
Sbjct: 336 ---DAANPEPWKLDFSR---------RSISHSTFGGGPHRCAGMHL 369
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 42.3 bits (100), Expect = 2e-04
Identities = 26/197 (13%), Positives = 51/197 (25%), Gaps = 52/197 (26%)
Query: 178 VDYDDHP--RDFTDALLQYFREDE---------ELSWDHIMFDLEDFIGGHAALGNLVML 226
D +L + L D + L G N V+
Sbjct: 177 AAGVLRGAAWDARVSLDAQLSPQQLAVTEAAVAALPADPALRAL---FAGAEMTANTVVD 233
Query: 227 ILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI--VPH 284
++ + P ++I + A + V E LR +
Sbjct: 234 AVLAVSAEPGLAERIADDPAAA------------------QRTVAEVLR-LHPALHLERR 274
Query: 285 VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSH 340
AT + + + + +G V++ N D + EP + +R +
Sbjct: 275 TATAEVRLGEHVIGEGEEVVVVVAAANRD----PEVFAEPDRLDVDR---------PDAD 321
Query: 341 FIPFGTGKRTCIGQKLV 357
++LV
Sbjct: 322 RALSAHRGHPGRLEELV 338
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 41.9 bits (99), Expect = 3e-04
Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 46/186 (24%)
Query: 183 HPR-DFTDALLQYFREDEELSWD---HIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
P D AL+Q + + LS + L + G+ + + + LM P
Sbjct: 220 EPTDDLVSALVQARDQQDSLSEQELLDLAIGL--LVAGYESTTTQIADFVYLLMTRPELR 277
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI---VPHVATEDTTVAGY 295
++ + + + V E R + P A ED T+ G
Sbjct: 278 RQLLDRPELI------------------PSAVEELTRWVPLGVGTAFPRYAVEDVTLRGV 319
Query: 296 SVCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGTGKRT 350
++ G V+ + N D +F +R D + P+ + FG G
Sbjct: 320 TIRAGEPVLASTGAANRD----------QAQFPDADRI---D-VDRTPNQHLGFGHGVHH 365
Query: 351 CIGQKL 356
C+G L
Sbjct: 366 CLGAPL 371
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 41.5 bits (98), Expect = 3e-04
Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 43/184 (23%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHIM---FDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
P D +L + D +L GG + ++ ++ ++L ++P
Sbjct: 200 QPGDDLFSRILSEPVGGRPWTVDEARRMCRNL--LFGGLDTVAAMIGMVALHLARHPEDQ 257
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPIVPHVATEDTTVAGYSVC 298
+R+ D + E +R + V A D G ++
Sbjct: 258 RLLRERPDLIPAA------------------ADELMRRYPTVAVSRNAVADVDADGVTIR 299
Query: 299 KGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQD-GIVVKPSHFIPFGTGKRTCI 352
KG +V L N D P F+ PE + P G G C+
Sbjct: 300 KGDLVYLPSVLHNLD----------PASFEAPEEV---RFDRGLAPIRHTTMGVGAHRCV 346
Query: 353 GQKL 356
G L
Sbjct: 347 GAGL 350
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 41.5 bits (98), Expect = 4e-04
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 22/93 (23%)
Query: 272 ETLRICASPI---VPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E LR + VA ED V G + GT V + + D P F
Sbjct: 292 EVLRWS-PTLPVTATRVAAEDFEVNGVRIPTGTPVFMCAHVAHRD----------PRVFA 340
Query: 325 -PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
+RF D V + + I FG G C+G L
Sbjct: 341 DADRF---DITVKREAPSIAFGGGPHFCLGTAL 370
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 40.8 bits (96), Expect = 6e-04
Identities = 34/226 (15%), Positives = 66/226 (29%), Gaps = 47/226 (20%)
Query: 146 PFFSKHMNKIAGWANEIREIMLERIIKQHLDTVDYDD--------HPR-DFTDALLQYFR 196
N++ + E + + +Y D +L
Sbjct: 177 TKLGLLANEMTRPSGNTPEEQGRSLEAANKGFFEYVAPIIAARRGGSGTDLITRILNVEI 236
Query: 197 EDEELSWDHI--MFDLEDFIGGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRD 254
+ + + D + L +GG + N + ++IYL ++P + ++R+E +
Sbjct: 237 DGKPMPDDRALGLVSLL-LLGGLDTVVNFLGFMMIYLSRHPETVAEMRREPLKL------ 289
Query: 255 VCMDDKYKMPYTEALVFETLRICASPIVPHVATEDTTVAGYSVCKGTVVILN----NFDL 310
+ V E R A D G + +G +++L D
Sbjct: 290 ------------QRGVEELFRRFAVVSDARYVVSDMEFHGTMLKEGDLILLPTALHGLD- 336
Query: 311 NTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
D + D+P R + F G C G L
Sbjct: 337 ---DRHHDDPMTVDLSR---------RDVTHSTFAQGPHRCAGMHL 370
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 40.7 bits (96), Expect = 6e-04
Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 46/185 (24%)
Query: 183 HPR-DFTDALLQYFREDEELSWD---HIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
P D L+ E+ +L D I L + GH N + L + L+++P I
Sbjct: 209 EPEDGLLDELIARQLEEGDLDHDEVVMIALVL--LVAGHETTVNAIALGALTLIQHPEQI 266
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI--VPHVATEDTTVAGYS 296
D + ++ AV +V E LR S + +A ED V G +
Sbjct: 267 DVLLRDPGAV------------------SGVVEELLRFT-SVSDHIVRMAKEDIEVGGAT 307
Query: 297 VCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGTGKRTC 351
+ G V+++ N D ++ P+ F D H + FG G C
Sbjct: 308 IKAGDAVLVSITLMNRD----------AKAYENPDIF---D-ARRNARHHVGFGHGIHQC 353
Query: 352 IGQKL 356
+GQ L
Sbjct: 354 LGQNL 358
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 40.3 bits (95), Expect = 8e-04
Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 43/183 (23%)
Query: 183 HPR-DFTDALLQYFREDEELSWD---HIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
HP+ D LL+ RE ++L+ + L I GH NL+ ++ L+++P +
Sbjct: 201 HPQQDMISMLLKG-REKDKLTEEEAASTCILL--AIAGHETTVNLISNSVLCLLQHPEQL 257
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICAS-PIVPHVATEDTTVAGYSV 297
K+R+ D + V E LR + + VA+ED + G ++
Sbjct: 258 LKLRENPDLI------------------GTAVEECLRYESPTQMTARVASEDIDICGVTI 299
Query: 298 CKGTVVILN----NFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIG 353
+G V L N D + P F R P+ + FG G C+G
Sbjct: 300 RQGEQVYLLLGAANRD----PSIFTNPDVFDITR---------SPNPHLSFGHGHHVCLG 346
Query: 354 QKL 356
L
Sbjct: 347 SSL 349
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 40.4 bits (95), Expect = 9e-04
Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 42/188 (22%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHI---MFDLEDFIGGH----AALGNLVMLILIYLMKN 234
+P D L E LS I + ++ + L ++ L+ N
Sbjct: 235 NPGSDLISILCTSEYEGMALSDKDILALILNV--LLAATEPADKTLALMIYH----LLNN 288
Query: 235 PHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICAS-PIVPHVATEDTTVA 293
P ++ + + V + ETLR ++P ++DT V
Sbjct: 289 PEQMNDVLADRSLV------------------PRAIAETLRYKPPVQLIPRQLSQDTVVG 330
Query: 294 GYSVCKGTVVILN----NFDLNTSDLYWDEPTKFKPER-FISQDGIVVKPSHFIPFGTGK 348
G + K T+V N D +++P F R + + + FG+G
Sbjct: 331 GMEIKKDTIVFCMIGAANRD----PEAFEQPDVFNIHREDLGIKSAFSGAARHLAFGSGI 386
Query: 349 RTCIGQKL 356
C+G
Sbjct: 387 HNCVGTAF 394
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 40.0 bits (94), Expect = 0.001
Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 42/183 (22%)
Query: 183 HPR-DFTDALLQYFREDEELSWD---HIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
P D L+ ++L+ D L I GH NL+ + +++ P
Sbjct: 222 TPGEDLMSGLVAVEESGDQLTEDEIIATCNLL--LIAGHETTVNLIANAALAMLRTPGQW 279
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICAS-PIVPHVATEDTTVAGYSV 297
+ + A++ ET+R +V A +D T+ ++V
Sbjct: 280 AALAADGSRA------------------SAVIEETMRYDPPVQLVSRYAGDDLTIGTHTV 321
Query: 298 CKGTVVILN----NFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIG 353
KG ++L + D P +F P+R + FG G C+G
Sbjct: 322 PKGDTMLLLLAAAHRD----PTIVGAPDRFDPDR---------AQIRHLGFGKGAHFCLG 368
Query: 354 QKL 356
L
Sbjct: 369 APL 371
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 39.9 bits (94), Expect = 0.001
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 47/187 (25%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHIM---FDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
P+ D L + + + F L + G+A + N++ L + L ++P +
Sbjct: 206 EPKDDIISKLCTEQVKPGNIDKSDAVQIAFLL--LVAGNATMVNMIALGVATLAQHPDQL 263
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI---VPHVATEDTTVAGY 295
+++ V E R + + A ED +
Sbjct: 264 AQLKANPSLAPQF------------------VEELCRYH-TASALAIKRTAKEDVMIGDK 304
Query: 296 SVCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERF-ISQDGIVVKPSHFIPFGTGKR 349
V +I + N D F+ P+ F +++ P + FG G
Sbjct: 305 LVRANEGIIASNQSANRD----------EEVFENPDEFNMNRKW---PPQDPLGFGFGDH 351
Query: 350 TCIGQKL 356
CI + L
Sbjct: 352 RCIAEHL 358
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 39.9 bits (94), Expect = 0.001
Identities = 41/186 (22%), Positives = 60/186 (32%), Gaps = 47/186 (25%)
Query: 183 HPR-DFTDALLQYFREDEELSWD---HIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
P AL+ + E+ + L I GH ++ L +I L+ +P
Sbjct: 210 EPGAGLVGALVADQLANGEIDREELISTAMLL--LIAGHETTASMTSLSVITLLDHPEQY 267
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI---VPHVATEDTTVAGY 295
+R + V V E LR + VAT D V G
Sbjct: 268 AALRADRSLV------------------PGAVEELLRYL-AIADIAGGRVATADIEVEGQ 308
Query: 296 SVCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGTGKRT 350
+ G VI+ N D T ++ P+ D I H + FG G
Sbjct: 309 LIRAGEGVIVVNSIANRD----------GTVYEDPDAL---D-IHRSARHHLAFGFGVHQ 354
Query: 351 CIGQKL 356
C+GQ L
Sbjct: 355 CLGQNL 360
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 40.0 bits (94), Expect = 0.001
Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 47/185 (25%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHIM---FDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
P A++ ++ + + + + + G + ++ L ++ ++++P I
Sbjct: 204 EPGEGMIGAVVA--EYGDDATDEELRGFCVQV--MLAGDDNISGMIGLGVLAMLRHPEQI 259
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASP--IVPHVATEDTTVAGYS 296
D R + + + V E +R P P +A ED T+AG
Sbjct: 260 DAFRGDEQSA------------------QRAVDELIRYLTVPYSPTPRIAREDLTLAGQE 301
Query: 297 VCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGTGKRTC 351
+ KG VI + N D P +R D + +P + FG G C
Sbjct: 302 IKKGDSVICSLPAANRD----------PALAPDVDRL---D-VTREPIPHVAFGHGVHHC 347
Query: 352 IGQKL 356
+G L
Sbjct: 348 LGAAL 352
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 39.5 bits (93), Expect = 0.001
Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 47/186 (25%)
Query: 183 HPR-DFTDALLQYFREDEELSWD---HIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
+P D AL+ D + + L I H ++ L L+ +P +
Sbjct: 203 NPGDDLISALITTEDPDGVVDDMFLMNAAGTL--LIAAHDTTACMIGLGTALLLDSPDQL 260
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI---VPHVATEDTTVAGY 295
+R++ V V E LR + VAT D + G
Sbjct: 261 ALLREDPSLV------------------GNAVEELLRYL-TIGQFGGERVATRDVELGGV 301
Query: 296 SVCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGTGKRT 350
+ KG V+ + +FD P + PERF D I +P+ + FG G
Sbjct: 302 RIAKGEQVVAHVLAADFD----------PAFVEEPERF---D-ITRRPAPHLAFGFGAHQ 347
Query: 351 CIGQKL 356
CIGQ+L
Sbjct: 348 CIGQQL 353
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 39.5 bits (93), Expect = 0.001
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 272 ETLRICASPI---VPHVATEDTTVAGYSVCKGTVVILNNFDLNTSDLYWDEPTKFKPERF 328
E LR S + P VA D +AG + G V+ + N +F R
Sbjct: 265 EVLRHA-SIVEAPAPRVALADVRMAGRDIHAGDVLTCSMLATN-----RAPGDRFDITR- 317
Query: 329 ISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
+ + + FG G CIG L
Sbjct: 318 --------EKATHMAFGHGIHHCIGAPL 337
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 39.5 bits (93), Expect = 0.001
Identities = 40/182 (21%), Positives = 63/182 (34%), Gaps = 39/182 (21%)
Query: 183 HPR-DFTDALLQYFREDEELSWD---HIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
PR D L+ ++ + + G +++ L + L+ P
Sbjct: 215 EPRDDLISKLVTDHLVPGNVTTEQLLSTLGIT--INAGRETTTSMIALSTLLLLDRPELP 272
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI---VPHVATEDTTVAGY 295
++R++ D + A V E LR+ S VA ED ++G
Sbjct: 273 AELRKDPDLM------------------PAAVDELLRVL-SVADSIPLRVAAEDIELSGR 313
Query: 296 SVCKGTVVILNNFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGTGKRTCIGQ 354
+V VI N D P +F PER D +H + FG G C+GQ
Sbjct: 314 TVPADDGVIALLAGAN-----HD-PEQFDDPERV---D-FHRTDNHHVAFGYGVHQCVGQ 363
Query: 355 KL 356
L
Sbjct: 364 HL 365
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 39.5 bits (93), Expect = 0.002
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 18/90 (20%)
Query: 272 ETLRICAS-PIVPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFKPE 326
E LR S D + G + + VV++ N D +D P F E
Sbjct: 272 ECLRYDPSVQSNTRQLDVDVELRGRRLRRDDVVVVLAGAANRD----PRRYDRPDDFDIE 327
Query: 327 RFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
R P + FG G R C+G L
Sbjct: 328 R---------DPVPSMSFGAGMRYCLGSYL 348
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 39.2 bits (92), Expect = 0.002
Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 40/152 (26%)
Query: 213 FIGGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFE 272
G ++ +++ ++ L +P + D + V E
Sbjct: 239 LFAGLDSVASIMDNGVVLLAAHPDQRAAALADPDVM------------------ARAVEE 280
Query: 273 TLR---ICASPIVPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK- 324
LR S + P A+ED G ++ G +V+ + NFD F
Sbjct: 281 VLRTARAGGSVLPPRYASEDMEFGGVTIRAGDLVLFDLGLPNFD----------ERAFTG 330
Query: 325 PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
PE F D P+ + FG G CIG L
Sbjct: 331 PEEF---D-AARTPNPHLTFGHGIWHCIGAPL 358
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 39.2 bits (92), Expect = 0.002
Identities = 36/190 (18%), Positives = 56/190 (29%), Gaps = 56/190 (29%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHIM---FDLEDFIGGH---AALGNLVMLILIYLMKNP 235
D L E+ + L IGG +G ++ L L+
Sbjct: 212 SEGGDVYSMLGAA-VGRGEVGETEAVGLAGPL--QIGGEAVTHNVGQMLYL----LLTRR 264
Query: 236 HCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPIV----PHVATEDTT 291
+ ++R+ A + E LR S +A ED
Sbjct: 265 ELMARMRERPGAR------------------GTALDELLRWI-SHRTSVGLARIALEDVE 305
Query: 292 VAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGT 346
V G + G V ++ N D P F P+R D + P+ + +G
Sbjct: 306 VHGTRIAAGEPVYVSYLAANRD----------PDVFPDPDRI---D-LDRDPNPHLAYGN 351
Query: 347 GKRTCIGQKL 356
G C G L
Sbjct: 352 GHHFCTGAVL 361
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 38.8 bits (91), Expect = 0.003
Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 47/185 (25%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHI-MFDLEDFIGGH----AALGNLVMLILIYLMKNPH 236
+P D ++ + E LS D + F +GG L ++ L +
Sbjct: 198 NPGNDIMSRVIMSKIDGESLSEDDLIGFFTILLLGGIDNTARFLSSVFWR----LAWDIE 253
Query: 237 CIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPIVPHVATEDTTVAGYS 296
++ + + V E LR +V + T++ TV +
Sbjct: 254 LRRRLIAHPELIPNA------------------VDELLRFYGPAMVGRLVTQEVTVGDIT 295
Query: 297 VCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGTGKRTC 351
+ G +L + D + F P+ + I P+ + G G C
Sbjct: 296 MKPGQTAMLWFPIASRD----------RSAFDSPDNIV----IERTPNRHLSLGHGIHRC 341
Query: 352 IGQKL 356
+G L
Sbjct: 342 LGAHL 346
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 38.8 bits (91), Expect = 0.003
Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 40/152 (26%)
Query: 213 FIGGHAALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFE 272
F G + G+ + LI L++ P + + ++ + + A V E
Sbjct: 231 FGAGVISTGSFLTTALISLIQRPQLRNLLHEKPELI------------------PAGVEE 272
Query: 273 TLRICASPI---VPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK- 324
LRI +P +AT D V V KG +V++ NFD P F
Sbjct: 273 LLRIN-LSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFD----------PEHFPN 321
Query: 325 PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
P + P+ + FG G+ C G L
Sbjct: 322 PGSI---ELDRPNPTSHLAFGRGQHFCPGSAL 350
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 38.4 bits (90), Expect = 0.003
Identities = 40/186 (21%), Positives = 63/186 (33%), Gaps = 47/186 (25%)
Query: 183 HPR-DFTDALLQYFREDEELSWD---HIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
P D + R++ L + F L GH N++ L ++ L+ +P +
Sbjct: 211 EPGDDLFSRQIARQRQEGTLDHAGLVSLAFLL--LTAGHETTANMISLGVVGLLSHPEQL 268
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI---VPHVATEDTTVAGY 295
++ V E LR + +ATED + G
Sbjct: 269 TVVKANPGRT------------------PMAVEELLRYF-TIADGVTSRLATEDVEIGGV 309
Query: 296 SVCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGTGKRT 350
S+ G VI++ N+D P FK P D + H + FG G
Sbjct: 310 SIKAGEGVIVSMLSANWD----------PAVFKDPAVL---D-VERGARHHLAFGFGPHQ 355
Query: 351 CIGQKL 356
C+GQ L
Sbjct: 356 CLGQNL 361
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 38.4 bits (90), Expect = 0.003
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 24/93 (25%)
Query: 272 ETLRICASPIVPH---VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E LR SP H V T D T+ G + GT V+ N D P +F
Sbjct: 293 EVLR-WTSP-AMHVLRVTTADVTINGRDLPSGTPVVAWLPAANRD----------PAEFD 340
Query: 325 -PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
P+ F+ KP+ I FG G C+G L
Sbjct: 341 DPDTFL----PGRKPNRHITFGHGMHHCLGSAL 369
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 38.4 bits (90), Expect = 0.004
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 23/93 (24%)
Query: 272 ETLRICASPI---VPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E LR P+ E + G + G V++ + P +F
Sbjct: 302 EMLRYE-GPVESATYRFPVEPVDLDGTVIPAGDTVLVVLADAHRT----------PERFP 350
Query: 325 -PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
P RF D I + + FG G CIG L
Sbjct: 351 DPHRF---D-IRRDTAGHLAFGHGIHFCIGAPL 379
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 38.0 bits (89), Expect = 0.004
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 23/93 (24%)
Query: 272 ETLRICASPI---VPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E LR SP+ ED T +G ++ G +V+L N D
Sbjct: 275 EFLRFD-SPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRD----------ADWMP 323
Query: 325 -PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
P+R D I S + FG G C+G +L
Sbjct: 324 EPDRL---D-ITRDASGGVFFGHGIHFCLGAQL 352
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 38.0 bits (89), Expect = 0.004
Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 272 ETLRICASPIVPH----VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKF 323
ETLR H A ED V + G +I++ D + +F
Sbjct: 281 ETLRFS--TPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRD---ERAHGPTADRF 335
Query: 324 KPERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
R + I FG G C G L
Sbjct: 336 DLTR--------TSGNRHISFGHGPHVCPGAAL 360
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 38.0 bits (89), Expect = 0.005
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 22/92 (23%)
Query: 272 ETLRICASPI--VPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK- 324
E LR +P A E+ + G ++ + + V++ N D P +F
Sbjct: 280 EILRYI-APPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRD----------PKQFPD 328
Query: 325 PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
P RF D + + FG G C+G+ L
Sbjct: 329 PHRF---D-VTRDTRGHLSFGQGIHFCMGRPL 356
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 38.0 bits (89), Expect = 0.005
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 25/94 (26%)
Query: 272 ETLRICASPIVPH---VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E +R +P + H A D+ + G ++ KG V++ N D
Sbjct: 304 EIIR-WQTP-LAHMRRTAIADSELGGKTIRKGDKVVMWYYSGNRD----------DEVID 351
Query: 325 -PERF-ISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
PE F I + +P + FG G C+G +L
Sbjct: 352 RPEEFIIDRP----RPRQHLSFGFGIHRCVGNRL 381
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 37.7 bits (88), Expect = 0.005
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 24/93 (25%)
Query: 272 ETLRICASPIVPH---VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E +R +P V A DT V G ++ +G ++L+ N D F
Sbjct: 306 EAVR-WTAP-VKSFMRTALADTEVRGQNIKRGDRIMLSYPSANRD----------EEVFS 353
Query: 325 -PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
P+ F I P+ + FG G C+GQ L
Sbjct: 354 NPDEFD----ITRFPNRHLGFGWGAHMCLGQHL 382
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 37.2 bits (87), Expect = 0.007
Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 49/186 (26%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHIM---FDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
P +++ + ++ + + L +GG + ++ ++ L+ NP I
Sbjct: 213 DPDDGLLGMIVR--DHGDNVTDEELKGLCTAL--ILGGVETVAGMIGFGVLALLDNPGQI 268
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPI---VPHVATEDTTVAGY 295
+ + + + E +V E +R SP+ P +A +D + G
Sbjct: 269 ELLFESPEKA------------------ERVVNELVRYL-SPVQAPNPRLAIKDVVIDGQ 309
Query: 296 SVCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPFGTGKRT 350
+ G V+ + N D P+ D + FG G
Sbjct: 310 LIKAGDYVLCSILMANRD----------EALTPDPDVL---D-ANRAAVSDVGFGHGIHY 355
Query: 351 CIGQKL 356
C+G L
Sbjct: 356 CVGAAL 361
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 37.2 bits (87), Expect = 0.007
Identities = 32/155 (20%), Positives = 49/155 (31%), Gaps = 47/155 (30%)
Query: 213 FIGGH---AALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEAL 269
IGG G + L L+ P +++R E +
Sbjct: 240 QIGGEAVTNNSGQMFHL----LLSRPELAERLRSEPEIR------------------PRA 277
Query: 270 VFETLR---ICASPIVPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTK 322
+ E LR + + +A ED + G + G V ++ N D P
Sbjct: 278 IDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRD----------PEV 327
Query: 323 FK-PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
F P+R D P+ + FG G C G L
Sbjct: 328 FPDPDRI---D-FERSPNPHVSFGFGPHYCPGGML 358
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 37.2 bits (87), Expect = 0.007
Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 41/183 (22%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHI---MFDLEDFIGGHAALGNLVMLILIYLMKNPHCI 238
+P D+LL E++ + + GH A+G L+ + + P
Sbjct: 200 NPGDGLADSLLDA-ARAGEITESEAIATILVF--YAVGHMAIGYLIASGIELFARRPEVF 256
Query: 239 DKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICAS-PIVPHVATEDTTVAGYSV 297
R + A A++ E +R+ TED + G +
Sbjct: 257 TAFRNDESAR------------------AAIINEMVRMDPPQLSFLRFPTEDVEIGGVLI 298
Query: 298 CKGTVVILN----NFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIG 353
G+ + N D +D+P F R + + + FG G +C G
Sbjct: 299 EAGSPIRFMIGAANRD----PEVFDDPDVFDHTRPPAASR------N-LSFGLGPHSCAG 347
Query: 354 QKL 356
Q +
Sbjct: 348 QII 350
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 37.2 bits (87), Expect = 0.008
Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 21/92 (22%)
Query: 272 ETLRICASPI---VPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E LR + + A +D G S+ KG +V L D + P F
Sbjct: 293 EVLRFD-NILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALRD----GTVFSRPDVFD 347
Query: 325 PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
R S + +G G C G L
Sbjct: 348 VRR---------DTSASLAYGRGPHVCPGVSL 370
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 37.2 bits (87), Expect = 0.008
Identities = 46/233 (19%), Positives = 79/233 (33%), Gaps = 67/233 (28%)
Query: 139 DFLPWLNPFFSKHMNKIAGWAN-EIREIMLERIIKQHLDTVDYDDHPR-DFTDALLQYFR 196
F W + ++ + N + +LE + L
Sbjct: 120 LFKLWSDYIIGNKRDENFNYVNNRMVSRLLEIF-----------KSDSHGIINVLAGSSL 168
Query: 197 EDEELSWDHIM-FDLEDFIGGH----AALGNLVMLILIYLMKNPHCIDKIRQEIDAVTGG 251
++ +L+ D + + + IGG+ +GN++ + + +NP ID +
Sbjct: 169 KNRKLTMDEKIKYIMLLIIGGNETTTNLIGNMIRV----IDENPDIIDDALKNRSG---- 220
Query: 252 LRDVCMDDKYKMPYTEALVFETLRICASPIVPH----VATEDTTVAGYSVCKGTVVILN- 306
V ETLR SP + A ED+ + + KG VI+
Sbjct: 221 -----------------FVEETLR-YYSP-IQFLPHRFAAEDSYINNKKIKKGDQVIVYL 261
Query: 307 ---NFDLNTSDLYWDEPTKFKPERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
N D + ++DEP FK R + H + FG G C+G L
Sbjct: 262 GSANRD----ETFFDEPDLFKIGR---------REMH-LAFGIGIHMCLGAPL 300
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 37.3 bits (87), Expect = 0.008
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 24/93 (25%)
Query: 272 ETLRICASPIVPH---VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E +R +P V H A DT + G + G ++LN N D P +F
Sbjct: 328 EAIR-WTTP-VQHFMRTAATDTELCGQKIAAGDWLMLNYVAANHD----------PAQFP 375
Query: 325 -PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
P +F + + FG G C+G L
Sbjct: 376 EPRKFD----PTRPANRHLAFGAGSHQCLGLHL 404
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 36.9 bits (86), Expect = 0.009
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 272 ETLRICAS-PIVPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFKPE 326
E +R V A ED + + + +G+ V+ N D + +P
Sbjct: 293 ELMRYDPPVQAVTRWAYEDIRLGDHDIPRGSRVVALLGSANRD----PARFPDPDVLDVH 348
Query: 327 RFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
R + FG G C+G L
Sbjct: 349 R---------AAERQVGFGLGIHYCLGATL 369
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 36.8 bits (86), Expect = 0.011
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 18/90 (20%)
Query: 272 ETLRICA-SPIVPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFKPE 326
E +R + T D +AG ++ +G V++ N D WD+P ++
Sbjct: 290 EAVRFESPVQTFFRTTTRDVELAGATIGEGEKVLMFLGSANRD----PRRWDDPDRYDIT 345
Query: 327 RFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
R K S + FG+G C+GQ +
Sbjct: 346 R---------KTSGHVGFGSGVHMCVGQLV 366
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 35.3 bits (82), Expect = 0.029
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 24/93 (25%)
Query: 272 ETLRICASPIVPH---VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E LR +P V + V T DT G ++C G ++L NFD F
Sbjct: 269 EMLR-WTAP-VKNMCRVLTADTEFHGTALCAGEKMMLLFESANFD----------EAVFC 316
Query: 325 -PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
PE+F D + P+ + FG G C+G +L
Sbjct: 317 EPEKF---D-VQRNPNSHLAFGFGTHFCLGNQL 345
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 34.2 bits (79), Expect = 0.081
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 272 ETLRICA-SPIVPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFKPE 326
E LR P + T+ T VAG + +V N D D+P +F P
Sbjct: 280 EVLRYRPPFPQMQRTTTKATEVAGVPIPADVMVNTWVLSANRD----SDAHDDPDRFDPS 335
Query: 327 RFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
R + + FG G C+G L
Sbjct: 336 RKSGG------AAQ-LSFGHGVHFCLGAPL 358
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 33.8 bits (78), Expect = 0.094
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 25/94 (26%)
Query: 272 ETLRICASPIVPH---VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E +R A+P V A D ++G + KG V++ NFD F+
Sbjct: 305 EIVR-WATP-VTAFQRTALRDYELSGVQIKKGQRVVMFYRSANFD----------EEVFQ 352
Query: 325 -PERFISQDGIVVKPSHFIPF-GTGKRTCIGQKL 356
P F I+ P+ + F GTG CIG L
Sbjct: 353 DPFTFN----ILRNPNPHVGFGGTGAHYCIGANL 382
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 33.8 bits (78), Expect = 0.10
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 26/95 (27%)
Query: 272 ETLRICASPIVPH----VATEDTTVA-GYSVCKGTVVILN----NFDLNTSDLYWDEPTK 322
ETLR P V H A D + G ++ +G ++ + N P
Sbjct: 281 ETLRHE--PAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRH----------PDW 328
Query: 323 FK-PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
+ + F D + FG G C+G L
Sbjct: 329 HEDADTF---D-ATRTVKEHLAFGHGVHFCLGAPL 359
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 33.3 bits (77), Expect = 0.12
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 24/90 (26%)
Query: 272 ETLRICASPIVPH---VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E LR + P V V E + + +G +V + N D FK
Sbjct: 246 EALR-FSPP-VMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRD----------EEVFK 293
Query: 325 -PERFISQDGIVVKPSHFIPFGTGKRTCIG 353
P+ FI P+ + FG+G C+G
Sbjct: 294 DPDSFI----PDRTPNPHLSFGSGIHLCLG 319
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 33.5 bits (77), Expect = 0.12
Identities = 40/193 (20%), Positives = 66/193 (34%), Gaps = 60/193 (31%)
Query: 183 HPR-DFTDALLQYFREDEELSWDHIMFDLEDF-----IGGH----AALGNLVMLILIYLM 232
+ D T +L++ + E LS ++ F + G+ A+ + V+ L
Sbjct: 240 NHHDDLTSSLVEAEVDGERLSSR----EIASFFILLVVAGNETTRNAITHGVLA----LS 291
Query: 233 KNPHCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPIVPH---VATED 289
+ P D+ + D + V E +R ASP V + T+D
Sbjct: 292 RYPEQRDRWWSDFDGLAPTA-----------------VEEIVR-WASP-VVYMRRTLTQD 332
Query: 290 TTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK-PERFISQDGIVVKPSHFIPF 344
+ G + G V L N D +KF P F + P+ + F
Sbjct: 333 IELRGTKMAAGDKVSLWYCSANRD----------ESKFADPWTFD----LARNPNPHLGF 378
Query: 345 -GTGKRTCIGQKL 356
G G C+G L
Sbjct: 379 GGGGAHFCLGANL 391
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 32.9 bits (76), Expect = 0.14
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 24/90 (26%)
Query: 272 ETLRICASPIVPH---VATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK 324
E LR + P V E + ++ +G V + N D F
Sbjct: 246 EALR-YSPP-VMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRD----------EEVFH 293
Query: 325 -PERFISQDGIVVKPSHFIPFGTGKRTCIG 353
E+FI P+ + FG+G C+G
Sbjct: 294 DGEKFI----PDRNPNPHLSFGSGIHLCLG 319
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 33.0 bits (76), Expect = 0.17
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 21/92 (22%)
Query: 272 ETLRICA-SPIVPHVATEDTTVAGYSVCKGTVVILN----NFDLNTSDLYWDEPTKFK-- 324
E LR+ + + T D T+ ++ G V+L N D ++
Sbjct: 289 ELLRLTSPVQGLARTTTRDVTIGDTTIPAGRRVLLLYGSANRD----------ERQYGPD 338
Query: 325 PERFISQDGIVVKPSHFIPFGTGKRTCIGQKL 356
D + P + + F G C+G
Sbjct: 339 AAEL---D-VTRCPRNILTFSHGAHHCLGAAA 366
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/84 (15%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 162 IREIMLERIIKQHLDTVDYDDHPRD-FTDALLQYFREDEELSWDHIMFDLEDFIGGHAAL 220
++ ++E I L+ ++ ++H +D + +++ + + W ++ +L+
Sbjct: 90 LKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQ 149
Query: 221 GNLVMLILIYLMKNPHCIDKIRQE 244
LVM IL+ L ++ + +
Sbjct: 150 TELVMFILLRLAEDVVTFQTLPPQ 173
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel,
lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A*
2dvx_A* 3s4t_A*
Length = 327
Score = 28.9 bits (65), Expect = 2.5
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 143 WLNPFFSKHMNKIAGWANEIREIMLERIIKQHLDTVDYDDHPRDFTDALLQYFREDEELS 202
L P+ ++ W +R + + + +F L E+
Sbjct: 222 GL-PYMMWRIDHRNAWVKLPPRYPAKRRFMDYFNENFHITTSGNFRTQTLIDAI--LEIG 278
Query: 203 WDHIMF 208
D I+F
Sbjct: 279 ADRILF 284
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural
protein, kinetochore, mRNA transport, nucleus,
phosphoprotein, translocation; 3.53A {Homo sapiens}
Length = 644
Score = 29.1 bits (64), Expect = 3.6
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 182 DHPRDFTDALLQYFREDEELSWDHIMFDLEDFIGGHAALGNL 223
P L + + E LSW H + ++ HA L L
Sbjct: 404 SQPISQHGQLANFLQAHEHLSWLHEINS-QELEKAHATLLGL 444
>3erv_A Putative C39-like peptidase; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.10A {Bacillus
anthracis}
Length = 236
Score = 28.2 bits (62), Expect = 3.8
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 113 YEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSK-HMNKIAGWANEIREIMLERII 171
+K + ++ +E++ + G PV + N F+ ++ W ++ +
Sbjct: 120 LPNKAVDLTGKSIEELYKSVKAGQPV--VIITNATFAPLDEDEFTTWETNNGDVSITY-- 175
Query: 172 KQHLDTVD-YDDHPRDFTD 189
+H + YD D
Sbjct: 176 NEHCVVLIGYDQESVYIRD 194
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel,
metallo-enzyme, STRU function project, S2F, unknown
function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB:
1m68_A 1pb0_A
Length = 245
Score = 28.2 bits (63), Expect = 4.0
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 25/107 (23%)
Query: 182 DHPRDFTDALLQYFRED-----EELSWDHIMFDLE-DFIGGHAALGNLVMLILIYLMKNP 235
DH D DA + + + I+ +E + +
Sbjct: 39 DHGPDMEDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEID-------------- 84
Query: 236 HCIDKIRQEIDAVTGGLRDVCMDDKYKMPYTEALVFETLRICASPIV 282
C K+ +D + G + K T+A+ + AS V
Sbjct: 85 -CSGKMFDSLDLIIAGFHEPVFAPHDKATNTQAM----IATIASGNV 126
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase,
head-TO-head synth cholesterol biosynthesis,
oxidoreductase, transferase; 1.52A {Homo sapiens} PDB:
3vj9_A 3vja_A 3vjb_A 3vjc_A* 3asx_A* 3lee_A* 3q2z_A*
3q30_A* 1ezf_A*
Length = 343
Score = 28.3 bits (63), Expect = 4.2
Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 4/83 (4%)
Query: 174 HLDT-VDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDFIGGHAALGNLVMLILIYLM 232
LDT D + LL F M E L + + L +
Sbjct: 51 ALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKD---RQVLEDFPTISLEFRN 107
Query: 233 KNPHCIDKIRQEIDAVTGGLRDV 255
I + G+ +
Sbjct: 108 LAEKYQTVIADICRRMGIGMAEF 130
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for
structural genomics of infec diseases, csgid; 2.01A
{Staphylococcus aureus subsp}
Length = 341
Score = 28.3 bits (63), Expect = 5.4
Identities = 4/83 (4%), Positives = 25/83 (30%), Gaps = 15/83 (18%)
Query: 130 YEINQGHPVDFLPWLNPFFSKHMNKIAGWANEIREIMLERIIKQHLDTVDYDDHPRDFTD 189
++ L ++ +++ + ++ + + + + D
Sbjct: 229 DDVIPDAYCCVL-----VLRGE------LLDQHKDV-AQAFVQDYKKSGFKMNDRKQSVD 276
Query: 190 ALLQYFREDEEL---SWDHIMFD 209
+ +F++ ++ S +
Sbjct: 277 IMTHHFKQSRDVLTQSAAWTSYG 299
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 28.3 bits (62), Expect = 5.7
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 102 FTQYLCSTRFDYEDKQLQTMVRNFDEIFYEINQGHPVDFLPWLNPFFSKHMNKIAGWANE 161
+ Q + D +F + ++ G+ V + + + W N+
Sbjct: 304 YNQPYFGPAKGFPDNLPDIWYHHF--GYVKLELGYSVVIGEFGGKYGHGGDPRDVIWQNK 361
Query: 162 IREIMLERII 171
+ + M+E
Sbjct: 362 LVDWMIENKF 371
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction,
protein complex, GTP-binding, membrane, transducer,
lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo
sapiens} PDB: 1shz_C*
Length = 246
Score = 27.9 bits (61), Expect = 6.4
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 118 LQTMVRNFD---EIFYEIN----QGHPVDFLPWLNPFFSKHMNKIAGWANEIREIMLERI 170
LQ + F+ + P + F+ + K A + + +
Sbjct: 76 LQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEKTA-----VLRVPVPPN 130
Query: 171 IKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDF 213
+ LD D D ++ +E + + LEDF
Sbjct: 131 VAFELDRTRADLIS---EDVQRRFVQEVVQSQQVAVGRQLEDF 170
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS,
signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Length = 211
Score = 27.4 bits (60), Expect = 6.4
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 118 LQTMVRNFD---EIFYEIN----QGHPVDFLPWLNPFFSKHMNKIAGWANEIREIMLERI 170
LQ + F+ + P + F+ + K A + + +
Sbjct: 22 LQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEKTA-----VLRVPVPPN 76
Query: 171 IKQHLDTVDYDDHPRDFTDALLQYFREDEELSWDHIMFDLEDF 213
+ LD D D ++ +E + + LEDF
Sbjct: 77 VAFELDRTRADLIS---EDVQRRFVQEVVQSQQVAVGRQLEDF 116
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl
transferase domain, ATP-binding, nucleotide-BIND
nucleotidyltransferase; 2.40A {Escherichia coli}
Length = 498
Score = 28.0 bits (62), Expect = 6.6
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 189 DALLQYFREDEELSWDHIMFDLEDFIGGHAALGNLVMLILIYLMKNPHCIDKIRQEI 245
+A Y + + W+H + G L + +M P ++ E+
Sbjct: 321 EAFADYQKNEAWT-WEHQALVRARVVYGDPQLTAHFDAVRREIMTLPREGKTLQTEV 376
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa
MCM3-associated protein; mRNA export, transport
protein-DNA binding protein complex; 2.10A {Homo
sapiens}
Length = 101
Score = 26.4 bits (58), Expect = 7.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 157 GWANEIREIMLERIIKQHLDTVDYDD 182
GW ++++ E I ++ L+ V DD
Sbjct: 41 GWKDQLKAHCKEVIKEKGLEHVTVDD 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.430
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,568,316
Number of extensions: 411660
Number of successful extensions: 1252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 110
Length of query: 405
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 309
Effective length of database: 4,021,377
Effective search space: 1242605493
Effective search space used: 1242605493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.1 bits)