BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14859
(1097 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q89703|POL_CSVMV Putative enzymatic polyprotein OS=Cassava vein mosaic virus GN=ORF
3 PE=3 SV=1
Length = 652
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/467 (21%), Positives = 191/467 (40%), Gaps = 62/467 (13%)
Query: 456 KPPLVPLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSR-----LFLVPK--- 507
KPP++ Q P +HI+EM++ G + + T F + F+V K
Sbjct: 206 KPPML----YQETDLP---EFKMHIEEMIKEGFI---EEKTNFEDKKYSSPAFIVNKHSE 255
Query: 508 -GNGGTRPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTH 566
G TR V++ K LN+ K+ + N + + Y D ++H+ ++
Sbjct: 256 QKRGKTRMVIDYKDLNKKAKVVKYPIPNKDTLIHRSIQARYYSKFDCKSGFYHIKLEEDS 315
Query: 567 QRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVVYLDDFLLVNQD 626
+++ A + LPFG +P F ++ + R ++VY+DD L+ ++
Sbjct: 316 KKYTAFTVPQGYYQWKVLPFGYHNSPSIFQQ---FMDRIFRPYYDFIIVYIDDILVFSKT 372
Query: 627 PRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWD-------PHLDRMWLPE 679
+I I + G I++ +K+ L + FLG+ + PH+ L +
Sbjct: 373 IEEHKIHIAKFRDITLANGLIISKKKTELCKEKI-DFLGVQIEQGGIELQPHIINKILEK 431
Query: 680 DKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGAP 739
++ L+++L L+ R + +L A ++P IQ++ +
Sbjct: 432 HTKIKNKTELQSILGL----LNQIRHFIPHL--AQILLP--------IQKKLKIKDEEIW 477
Query: 740 HLTPINPAVLPKLEWWLNAL--PLSSPIFPRQVQHFISTDASDLGWGSQVDSS------- 790
T + + ++ + L + PI + I DAS+ +GS +
Sbjct: 478 TWTKEDEEKIKLIQDYSKNLVIKMKYPINKEDMNWIIEVDASNNAYGSCLKYKPKNSKIE 537
Query: 791 ----FLSGLWSREQQNWHINKKEMFAVHQALSLNLPLLQSSVVMVQSDNQTVVSYLRRQG 846
+ SG + +Q + IN+KE+ AV+Q L +V++DN V +++
Sbjct: 538 YLCRYNSGTFKENEQKYDINRKELIAVYQGLQSYSLFTCEGNKLVRTDNSQVYYWIKNDT 597
Query: 847 GTKSLSLLSEVEKI-FLLSQDWRIHILAQFIPGAYNSVADSLSRSKS 892
KS+ E I +LL++ + Q I G N +AD LSR S
Sbjct: 598 NKKSI----EFRNIKYLLAKIAVYNFEIQLIDGKTNIIADYLSRYNS 640
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-1 PE=4 SV=1
Length = 1333
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/430 (22%), Positives = 190/430 (44%), Gaps = 40/430 (9%)
Query: 475 AMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLIN 534
AM+ I + L++G+++ + + VPK G R V++ K LN+++ P + L
Sbjct: 427 AMNDEINQGLKSGIIRESKAINA--CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 484
Query: 535 HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQA 594
++ + +Q +DL AY + ++ + LA V +P+G++TAP
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 544
Query: 595 FASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSS 654
F N + L ++ VV Y+DD L+ ++ K + L + I+N K
Sbjct: 545 FQYFINTI--LGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 655 LSPAPVLQFLGIMWDPHL-DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFA 713
+ V +F+G H+ ++ + P NI + L + N R LG +++
Sbjct: 603 FHQSQV-KFIGY----HISEKGFTP-----CQENIDKVLQWKQPKNRKELRQFLGSVNYL 652
Query: 714 SFVIPMGRLHSRRIQRQASLLRLGAP-HLTPINPAVLPKLEWWLNALP-LSSPIFPRQVQ 771
IP S+ +LL+ TP + ++ L + P L F +++
Sbjct: 653 RKFIPKT---SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKI- 708
Query: 772 HFISTDASDLGWGSQVDSS----------FLSGLWSREQQNWHINKKEMFAVHQALSLNL 821
+ TDASD+ G+ + + S S+ Q N+ ++ KEM A+ ++L
Sbjct: 709 -LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 822 PLLQSSV--VMVQSDNQTVVSYLRRQGGTKSLSLLSEVEKIFLLSQDWRIHILAQFIPGA 879
L+S++ + +D++ ++ + + ++ L ++FL QD+ I + PG+
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR--WQLFL--QDFNFEI--NYRPGS 821
Query: 880 YNSVADSLSR 889
N +AD+LSR
Sbjct: 822 ANHIADALSR 831
>sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V
PE=3 SV=1
Length = 666
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 100/431 (23%), Positives = 178/431 (41%), Gaps = 44/431 (10%)
Query: 479 HIQEMLETGVLKRLDSTTGFLSRLFLVP----KGNGGTRPVLNLKGLNQFLSPKKFSLIN 534
I+E+L+ G++ + S + +S FLV + G R V+N K +NQ +L N
Sbjct: 258 QIKELLDLGLI--IPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPN 315
Query: 535 HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQA 594
+ + L+ S D ++ V + Q+ A + +PFGL AP
Sbjct: 316 MQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSI 375
Query: 595 FASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSS 654
F + + L +VY+DD ++ + + I+ G I++ +K++
Sbjct: 376 F---QRHMQTALNGADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKAN 432
Query: 655 LSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFAS 714
L + FLG+ D P++ L NI + + + + LG L++A
Sbjct: 433 LFKEKI-NFLGLEIDKGTH---CPQNH--ILENIHK--FPDRLEDKKHLQRFLGVLTYAE 484
Query: 715 FVIPMGRLHSRRIQRQASLLRLGAPHLTPINPAVLPKLEWWLNALPLSSPIFPRQVQHFI 774
IP +L R Q L + + T + + K++ L + P P+ H I
Sbjct: 485 TYIP--KLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFP--KLYLPKPEDHLI 540
Query: 775 -STDASDLGWGSQVDSSFLSGL----------WSREQQNWHINKKEMFAVHQALSLNLPL 823
TDASD WG + + L G+ + + ++N+H N KE+ AV Q ++
Sbjct: 541 IETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSNDKELLAVKQVITKFSAY 600
Query: 824 LQSSVVMVQSDNQTVVSYLR--RQGGTKSLSLLSEVEKIFLLSQDW--RIHILAQFIPGA 879
L V++DN+ +LR +G +K L+ Q+W + + + G
Sbjct: 601 LTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVR--------WQNWFSKYQFDVEHLEGV 652
Query: 880 YNSVADSLSRS 890
N +AD L+R
Sbjct: 653 KNVLADCLTRD 663
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 96/430 (22%), Positives = 188/430 (43%), Gaps = 40/430 (9%)
Query: 475 AMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLIN 534
AM+ I + L++G+++ + + VPK G R V++ K LN+++ P + L
Sbjct: 427 AMNDEINQGLKSGIIRESKAINA--CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 484
Query: 535 HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQA 594
++ + +Q +DL AY + ++ + LA V +P+G++ AP
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAH 544
Query: 595 FASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSS 654
F N + L + VV Y+D+ L+ ++ K + L + I+N K
Sbjct: 545 FQYFINTI--LGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 655 LSPAPVLQFLGIMWDPHL-DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFA 713
+ V +F+G H+ ++ + P NI + L + N R LG +++
Sbjct: 603 FHQSQV-KFIGY----HISEKGFTP-----CQENIDKVLQWKQPKNRKELRQFLGSVNYL 652
Query: 714 SFVIPMGRLHSRRIQRQASLLRLGAP-HLTPINPAVLPKLEWWLNALP-LSSPIFPRQVQ 771
IP S+ +LL+ TP + ++ L + P L F +++
Sbjct: 653 RKFIPKT---SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKI- 708
Query: 772 HFISTDASDLGWGSQVDSS----------FLSGLWSREQQNWHINKKEMFAVHQALSLNL 821
+ TDASD+ G+ + + S S+ Q N+ ++ KEM A+ ++L
Sbjct: 709 -LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 822 PLLQSSV--VMVQSDNQTVVSYLRRQGGTKSLSLLSEVEKIFLLSQDWRIHILAQFIPGA 879
L+S++ + +D++ ++ + + ++ L ++FL QD+ I + PG+
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR--WQLFL--QDFNFEI--NYRPGS 821
Query: 880 YNSVADSLSR 889
N +AD+LSR
Sbjct: 822 ANHIADALSR 831
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-7 PE=4 SV=1
Length = 1333
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 96/430 (22%), Positives = 188/430 (43%), Gaps = 40/430 (9%)
Query: 475 AMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLIN 534
AM+ I + L++G+++ + + VPK G R V++ K LN+++ P + L
Sbjct: 427 AMNDEINQGLKSGIIRESKAINA--CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 484
Query: 535 HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQA 594
++ + +Q +DL AY + ++ + LA V +P+G++ AP
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAH 544
Query: 595 FASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSS 654
F N + L + VV Y+D+ L+ ++ K + L + I+N K
Sbjct: 545 FQYFINTI--LGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 655 LSPAPVLQFLGIMWDPHL-DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFA 713
+ V +F+G H+ ++ + P NI + L + N R LG +++
Sbjct: 603 FHQSQV-KFIGY----HISEKGFTP-----CQENIDKVLQWKQPKNRKELRQFLGSVNYL 652
Query: 714 SFVIPMGRLHSRRIQRQASLLRLGAP-HLTPINPAVLPKLEWWLNALP-LSSPIFPRQVQ 771
IP S+ +LL+ TP + ++ L + P L F +++
Sbjct: 653 RKFIPKT---SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKI- 708
Query: 772 HFISTDASDLGWGSQVDSS----------FLSGLWSREQQNWHINKKEMFAVHQALSLNL 821
+ TDASD+ G+ + + S S+ Q N+ ++ KEM A+ ++L
Sbjct: 709 -LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 822 PLLQSSV--VMVQSDNQTVVSYLRRQGGTKSLSLLSEVEKIFLLSQDWRIHILAQFIPGA 879
L+S++ + +D++ ++ + + ++ L ++FL QD+ I + PG+
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR--WQLFL--QDFNFEI--NYRPGS 821
Query: 880 YNSVADSLSR 889
N +AD+LSR
Sbjct: 822 ANHIADALSR 831
>sp|P0C691|DPOL_DHBV3 Protein P OS=Duck hepatitis B virus (strain Germany/DHBV-3) GN=P
PE=1 SV=1
Length = 786
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 11/221 (4%)
Query: 501 RLFLVPKGNGGT---RPVLNL----KGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDL 553
+LFLV K + T R V++ KG N P+ +S N + L G IS+DL
Sbjct: 389 KLFLVDKNSRNTTEARLVVDFSQFSKGKNAMRFPRYWS-PNLSTLRRILPVGMPRISLDL 447
Query: 554 SQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSR-GMR 612
SQA++H+P+ LA+S V P G+ +P + + S + R +
Sbjct: 448 SQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISRRFNVW 507
Query: 613 VVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHL 672
Y+DDFLL + + R L S L LG +N K++ SP ++FLG D H
Sbjct: 508 TFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLGYQIDEHF 567
Query: 673 DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFA 713
M + E + L +++ + + ++ + +G+L+F
Sbjct: 568 --MKIEESRWKELRTVIKKIKVGEWYDWKCIQRFVGHLNFV 606
>sp|P03162|DPOL_DHBV1 Protein P OS=Duck hepatitis B virus (strain United States/DHBV-16)
GN=P PE=3 SV=2
Length = 836
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 19/225 (8%)
Query: 501 RLFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLINHFRIPSF-----------LQKGDYMI 549
+LFLV K + T + +QF K N R P + L G I
Sbjct: 439 KLFLVDKNSRNTEEARLVVDFSQFSKGK-----NAMRFPRYWSPNLSTLRRILPVGMPRI 493
Query: 550 SIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSR 609
S+DLSQA++H+P+ LA+S V P G+ +P + + S + R
Sbjct: 494 SLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISRR 553
Query: 610 -GMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMW 668
+ Y+DDFLL + + R L S L LG +N K++ SP ++FLG
Sbjct: 554 FNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLGYQI 613
Query: 669 DPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFA 713
D + M + E + L +++ + + ++ + +G+L+F
Sbjct: 614 DENF--MKIEESRWKELRTVIKKIKVGEWYDWKCIQRFVGHLNFV 656
>sp|P30028|DPOL_HPBDC Protein P OS=Duck hepatitis B virus (strain China) GN=P PE=3 SV=1
Length = 787
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 11/220 (5%)
Query: 501 RLFLVPKGNGGT---RPVLNL----KGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDL 553
+LFLV K + T R V++ KG N P+ +S N + L G IS+DL
Sbjct: 390 KLFLVDKNSRNTTEARLVVDFSQFSKGKNAMRFPRYWS-PNLSTLRRILPVGMPRISLDL 448
Query: 554 SQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSR-GMR 612
SQA++H+P+ LA+S V P G+ +P + + S + R +
Sbjct: 449 SQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIARRFNVW 508
Query: 613 VVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHL 672
Y+DDFLL + + R L + L LG +N K++ SP ++FLG D
Sbjct: 509 TFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVTEIRFLGYQIDQKF 568
Query: 673 DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSF 712
M + ED+ L +++ + ++ + +G+L+F
Sbjct: 569 --MKIEEDRWKELRTVIKKIKVGAWYDWKCIQRFVGHLNF 606
>sp|Q66403|DPOL_DHBVQ Protein P OS=Duck hepatitis B virus (isolate Shanghai/DHBVQCA34)
GN=P PE=3 SV=1
Length = 788
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 11/220 (5%)
Query: 501 RLFLVPKGNGGT---RPVLNL----KGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDL 553
+LFLV K + T R V++ KG N P+ +S N + L G IS+DL
Sbjct: 391 KLFLVDKNSRNTTEARLVVDFSQFSKGKNAMRFPRYWS-PNLSTLRRILPVGMPRISLDL 449
Query: 554 SQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSR-GMR 612
SQA++H+P+ LA+S V P G+ +P + + S + R +
Sbjct: 450 SQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIARRFNVW 509
Query: 613 VVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHL 672
Y+DDFLL + + R L S L LG +N K++ SP ++FLG D
Sbjct: 510 TFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQIDQKF 569
Query: 673 DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSF 712
M + E + + L +++ + ++ + +G+L+F
Sbjct: 570 --MKIEESRWIELRTVIKKIKIGAWYDWKCIQRFVGHLNF 607
>sp|P17193|DPOL_HPBDW Protein P OS=Duck hepatitis B virus (isolate white Shanghai duck
S31) GN=P PE=3 SV=1
Length = 788
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 11/221 (4%)
Query: 501 RLFLVPKGNGGT---RPVLNL----KGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDL 553
RLFLV K + T R V++ KG N P+ +S N + L G IS+DL
Sbjct: 391 RLFLVDKNSRNTTEARLVVDFSQFSKGKNAMRFPRYWS-PNLSTLRRILPVGMPRISLDL 449
Query: 554 SQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSR-GMR 612
SQA++H+P+ LA+S V P G+ +P + + S + R +
Sbjct: 450 SQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIARRFNVW 509
Query: 613 VVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHL 672
Y+DDFLL + + R L + L LG +N K++ SP ++FLG D
Sbjct: 510 TFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNDIRFLGYQIDQKF 569
Query: 673 DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFA 713
R + E + L +++ + ++ + +G+L+F
Sbjct: 570 MR--IEESRWKELRTVIKKIKIGAWYDWKCIQRFVGHLNFV 608
>sp|P17192|DPOL_HPBDB Protein P OS=Duck hepatitis B virus (isolate brown Shanghai duck
S5) GN=P PE=3 SV=1
Length = 788
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 11/220 (5%)
Query: 501 RLFLVPKGNGGT---RPVLNL----KGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDL 553
+LFLV K + T R V++ KG N P+ +S N + L G IS+DL
Sbjct: 391 KLFLVDKNSRNTTEARLVVDFSQFSKGKNAMRFPRYWS-PNLSTLRRILPVGMPRISLDL 449
Query: 554 SQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSR-GMR 612
SQA++H+P+ LA+S V P G+ +P + + S + R +
Sbjct: 450 SQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIARRFNIW 509
Query: 613 VVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHL 672
Y+DDFLL + + R L S L LG +N K++ SP ++FLG D
Sbjct: 510 TFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQIDQKF 569
Query: 673 DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSF 712
M + E + L +++ + ++ + +G+L+F
Sbjct: 570 --MKIEESRWKELRTVIKKIKIGAWYDWKCIQRFVGHLNF 607
>sp|P13846|DPOL_HHBV Protein P OS=Heron hepatitis B virus GN=P PE=3 SV=1
Length = 788
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 19/225 (8%)
Query: 501 RLFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLINHFRIPSF-----------LQKGDYMI 549
R+FLV K + T + +QF K N R P + L G I
Sbjct: 391 RIFLVDKNSRNTEEARLVVDFSQFSKGK-----NAMRFPKYWCPNLTTLRRILPVGMPRI 445
Query: 550 SIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSR 609
S+DLSQA++H+P+ LA+S V P G+ +P + + + + SR
Sbjct: 446 SLDLSQAFYHLPLAPASSSRLAVSDGKQVYYFRKAPMGVGLSPFLLHLFTTAIGAEIASR 505
Query: 610 -GMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMW 668
+ Y+DDFLL + R L + L G +N K + SP ++FLG +
Sbjct: 506 FNVWTFSYMDDFLLCHPSARHLNTISHAVCTFLQEFGIRINFDKMTPSPVTTIRFLG--Y 563
Query: 669 DPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFA 713
+ M + E + L +++ + + ++ + +G+L+F
Sbjct: 564 EISKQHMKIEESRWNELRTVIKKIKVGQWYDWKCIQRFIGHLNFV 608
>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1059
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 112/460 (24%), Positives = 188/460 (40%), Gaps = 58/460 (12%)
Query: 461 PLCSLQH-LATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPK-----GNGGTRP 514
P+ S Q+ LA + +QEML G+++ +S + + S ++VPK G R
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIR--ESNSPYNSPTWVVPKKPDASGANKYRV 263
Query: 515 VLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSY 574
V++ + LN+ P ++ + N I L K Y +IDL++ + + + A S
Sbjct: 264 VIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFST 323
Query: 575 NGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVVYLDDFLLVNQD--PRILEI 632
+PFGL AP F N + L ++ +VYLDD ++ + + I
Sbjct: 324 KSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNK--HCLVYLDDIIIFSTSLTEHLNSI 381
Query: 633 QGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTL 692
Q L + L + L K FLG + P D + + + + I+
Sbjct: 382 Q--LVFTKLADANLKLQLDKCEFLKKEA-NFLGHIVTP--DGI---KPNPIKVKAIVSYP 433
Query: 693 LASKTWNLDSARSLLGYL-----SFASFVIPMGRLHSRRIQRQASLLRLGAPHLTPINPA 747
+ +K + + L GY ++A PM +R T I+
Sbjct: 434 IPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKR---------------TKIDTQ 478
Query: 748 VLPKLEWW--LNALPLSSPI--FPRQVQHFI-STDASDLGWGSQVDS-----SFLSGLWS 797
L +E + L AL + PI P + F+ +TDAS+L G+ + SF+S +
Sbjct: 479 KLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLN 538
Query: 798 REQQNWHINKKEMFAVHQALSLNLPLLQSSVVMVQSDNQTVVSYLRRQGGTKSLSLLSEV 857
+ N+ +KE+ A+ A L ++ SD+Q LR K E
Sbjct: 539 DHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQP----LRWLHNLKEPGAKLER 594
Query: 858 EKIFLLSQDWRIHILAQFIPGAYNSVADSLSRSKSLPDWH 897
++ L ++I +I G NSVAD+LSR K + H
Sbjct: 595 WRVRLSEYQFKI----DYIKGKENSVADALSRIKIEENHH 630
>sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3
Length = 1149
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 15/244 (6%)
Query: 475 AMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLIN 534
++ + I ++L+ GVL + +ST + ++ VPK +G R VL+ + +N+ + +
Sbjct: 177 SIQIVIDDLLKQGVLIQQNSTMN--TPVYPVPKPDGKWRMVLDYREVNKTIPLIAAQNQH 234
Query: 535 HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQA 594
I S + +G Y ++DL+ ++ PI A ++ G T LP G +P
Sbjct: 235 SAGILSSIYRGKYKTTLDLTNGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPAL 294
Query: 595 FASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSS 654
F + V LL+ V Y+DD + + DP+ Q + SIL + G++V+L+KS
Sbjct: 295 FTAD---VVDLLKEIP-NVQAYVDDIYISHDDPQEHLEQLEKIFSILLNAGYVVSLKKSE 350
Query: 655 LSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFAS 714
++ V +FLG ++ + E + LT + L + +L +S+LG L+FA
Sbjct: 351 IAQREV-EFLGF----NITK----EGRGLTDTFKQKLLNITPPKDLKQLQSILGLLNFAR 401
Query: 715 FVIP 718
IP
Sbjct: 402 NFIP 405
>sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2
Length = 1143
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 15/244 (6%)
Query: 475 AMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLIN 534
++ + I ++L+ GVL +ST + ++ VPK +G R VL+ + +N+ + +
Sbjct: 177 SIQIVIDDLLKQGVLTPQNSTMN--TPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQH 234
Query: 535 HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQA 594
I + + + Y ++DL+ ++ PI A ++ G T LP G +P
Sbjct: 235 SAGILATIVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPAL 294
Query: 595 FASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSS 654
F + V LL+ V VY+DD L + DP+ Q + IL G++V+L+KS
Sbjct: 295 FTAD---VVDLLKEIP-NVQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSE 350
Query: 655 LSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFAS 714
+ V +FLG ++ + E + LT + L + +L +S+LG L+FA
Sbjct: 351 IGQKTV-EFLGF----NITK----EGRGLTDTFKTKLLNITPPKDLKQLQSILGLLNFAR 401
Query: 715 FVIP 718
IP
Sbjct: 402 NFIP 405
>sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1
Length = 1156
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 467 HLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGTRPVLNLKGLNQFLS 526
H+ + + I ++L+ GVL + +ST + ++ VPK NG R VL+ + +N+
Sbjct: 166 HINPKAKPDIQIVINDLLKQGVLIQKESTMN--TPVYPVPKPNGRWRMVLDYRAVNKVTP 223
Query: 527 PKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPF 586
+ + I L KG Y +IDLS ++ PI A ++ G T LP
Sbjct: 224 LIAVQNQHSYGILGSLFKGRYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYCWTVLPQ 283
Query: 587 GLATAPQAFASLSNWVASLLRSRGM-RVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLG 645
G +P F V LL +G+ V VY+DD + + + + + L G
Sbjct: 284 GFLNSPGLFTGD---VVDLL--QGIPNVEVYVDDVYISHDSEKEHLEYLDILFNRLKEAG 338
Query: 646 WIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQL--TLGNILRTLLASKTWNLDSA 703
+I++L+KS+++ + ++ FLG E + L T L + A T L
Sbjct: 339 YIISLKKSNIANS-IVDFLGF--------QITNEGRGLTDTFKEKLENITAPTT--LKQL 387
Query: 704 RSLLGYLSFASFVIP 718
+S+LG L+FA IP
Sbjct: 388 QSILGLLNFARNFIP 402
>sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines)
PE=1 SV=1
Length = 1675
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/393 (19%), Positives = 169/393 (43%), Gaps = 42/393 (10%)
Query: 479 HIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGT----RPVLNLKGLNQFLSPKKFSLIN 534
I+E+L+ ++K+ D T + F+V + R V N K LN + F++ +
Sbjct: 1202 QIKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPH 1261
Query: 535 HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQA 594
+ + +QK + DL + H+ +K + + + + + PFG+A AP A
Sbjct: 1262 KISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCA 1321
Query: 595 FASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSS 654
F L+ ++Y+DD L+ + + + K+ + + +G +++ +KS
Sbjct: 1322 FQRFMQESFGDLKF----ALLYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSK 1377
Query: 655 LSPAPVLQFLGIMWDPHLDRMWLPEDK---QLTLGNILRTLLASKTWNLDSARSLLGYLS 711
+ V ++LG+ + E K Q + + ++ +K L ++ LG L+
Sbjct: 1378 MFLKEV-EYLGVE---------IKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLN 1427
Query: 712 FA-SFVIPMGRLHSRRIQRQASLLRLGAPHLTPINPAVLPKLEWWLNAL-PLSSPIFPRQ 769
+A ++ + +L ++ + G + ++ K+E ++ + PL P
Sbjct: 1428 YARGYIKDLSKLVGPLYKKTG---KNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDY 1484
Query: 770 VQHFISTDASDLGWG----------SQVDSSFLSGLWS---REQQNWHINKKEMFAVHQA 816
+ I TDAS+ GWG S D+ ++G S E++ W E+ A+++A
Sbjct: 1485 I--IIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKTWTSLDYEIEAINEA 1542
Query: 817 LSLNLPLLQSSVVMVQSDNQTVVSYLRRQGGTK 849
L+ + +++D + +V ++ + K
Sbjct: 1543 LN-KFQIYLDKDFTIRTDCEAIVKGIKTEDYKK 1574
>sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3)
GN=pol PE=3 SV=2
Length = 1143
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 15/239 (6%)
Query: 480 IQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLINHFRIP 539
I ++L+ GVL + +S + ++ VPK +G R VL+ + +N+ + + I
Sbjct: 182 INDLLKQGVLIQQNSIMN--TPVYPVPKPDGKWRMVLDYREVNKTIPLIAAQNQHSAGIL 239
Query: 540 SFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLS 599
S + +G Y ++DLS ++ I A ++ G T LP G +P F +
Sbjct: 240 SSIFRGKYKTTLDLSNGFWAHSITPESYWLTAFTWLGQQYCWTRLPQGFLNSPALFTAD- 298
Query: 600 NWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAP 659
V LL+ V VY+DD + + DPR Q + S+L + G++V+L+KS ++
Sbjct: 299 --VVDLLKEVP-NVQVYVDDIYISHDDPREHLEQLEKVFSLLLNAGYVVSLKKSEIAQHE 355
Query: 660 VLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIP 718
V +FLG ++ + E + LT + L + +L +S+LG L+FA IP
Sbjct: 356 V-EFLGF----NITK----EGRGLTETFKQKLLNITPPRDLKQLQSILGLLNFARNFIP 405
>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3
SV=1
Length = 2180
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 34/335 (10%)
Query: 510 GGTRPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRF 569
G R V+N + LN FL KF + N + S L K DL ++ + I +
Sbjct: 1438 GKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPK 1497
Query: 570 LALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRI 629
+PFGL TAP F + + + +VY+DD LL ++
Sbjct: 1498 TGFCIPDRHFQWKVMPFGLKTAPSLFQKA---MIKIFQPILFSALVYIDDILLFSE---T 1551
Query: 630 LEIQGKLA---VSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDK-QLTL 685
LE KL +S++ G +++ +K L+ + QFLG+ + D + P L L
Sbjct: 1552 LEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKI-QFLGMDF---ADGTFSPAGHISLEL 1607
Query: 686 GNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGAPHLTPIN 745
T L+ K + LG +++ IP H I + +L+ P
Sbjct: 1608 QKFPDTNLSVK-----QIQQFLGIVNYIRDFIPEVTEH---ISPLSDMLKKKPPAWGKCQ 1659
Query: 746 PAVLPKLEWWLNALPLSSPIFPRQVQHFISTDASDLGW---------GSQVDSSFLSGLW 796
+ +L+ A + S P + + + TDASD W G + F SG +
Sbjct: 1660 DNAVKQLKQL--AQQVKSLHIPSEGKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKF 1717
Query: 797 SREQQNWHINKKEMFAVHQAL-SLNLPLLQSSVVM 830
+Q++H KE+ AV + N L+ ++ ++
Sbjct: 1718 KVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLV 1752
>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd)
PE=3 SV=1
Length = 2179
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 34/335 (10%)
Query: 510 GGTRPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRF 569
G R V+N + LN FL KF + N + S L K DL ++ + I +
Sbjct: 1437 GKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPK 1496
Query: 570 LALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRI 629
+PFGL TAP F + + + +VY+DD LL ++
Sbjct: 1497 TGFCIPDRHFQWKVMPFGLKTAPSLFQKA---MIKIFQPILFSALVYIDDILLFSE---T 1550
Query: 630 LEIQGKLA---VSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDK-QLTL 685
LE KL +S++ G +++ +K L+ + QFLG+ + D + P L L
Sbjct: 1551 LEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKI-QFLGMDF---ADGTFSPAGHISLEL 1606
Query: 686 GNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGAPHLTPIN 745
T L+ K + LG +++ IP H I + +L+ P
Sbjct: 1607 QKFPDTNLSVK-----QIQQFLGIVNYIRDFIPEVTEH---ISPLSDMLKKKPPAWGKCQ 1658
Query: 746 PAVLPKLEWWLNALPLSSPIFPRQVQHFISTDASDLGW---------GSQVDSSFLSGLW 796
+ +L+ A + S P + + + TDASD W G + F SG +
Sbjct: 1659 DNAVKQLKQL--AQQVKSLHIPSEGKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKF 1716
Query: 797 SREQQNWHINKKEMFAVHQAL-SLNLPLLQSSVVM 830
+Q++H KE+ AV + N L+ ++ ++
Sbjct: 1717 KVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLV 1751
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1058
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/460 (22%), Positives = 187/460 (40%), Gaps = 48/460 (10%)
Query: 460 VPLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPK-----GNGGTRP 514
+PL S + IQ+ML G+++ S + + S +++VPK G R
Sbjct: 207 LPLYSKYSYPQAYEQEVESQIQDMLNQGIIRT--SNSPYNSPIWVVPKKQDASGKQKFRI 264
Query: 515 VLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSY 574
V++ + LN+ + + N I L + +Y +IDL++ + + + A S
Sbjct: 265 VIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFST 324
Query: 575 NGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVVYLDDFLLVNQD-PRILEIQ 633
+PFGL AP F N + L ++ +VYLDD ++ + L+
Sbjct: 325 KHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNK--HCLVYLDDIIVFSTSLDEHLQSL 382
Query: 634 GKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLL 693
G L L + L K FLG + P D + +K + I + +
Sbjct: 383 G-LVFEKLAKANLKLQLDKCEFLKQET-TFLGHVLTP--DGIKPNPEK---IEAIQKYPI 435
Query: 694 ASKTWNLDSARSLLGYL-----SFASFVIPMGRLHSRRIQRQASLLRLGAPHLTPINPAV 748
+K + + L GY +FA PM + + ++ + P +
Sbjct: 436 PTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTT---------NPEYDSA 486
Query: 749 LPKLEWWLNALP-LSSPIFPRQVQHFISTDASDLGWGSQVDS-----SFLSGLWSREQQN 802
KL++ ++ P L P F ++ ++TDASD+ G+ + S++S + + N
Sbjct: 487 FKKLKYLISEDPILKVPDFTKKFT--LTTDASDVALGAVLSQDGHPLSYISRTLNEHEIN 544
Query: 803 WHINKKEMFAVHQALSLNLPLLQSSVVMVQSDNQTVVSYLRRQGGTKSLSLLSEVEKIFL 862
+ +KE+ A+ A L + SD+Q + R + L+ ++ L
Sbjct: 545 YSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRW----RVKL 600
Query: 863 LSQDWRIHILAQFIPGAYNSVADSLSRSKSLPDWHLSRSA 902
D+ I ++I G N VAD+LSR K L + +LS
Sbjct: 601 SEFDFDI----KYIKGKENCVADALSRIK-LEETYLSEQT 635
>sp|Q87040|POL_SFVCP Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee)
GN=pol PE=3 SV=1
Length = 1146
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 114/244 (46%), Gaps = 15/244 (6%)
Query: 475 AMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLIN 534
++ + I ++L+ GVL +ST + ++ VPK +G R VL+ + +N+ + +
Sbjct: 177 SIQIVIDDLLKQGVLTPQNSTMN--TPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQH 234
Query: 535 HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQA 594
I + + + Y ++DL+ ++ PI A ++ G T LP G +P
Sbjct: 235 SAGILATIVRQKYKTTLDLANGFWAHPITPDSYWLTAFTWQGKQYCWTRLPQGFLNSPAL 294
Query: 595 FASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSS 654
F + + LL+ V VY+DD L + +P Q + IL G++V+L+KS
Sbjct: 295 FTADA---VDLLKEVP-NVQVYVDDIYLSHDNPHEHIQQLEKVFQILLQAGYVVSLKKSE 350
Query: 655 LSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFAS 714
+ V +FLG ++ + E + LT + L + +L +S+LG L+FA
Sbjct: 351 IGQRTV-EFLGF----NITK----EGRGLTDTFKTKLLNVTPPKDLKQLQSILGLLNFAR 401
Query: 715 FVIP 718
IP
Sbjct: 402 NFIP 405
>sp|O92815|POL_WDSV Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1
SV=2
Length = 1752
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 11/225 (4%)
Query: 508 GNGGTRPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKG-DYMISIDLSQAYFHVPIKTTH 566
G R + +L+ +N ++P + + + S L + IDLS A+F VPI
Sbjct: 816 GRDEYRMIHDLRAINNIVAPLTAVVASPTTVLSNLAPSLHWFTVIDLSNAFFSVPIHKDS 875
Query: 567 QRFLALSYNGDVLAMTCLPFGLATAPQAFA-SLSNWVASLLRSRGMRVVVYLDDFLLVNQ 625
Q A ++ G T LP G +P F+ +L + + + +Y+DD L+ ++
Sbjct: 876 QYLFAFTFEGHQYTWTVLPQGFIHSPTLFSQALYQSLHKIKFKISSEICIYMDDVLIASK 935
Query: 626 DPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTL 685
D + + L S G V+ +K L V+ +LG + P R LP D+++T+
Sbjct: 936 DRDTNLKDTAVMLQHLASEGHKVSKKKLQLCQQEVV-YLGQLLTPE-GRKILP-DRKVTV 992
Query: 686 GNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQ 730
+ + R+ LG + + IP +HS+ +++Q
Sbjct: 993 SQF------QQPTTIRQIRAFLGLVGYCRHWIPEFSIHSKFLEKQ 1031
>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
Length = 1547
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 164/401 (40%), Gaps = 39/401 (9%)
Query: 502 LFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVP 561
+ LVPK +G R ++ + LN+ F L + S + ++DL Y +P
Sbjct: 636 VVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIP 695
Query: 562 IKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVV-VYLDDF 620
++ + A T +PFGL AP FA ++A R +R V VYLDD
Sbjct: 696 MEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR---YMADTFRD--LRFVNVYLDDI 750
Query: 621 LLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPED 680
L+ ++ P + L + IV +K + +FLG + + ++ +
Sbjct: 751 LIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEET-EFLG--YSIGIQKIAPLQH 807
Query: 681 KQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGAPH 740
K +R KT + A+ LG +++ IP + +I + L
Sbjct: 808 KCAA----IRDFPTPKT--VKQAQRFLGMINYYRRFIP----NCSKIAQPIQLFICDKSQ 857
Query: 741 LTPINPAVLPKLEWWLNALPLSSPIFPRQVQHFISTDASDLGWGS---QVDSS------- 790
T + KL+ L P+ P F + + ++TDAS G G+ +VD+
Sbjct: 858 WTEKQDKAIDKLKDALCNSPVLVP-FNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 916
Query: 791 -FLSGLWSREQQNWHINKKEMFAVHQALSLNLPLLQSSVVMVQSDNQTVVSYLRRQGGTK 849
+ S Q+N+ + E+ + +AL +L +++D+ +++S + +
Sbjct: 917 GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 976
Query: 850 SLSLLSEVEKIFLLSQDWRIHILAQFIPGAYNSVADSLSRS 890
+ + L + D+ + LA G N VAD++SR+
Sbjct: 977 RVQRWLDD----LATYDFTLEYLA----GPKNVVADAISRA 1009
>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1003
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 103/439 (23%), Positives = 190/439 (43%), Gaps = 56/439 (12%)
Query: 480 IQEMLETGVLKRLDSTTGFLSRLFLVPK-----GNGGTRPVLNLKGLNQFLSPKKFSLIN 534
I E+L+ G+++ S + + S +++VPK G R V++ K LN P + + +
Sbjct: 143 IDELLQDGIIR--PSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPD 200
Query: 535 HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQA 594
+ L Y ++DL+ + + +K + A S LPFGL AP
Sbjct: 201 INATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAI 260
Query: 595 FASLSNWVASLLRSR-GMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKS 653
F + + +LR G VY+DD ++ ++D +L ++ L VNL+KS
Sbjct: 261 FQRM---IDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317
Query: 654 SLSPAPVLQFL-------GIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSL 706
V +FL GI DP R ++ + R L + + + +
Sbjct: 318 HFLDTQV-EFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR----KFI 372
Query: 707 LGYLSFASFVIPMGR-LHSRRIQRQASL--LRLGAPHLTPINPAVLPKLEWWLNALPLSS 763
Y A + + R L++ Q+S + L L N L ++ SS
Sbjct: 373 QDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFND---------LKSILCSS 423
Query: 764 PI--FPRQVQHF-ISTDASDLGWG---SQVDS------SFLSGLWSREQQNWHINKKEMF 811
I FP + F ++TDAS+ G SQ D +++S ++ ++N+ +KEM
Sbjct: 424 EILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEML 483
Query: 812 AVHQAL-SLNLPLLQSSVVMVQSDNQTVVSYLRRQGGTKSLSLLSEVEKIFLLSQDWRIH 870
A+ +L +L L + + V +D+Q + L G ++ + +++++ +++
Sbjct: 484 AIIWSLDNLRAYLYGAGTIKVYTDHQPLTFAL----GNRNFN--AKLKRWKARIEEYNCE 537
Query: 871 ILAQFIPGAYNSVADSLSR 889
++ + PG N VAD+LSR
Sbjct: 538 LI--YKPGKSNVVADALSR 554
>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
Length = 1498
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 164/401 (40%), Gaps = 39/401 (9%)
Query: 502 LFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVP 561
+ LVPK +G R ++ + LN+ F L + S + ++DL Y +P
Sbjct: 662 VVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIP 721
Query: 562 IKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVV-VYLDDF 620
++ + A T +PFGL AP FA ++A R +R V VYLDD
Sbjct: 722 MEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR---YMADTFRD--LRFVNVYLDDI 776
Query: 621 LLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPED 680
L+ ++ P + L + IV +K + +FLG + + ++ +
Sbjct: 777 LIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEET-EFLG--YSIGIQKIAPLQH 833
Query: 681 KQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGAPH 740
K +R KT + A+ LG +++ IP + +I + L
Sbjct: 834 KCAA----IRDFPTPKT--VKQAQRFLGMINYYRRFIP----NCSKIAQPIQLFICDKSQ 883
Query: 741 LTPINPAVLPKLEWWLNALPLSSPIFPRQVQHFISTDASDLGWGS---QVDSS------- 790
T + KL+ L P+ P F + + ++TDAS G G+ +VD+
Sbjct: 884 WTEKQDKAIEKLKAALCNSPVLVP-FNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 942
Query: 791 -FLSGLWSREQQNWHINKKEMFAVHQALSLNLPLLQSSVVMVQSDNQTVVSYLRRQGGTK 849
+ S Q+N+ + E+ + +AL +L +++D+ +++S + +
Sbjct: 943 GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 1002
Query: 850 SLSLLSEVEKIFLLSQDWRIHILAQFIPGAYNSVADSLSRS 890
+ + L + D+ + LA G N VAD++SR+
Sbjct: 1003 RVQRWLDD----LATYDFTLEYLA----GPKNVVADAISRA 1035
>sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3
SV=1
Length = 659
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 154/390 (39%), Gaps = 40/390 (10%)
Query: 480 IQEMLETGVLKRLDSTTGFLSRLFLVP----KGNGGTRPVLNLKGLNQFLSPKKFSLINH 535
I+E+LE V+K ST +S FLV + G R V+N K +N+ +L N
Sbjct: 248 IKELLELKVIKPSKST--HMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNK 305
Query: 536 FRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAF 595
+ + ++ S D + V + Q A + +PFGL AP F
Sbjct: 306 DELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIF 365
Query: 596 ASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAV-SILGSLGWIVNLQKSS 654
+ S VY+DD L+ + R L + LG I++ +K+
Sbjct: 366 PK--TYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQ 423
Query: 655 LSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTL--LASKTWNLDSARSLLGYLSF 712
L + FLG+ D + +IL + + + + LG L++
Sbjct: 424 LFKEKI-NFLGLEID---------QGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTY 473
Query: 713 ASFVIPMGRLHSRRIQRQASLLRLGAPHLTPINPAVLPKLEWWLNALPLSSPIFPRQVQH 772
AS IP +L S R Q+ L + + K++ L + P P +
Sbjct: 474 ASDYIP--KLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPND-KL 530
Query: 773 FISTDASDLGWGSQVDS---------SFLSGLWSREQQNWHINKKEMFAVHQALSLNLPL 823
I TDAS+ WG + + + SG + ++N+H N+KE+ AV + +
Sbjct: 531 VIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIY 590
Query: 824 LQSSVVMVQSDNQTVVSYL-------RRQG 846
L S ++++DN+ ++ R+QG
Sbjct: 591 LTPSRFLIRTDNKNFTHFVNINLKGDRKQG 620
>sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153)
GN=ORF V PE=3 SV=1
Length = 680
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 102/435 (23%), Positives = 171/435 (39%), Gaps = 51/435 (11%)
Query: 480 IQEMLETGVLKRLDSTTGFLSRLFLV----PKGNGGTRPVLNLKGLNQFLSPKKFSLINH 535
I+E+L+ V+K S + ++ FLV G G R V+N K +N+ ++L N
Sbjct: 267 IKELLDLKVIK--PSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNK 324
Query: 536 FRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQAF 595
+ + ++ S D ++ V + + A + +PFGL AP F
Sbjct: 325 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 384
Query: 596 ASLSNWVASLLRSRGMRVVVYLDDFLLV--NQDPRILEIQGKLAVSILGSLGWIVNLQKS 653
+ + R VY+DD ++ N++ +L + + + G I++ +K+
Sbjct: 385 QRHMDEAFRVFRK---FCCVYVDDIVVFSNNEEDHLLHVA--MILQKCNQHGIILSKKKA 439
Query: 654 SLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFA 713
L + FLG+ D + P+ L N L K + LG L++A
Sbjct: 440 QLFKKKI-NFLGLEIDEGTHK---PQGHILEHINKFPDTLEDKK----QLQRFLGILTYA 491
Query: 714 SFVIPMGRLHSRRIQRQASLLRLGAPHLTPINPAVLPKLEWWLNAL-PLSSPIFPRQVQH 772
S IP L R QA L T + + K++ L PL P+ ++
Sbjct: 492 SDYIP--NLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL-- 547
Query: 773 FISTDASDLGWG-------------SQVDSSFLSGLWSREQQNWHINKKEMFAVHQALSL 819
I TDASD WG +++ + SG + ++N+H N KE AV +
Sbjct: 548 IIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKK 607
Query: 820 NLPLLQSSVVMVQSDNQTVVSY--LRRQGGTKSLSLLSEVEKIFLLSQDWRIH--ILAQF 875
L ++++DN S+ L +G +K + Q W H +
Sbjct: 608 FSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIR--------WQAWLSHYSFDVEH 659
Query: 876 IPGAYNSVADSLSRS 890
I G N AD LSR
Sbjct: 660 IKGTDNHFADFLSRE 674
>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412
OS=Drosophila melanogaster GN=POL PE=4 SV=1
Length = 1237
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 186/435 (42%), Gaps = 59/435 (13%)
Query: 480 IQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGT------RPVLNLKGLNQFLSPKKFSLI 533
+Q++++ +++ S + + S L LVPK + R V++ + +N+ L KF L
Sbjct: 334 VQKLIKDKIVE--PSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLP 391
Query: 534 NHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLPFGLATAPQ 593
I L + Y +DL + + + + + S + T LPFGL AP
Sbjct: 392 RIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPN 451
Query: 594 AFASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPR-----ILEIQGKLAVSILGSLGWIV 648
+F + S + + +Y+DD +++ + + E+ GK L +
Sbjct: 452 SFQRMMTIAFSGIEPS--QAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLK-----L 504
Query: 649 NLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLG 708
+ +K S V FLG D+ LP+DK+ ++++ + DSAR +
Sbjct: 505 HPEKCSFFMHEV-TFLG---HKCTDKGILPDDKKY---DVIQNYPVPH--DADSARRFVA 555
Query: 709 YLSFASFVIPMGRLHSRRIQRQASLLRLGAPH--LTPINPAVLPKLEWWLNALPLSSPIF 766
+ ++ I +SR I R L + P A + +N L P F
Sbjct: 556 FCNYYRRFIKNFADYSRHITR---LCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDF 612
Query: 767 PRQVQHFISTDASDLGWGS---------QVDSSFLSGLWSREQQNWHINKKEMFAVHQAL 817
++ I+TDAS G+ Q+ ++ S +++ + N ++E+ A+H A+
Sbjct: 613 SKEF--CITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAI 670
Query: 818 SLNLPLLQSSVVMVQSDNQTVVSYLRRQGGTKSLSLL---SEVEKIFLLSQDWRIHILAQ 874
P + V++D++ ++YL S++ S++ +I L +++ + +
Sbjct: 671 IHFRPYIYGKHFTVKTDHRP-LTYL--------FSMVNPSSKLTRIRLELEEYNFTV--E 719
Query: 875 FIPGAYNSVADSLSR 889
++ G N VAD+LSR
Sbjct: 720 YLKGKDNHVADALSR 734
>sp|P19199|POL_COYMV Polyprotein P3 OS=Commelina yellow mottle virus PE=3 SV=2
Length = 1886
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 93/458 (20%), Positives = 178/458 (38%), Gaps = 60/458 (13%)
Query: 465 LQHLATPVSSAMSLHIQEMLETGVLKRLDS---TTGFLSRL------FLVPKGNGGTRPV 515
++H+ AM+ I +L+ V++ +S +T F+ R + G R V
Sbjct: 1407 IKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMV 1466
Query: 516 LNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYN 575
N K LN+ ++SL I S + + DL ++ V ++ + A
Sbjct: 1467 FNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAG 1526
Query: 576 GDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGK 635
+ +PFGL AP F + ++ + + VY+DD L+ ++
Sbjct: 1527 NKLYEWLVMPFGLKNAPAIFQRKMD---NVFKGTEKFIAVYIDDILVFSETAEQHSQHLY 1583
Query: 636 LAVSILGSLGWIVNLQKSSLSPAPVLQFLG-------IMWDPH-LDRMWLPEDKQLTLGN 687
+ + G I++ K + P + FLG I PH + ++ D++L
Sbjct: 1584 TMLQLCKENGLILSPTKMKIG-TPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATP- 1641
Query: 688 ILRTLLASKTWNLDSARSLLGYLSFA-SFVIPMGRLHSRRIQRQASLLRLGAPHLTPINP 746
+ RS LG LS+A +++ +G+L Q+ A G + P
Sbjct: 1642 -------------EGMRSWLGILSYARNYIQDIGKLVQPLRQKMAP---TGDKRMNPETW 1685
Query: 747 AVLPKLEWWLNALP-LSSPIFPRQVQHFISTDASDLGWGSQVD--------------SSF 791
++ +++ + LP L P P+ I TD GWG+ ++
Sbjct: 1686 KMVRQIKEKVKNLPDLQLP--PKDSFIIIETDGCMTGWGAVCKWKMSKHDPRSTERICAY 1743
Query: 792 LSGLWSREQQNWHINKKEMFAVHQALSLNLPLLQSSVVMVQSDNQTVVSYLRRQGGTKSL 851
SG ++ + I+ + A+H + L ++++SD + ++ + + K
Sbjct: 1744 ASGSFNPIKST--IDAEIQAAIHGLDKFKIYYLDKKELIIRSDCEAIIKFYNKTNENKPS 1801
Query: 852 SLLSEVEKIFLLSQDWRIHILAQFIPGAYNSVADSLSR 889
+ FL I + + I G +N +AD+LSR
Sbjct: 1802 RVRWLTFSDFLTG--LGITVTFEHIDGKHNGLADALSR 1837
>sp|Q0R5R2|POL_HTL32 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain
2026ND) GN=gag-pro-pol PE=3 SV=3
Length = 1440
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 21/229 (9%)
Query: 502 LFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVP 561
+F V K NG R + +L+ N + S Q ++ +IDL+ A+F +P
Sbjct: 609 IFPVKKPNGKWRFIHDLRATNSVTRDLASPSPGPPDLTSLPQGLPHLRTIDLTDAFFQIP 668
Query: 562 IKTTHQRFLALSY-------NGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSR--GMR 612
+ T Q + A + G + LP G +P F + + + +R
Sbjct: 669 LPTIFQPYFAFTLPQPNNYGPGTRYSWRVLPQGFKNSPTLFEQQLSHILTPVRKTFPNSL 728
Query: 613 VVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHL 672
++ Y+DD LL + P L + L G ++ +K+ +P P+ FLG +
Sbjct: 729 IIQYMDDILLASPAPGELAALTDKVTNALTKEGLPLSPEKTQATPGPI-HFLGQVI---- 783
Query: 673 DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGR 721
+ L ++ TW+L +S+LG L + S P+ R
Sbjct: 784 -------SQDCITYETLPSINVKSTWSLAELQSMLGELQWVSKGTPVLR 825
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
Length = 1432
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
Query: 474 SAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGT-RPVLNLKGLNQFLSPKKFSL 532
A+ ++E+L+ G + R F + +F++ K G R +++ + LN+ + +
Sbjct: 567 KALKEIVEELLKDGKISRTPWDNPFNTPVFVIKKKGGSKWRMLMDFRALNKVTNKGQEFQ 626
Query: 533 INHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALS------------YNGDVLA 580
I P +Q+ +++ +ID+ AYF +P+ +++ A S Y+ +V
Sbjct: 627 IG-LPYPPGIQQCEHITAIDIKDAYFTIPLDENFRQYTAFSVVPVNREGPLERYHWNV-- 683
Query: 581 MTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVV--YLDDFLLVNQDP 627
LP G +P + + + + + ++ R +V+ Y+DD L+ + P
Sbjct: 684 ---LPQGWVCSPAIYQTTTQEIIAEIKDRFPDIVLYQYMDDLLIGSDRP 729
>sp|P0C211|POL_HTL1L Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Melanesia mel5 subtype C) GN=gag-pro-pol PE=3 SV=2
Length = 1462
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 115/281 (40%), Gaps = 40/281 (14%)
Query: 458 PLVP--LCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSR-LFLVPKGNGGTRP 514
PL P L +LQHL +++ LE G ++ TG + +F V K NG R
Sbjct: 597 PLNPERLQALQHL-----------VRKALEAG---HIEPYTGPGNNPVFPVKKANGTWRF 642
Query: 515 VLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSY 574
+ +L+ N S + S ++ +IDL A+F +P+ Q + A +
Sbjct: 643 IHDLRATNSLTVDLSSSSPGPPDLSSLPTTLAHLQTIDLKDAFFQIPLPKQFQPYFAFTV 702
Query: 575 -------NGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVV--YLDDFLLVNQ 625
G A LP G +P F + +R + V+ Y+DD LL +
Sbjct: 703 PQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLASILQPIRQAFPQCVILQYMDDILLASP 762
Query: 626 DPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTL 685
P L+ + ++ L S G V+ K+ +P ++FLG + P +T
Sbjct: 763 SPEDLQQLSEATMASLISHGLPVSQDKTQQTPG-TIKFLGQIISP----------NHITY 811
Query: 686 GNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGR--LHS 724
+ + S+ W L ++LLG + + S P R LHS
Sbjct: 812 DAVPTVPIRSR-WALPELQALLGEIQWVSKGTPTLRQPLHS 851
>sp|Q4U0X6|POL_HTL3P Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain
Pyl43) GN=gag-pro-pol PE=3 SV=4
Length = 1440
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 21/229 (9%)
Query: 502 LFLVPKGNGGTRPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVP 561
+F V K NG R + +L+ N + S Q ++ +IDL+ A+F +P
Sbjct: 609 IFPVKKPNGKWRFIHDLRATNSLTRDLASPSPGPPDLTSLPQDLPHLRTIDLTDAFFQIP 668
Query: 562 IKTTHQRFLALSY-------NGDVLAMTCLPFGLATAPQAFA-SLSNWVASLLRSRGMRV 613
+ Q + A + G + LP G +P F LS+ +A + ++ +
Sbjct: 669 LPAVFQPYFAFTLPQPNNHGPGTRYSWRVLPQGFKNSPTLFEQQLSHILAPVRKAFPNSL 728
Query: 614 VV-YLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHL 672
++ Y+DD LL + R L + L G ++L+K+ +P + FLG + P
Sbjct: 729 IIQYMDDILLASPALRELTALTDKVTNALTKEGLPMSLEKTQATPGSI-HFLGQVISP-- 785
Query: 673 DRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGR 721
L ++ W+L +S+LG L + S P+ R
Sbjct: 786 ---------DCITYETLPSIHVKSIWSLAELQSMLGELQWVSKGTPVLR 825
>sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans
GN=K02A2.6 PE=2 SV=1
Length = 1268
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 95/231 (41%), Gaps = 25/231 (10%)
Query: 450 AIPFSAKPPLVPLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGN 509
A+P + VP SL+ + T ++ +QEM GV+ + + + KG
Sbjct: 438 AVPVFKRARPVPYGSLEAVETELN-----RLQEM---GVIVPITYAKWAAPIVVIKKKGT 489
Query: 510 GGTRPVLNLK--GLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQ 567
G R + K GLN L + L I S L KG IDL AY V + Q
Sbjct: 490 GKIRVCADFKCSGLNAALKDEFHPLPTSEDIFSRL-KGTVYSQIDLKDAYLQVELDEEAQ 548
Query: 568 RFLALSYNGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVVYLDDFLL----V 623
+ ++ + + + FGL AP +F + + + S L V VY DD ++ +
Sbjct: 549 KLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTG----VAVYWDDIIISASSI 604
Query: 624 NQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDR 674
+ +IL + G+ V+ +K + + V FLG + D H R
Sbjct: 605 EEHEKIL----RELFERFKEYGFRVSAEKCAFAQKQVT-FLGFV-DEHGRR 649
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 128/309 (41%), Gaps = 33/309 (10%)
Query: 450 AIPFSAKPPL-VPLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKG 508
+P KP + P L A++ ++M + G + ++ + + +F + K
Sbjct: 599 TVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKDMEKEGKILKIGPENPYNTPVFAIKKK 658
Query: 509 NGGT-RPVLNLKGLNQFLSPKKFSLIN-HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTH 566
+ R ++N + LN+ + F + P+ L+K + +D+ AYF VP+
Sbjct: 659 DSTKWRKLVNFRELNK--RTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDF 716
Query: 567 QRFLAL---SYNGDV----LAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVV--YL 617
+++ A S N + LP G +P F S + R++ +V+ Y+
Sbjct: 717 RKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTKNPEIVIYQYM 776
Query: 618 DDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWL 677
DD L V D I + + K+ L W P ++G ++ H D+ W
Sbjct: 777 DD-LYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMG--YELHPDK-WT 832
Query: 678 PEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLG 737
+ QL ++W ++ + L+G L++AS + P ++++ LLR G
Sbjct: 833 VQPIQLP---------DKESWTVNDIQKLVGKLNWASQIYP-----GIKVKQLCKLLR-G 877
Query: 738 APHLTPINP 746
A LT I P
Sbjct: 878 AKALTDIVP 886
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 116/265 (43%), Gaps = 34/265 (12%)
Query: 471 PVSSAMSLHIQEMLET----GVLKRLDSTTGFLSRLFLVPKGNGGT-RPVLNLKGLNQFL 525
P+S + +QE+ +T G L R+ + + +F + K + R +++ + LN+
Sbjct: 639 PLSKEKIIALQEICKTLEEEGKLSRVGGDNAYNTPVFCIRKKDKSQWRMLVDFRELNK-A 697
Query: 526 SPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSY-------NGDV 578
+ F + P+ L+K + ID+ AY+ +P+ +++ A + G
Sbjct: 698 TQDFFEVQLGIPHPAGLKKMKQITIIDVGDAYYSIPLDPEFRKYTAFTIPTVNNEGPGIR 757
Query: 579 LAMTCLPFGLATAPQAFASLSNWVASLLRS--RGMRVVVYLDDFLLVNQD--PRILEIQG 634
CLP G +P F + ++ + ++ + + +V Y+DD + +Q+ P+
Sbjct: 758 YQFNCLPQGWKGSPTIFQNTASKILEEIKKELKQLTIVQYMDDLWVGSQEEGPK----HD 813
Query: 635 KLAVSILGSL-GWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLL 693
+L ++ L W + + + P +++G PH + L +I L
Sbjct: 814 QLVQTLRNRLQEWGLETPEKKVQREPPFEWMGYKLWPH----------KWKLQSI--ELE 861
Query: 694 ASKTWNLDSARSLLGYLSFASFVIP 718
+ W ++ + L+G L++A+ + P
Sbjct: 862 KKEQWTVNDLQKLVGKLNWAAQLYP 886
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 124/308 (40%), Gaps = 31/308 (10%)
Query: 450 AIPFSAKPPLV-PLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKG 508
+P KP + P L A++ EM E G + R+ + + +F + K
Sbjct: 591 TVPVKLKPGMDGPKIKQWPLTEEKIKALTQICAEMEEEGKISRVGPENPYNTPVFAIKKK 650
Query: 509 NGGT-RPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQ 567
+ R +++ + LN+ + + + P+ L+K + +D+ AYF VP+ +
Sbjct: 651 DSTKWRKLVDFRELNK-RTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLYEDFR 709
Query: 568 RFLAL---SYNGDV----LAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVV--YLD 618
++ A S N + LP G +P F + R R +V+ Y+D
Sbjct: 710 KYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILKPFRERNPEIVIYQYMD 769
Query: 619 DFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLP 678
D L V D I + + K+ L W P FL + ++ H D+ W
Sbjct: 770 D-LYVGSDLEIEQHRRKIKELREHLLKWGFTTPDKKHQKEP--PFLWMGYELHPDK-WTV 825
Query: 679 EDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGA 738
+ QL + W ++ + L+G L++AS + P ++++ LL+ GA
Sbjct: 826 QPIQLP---------EKEDWTVNDIQKLVGKLNWASQIYP-----GIKVKQLCKLLK-GA 870
Query: 739 PHLTPINP 746
LT I P
Sbjct: 871 KALTDIVP 878
>sp|A1Z651|POL_XMRV6 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62)
GN=gag-pol PE=1 SV=1
Length = 1733
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 118/276 (42%), Gaps = 29/276 (10%)
Query: 426 LRRFVDAWIRLGA------PAPLVRIVSGYAIPFSAKPPLVPLCSLQHLATPVSSAMSLH 479
L F AW G APL+ + + P S K P+ L + H
Sbjct: 683 LSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIK--QYPMSQEARLG------IKPH 734
Query: 480 IQEMLETGVLKRLDSTTGFLSRLFLVPK-GNGGTRPVLNLKGLNQFLSPKKFSLINHFRI 538
IQ +L+ G+L + + + + L V K G RPV +L+ +N+ + ++ N + +
Sbjct: 735 IQRLLDQGIL--VPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNL 792
Query: 539 PSFLQKG-DYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAM------TCLPFGLATA 591
S L + +DL A+F + + T Q A + + + T LP G +
Sbjct: 793 LSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNS 852
Query: 592 PQAF-ASLSNWVASL-LRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVN 649
P F +L +A ++ + ++ Y+DD LL + + + + LG+LG+ +
Sbjct: 853 PTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGNLGYRAS 912
Query: 650 LQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTL 685
+K+ + V ++LG + + WL E ++ T+
Sbjct: 913 AKKAQICQKQV-KYLGYLLKE--GQRWLTEARKETV 945
>sp|Q2F7J3|POL_XMRV3 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35)
GN=gag-pol PE=1 SV=1
Length = 1733
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 118/276 (42%), Gaps = 29/276 (10%)
Query: 426 LRRFVDAWIRLGA------PAPLVRIVSGYAIPFSAKPPLVPLCSLQHLATPVSSAMSLH 479
L F AW G APL+ + + P S K P+ L + H
Sbjct: 683 LSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIK--QYPMSQEARLG------IKPH 734
Query: 480 IQEMLETGVLKRLDSTTGFLSRLFLVPK-GNGGTRPVLNLKGLNQFLSPKKFSLINHFRI 538
IQ +L+ G+L + + + + L V K G RPV +L+ +N+ + ++ N + +
Sbjct: 735 IQRLLDQGIL--VPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNL 792
Query: 539 PSFLQKG-DYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAM------TCLPFGLATA 591
S L + +DL A+F + + T Q A + + + T LP G +
Sbjct: 793 LSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNS 852
Query: 592 PQAF-ASLSNWVASL-LRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVN 649
P F +L +A ++ + ++ Y+DD LL + + + + LG+LG+ +
Sbjct: 853 PTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGNLGYRAS 912
Query: 650 LQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTL 685
+K+ + V ++LG + + WL E ++ T+
Sbjct: 913 AKKAQICQKQV-KYLGYLLKE--GQRWLTEARKETV 945
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 28/217 (12%)
Query: 539 PSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLAL---SYNGDV----LAMTCLPFGLATA 591
P+ L+K + +D+ AYF VP+ +++ A S N + LP G +
Sbjct: 680 PAGLKKKKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGS 739
Query: 592 PQAFASLSNWVASLLRSRGMRVVV--YLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVN 649
P F S + + R++ +++ Y+DD L V D I + + K+ L W
Sbjct: 740 PSIFQSSTTKILEPFRAQNPEIIIYQYMDD-LYVGSDLEIGQHRAKIEELREHLLKWGFT 798
Query: 650 LQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGY 709
P ++G ++ H D+ W + QL +W ++ + L+G
Sbjct: 799 TPDKKHQKEPPFLWMG--YELHPDK-WTVQPIQLP---------EKDSWTVNDIQKLVGK 846
Query: 710 LSFASFVIPMGRLHSRRIQRQASLLRLGAPHLTPINP 746
L++AS + P ++++ LLR GA LT I P
Sbjct: 847 LNWASQIYP-----GIKVRQLCKLLR-GAKALTDIVP 877
>sp|Q2F7J0|POL_XMRV4 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42)
GN=gag-pol PE=3 SV=1
Length = 1733
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 118/276 (42%), Gaps = 29/276 (10%)
Query: 426 LRRFVDAWIRLGA------PAPLVRIVSGYAIPFSAKPPLVPLCSLQHLATPVSSAMSLH 479
L F AW G APL+ + + P S K P+ L + H
Sbjct: 683 LSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIK--QYPMSQEARLG------IKPH 734
Query: 480 IQEMLETGVLKRLDSTTGFLSRLFLVPK-GNGGTRPVLNLKGLNQFLSPKKFSLINHFRI 538
IQ +L+ G+L + + + + L V K G RPV +L+ +N+ + ++ N + +
Sbjct: 735 IQRLLDQGIL--VPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNL 792
Query: 539 PSFLQKG-DYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAM------TCLPFGLATA 591
S L + +DL A+F + + T Q A + + + T LP G +
Sbjct: 793 LSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNS 852
Query: 592 PQAF-ASLSNWVASL-LRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLGWIVN 649
P F +L +A ++ + ++ Y+DD LL + + + + LG+LG+ +
Sbjct: 853 PTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGNLGYRAS 912
Query: 650 LQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTL 685
+K+ + V ++LG + + WL E ++ T+
Sbjct: 913 AKKAQICQKQV-KYLGYLLKE--GQRWLTEARKETV 945
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 33/308 (10%)
Query: 451 IPFSAKPPL-VPLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGN 509
+P KP + P L A++ EM + G + R+ + + +F + K +
Sbjct: 595 VPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYSTPIFAIKKKD 654
Query: 510 GGT-RPVLNLKGLNQFLSPKKFSLIN-HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQ 567
R +++ + LN+ + F + P+ L+K + +D+ AYF VP+ +
Sbjct: 655 STKWRKLVDFRELNK--RTQDFWEVQLGIPHPAGLKKKKSVSVLDVGDAYFSVPLDKEFR 712
Query: 568 RFLAL---SYNGDV----LAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVV--YLD 618
++ A S N + LP G +P F S + + R + +V+ Y+D
Sbjct: 713 KYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILAPFREQNPEMVIYQYMD 772
Query: 619 DFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLP 678
D L V D I + + K+ L W P ++G ++ H D+ W
Sbjct: 773 D-LYVGSDLEIGQHRAKIEELRAHLLKWGFTTPDKKHQKEPPFLWMG--YELHPDK-WTV 828
Query: 679 EDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGA 738
+ +L +W ++ + L+G L++AS + P + ++++ LLR GA
Sbjct: 829 QTVKLP---------EKDSWTVNDIQKLVGKLNWASQIYP-----NIKVKQLCKLLR-GA 873
Query: 739 PHLTPINP 746
LT I P
Sbjct: 874 KALTDIIP 881
>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1035
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 472 VSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPK------GNGGTRPVLNLKGLNQFL 525
VS ++ ++++L+ G+++ S + + S ++V K GN R V++ + LN+
Sbjct: 193 VSDFVNNEVKQLLKDGIIR--PSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKT 250
Query: 526 SPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSYNGDVLAMTCLP 585
P ++ + + I + L K + ++DL Y + + + + S NG LP
Sbjct: 251 IPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLP 310
Query: 586 FGLATAPQAFASLSNWVASLLRSR-GMRVVVYLDDFLLVNQD 626
FGL A F + +LR + G VY+DD ++ +++
Sbjct: 311 FGLRNASSIF---QRALDDVLREQIGKICYVYVDDVIIFSEN 349
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 124/305 (40%), Gaps = 31/305 (10%)
Query: 451 IPFSAKPPL-VPLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGN 509
+P KP + P L A++ +EM E G + ++ + + +F + K +
Sbjct: 593 VPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPIFAIKKKD 652
Query: 510 GGT-RPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQR 568
R +++ + LN+ + + + P+ L+K + +D+ AYF VP+ ++
Sbjct: 653 STKWRKLVDFRELNK-RTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRK 711
Query: 569 FLAL---SYNGDV----LAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVV--YLDD 619
+ A S N + LP G +P F S + R+ +V+ Y+DD
Sbjct: 712 YTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTRILEPFRANNPEMVIYQYMDD 771
Query: 620 FLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPE 679
L V D I + + K+ L W P ++G ++ H D+ W +
Sbjct: 772 -LYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMG--YELHPDK-WTVQ 827
Query: 680 DKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGAP 739
QL ++W ++ + L+G L++AS + P ++ LLR GA
Sbjct: 828 PIQLP---------DKESWTVNDIQKLVGKLNWASQIYP-----GIKVTHLCKLLR-GAK 872
Query: 740 HLTPI 744
LT I
Sbjct: 873 ALTDI 877
>sp|P14078|POL_HTL1C Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Caribbea HS-35 subtype A) GN=gag-pro-pol PE=3 SV=3
Length = 1462
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 116/281 (41%), Gaps = 40/281 (14%)
Query: 458 PLVP--LCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSR-LFLVPKGNGGTRP 514
PL P L +LQHL +++ LE G ++ TG + +F V K NG R
Sbjct: 597 PLNPERLQALQHL-----------VRKALEAG---HIEPYTGPGNNPVFPVKKANGTWRF 642
Query: 515 VLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSY 574
+ +L+ N S + S ++ +IDL A+F +P+ Q + A +
Sbjct: 643 IHDLRATNSLTIDLSSSSPGPPDLSSLPTTLAHLQTIDLKDAFFQIPLPKQFQPYFAFTV 702
Query: 575 -------NGDVLAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVV--YLDDFLLVNQ 625
G A LP G +P F + +R + + Y+DD LL +
Sbjct: 703 PQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASP 762
Query: 626 DPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTL 685
L++ + ++ L S G V+ K+ +P ++FLG + P+ LT
Sbjct: 763 SHADLQLLSEATMASLISHGLPVSENKTQQTPG-TIKFLGQIISPN----------HLTY 811
Query: 686 GNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGR--LHS 724
+ + + S+ W L ++LLG + + S P R LHS
Sbjct: 812 DAVPKVPIRSR-WALPELQALLGEIQWVSKGTPTLRQPLHS 851
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/304 (19%), Positives = 123/304 (40%), Gaps = 46/304 (15%)
Query: 440 APLV-RIVSGYAIPFSAKPPLVPL---------CSLQH-LATPVSSAMSLHIQEMLETGV 488
AP V R+V G S K P+ P+ C Q L+ A+ ++ + G
Sbjct: 608 APAVPRLVMG---QLSEKIPVTPVKLKEGARGPCVRQWPLSKEKIEALQEICSQLEQEGK 664
Query: 489 LKRLDSTTGFLSRLFLVPKGNGGT-RPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDY 547
+ R+ + + +F + K + R +++ + LN+ + F + P+ L+K
Sbjct: 665 ISRVGGENAYNTPIFCIKKKDKSQWRMLVDFRELNK-ATQDFFEVQLGIPHPAGLRKMRQ 723
Query: 548 MISIDLSQAYFHVPIKTTHQRFLALSY-------NGDVLAMTCLPFGLATAPQAFASLSN 600
+ +D+ AY+ +P+ +++ A + G CLP G +P F + +
Sbjct: 724 ITVLDVGDAYYSIPLDPNFRKYTAFTIPTVNNQGPGIRYQFNCLPQGWKGSPTIFQNTAA 783
Query: 601 WVASLLRSR--GMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSL-GWIVNLQKSSLSP 657
+ ++ + +V Y+DD + +Q+ KL + L W + + +
Sbjct: 784 SILEEIKRNLPALTIVQYMDDLWVGSQENE--HTHDKLVEQLRTKLQAWGLETPEKKMQK 841
Query: 658 APVLQFLGIMWDPH---LDRMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFAS 714
P +++G PH L R+ L E + W ++ + L+G L++A+
Sbjct: 842 EPPYEWMGYKLWPHKWELSRIQLEEKDE---------------WTVNDIQKLVGKLNWAA 886
Query: 715 FVIP 718
+ P
Sbjct: 887 QLYP 890
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 116/284 (40%), Gaps = 32/284 (11%)
Query: 474 SAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGT-RPVLNLKGLNQFLSPKKFSL 532
A++ E+ E G + R+ + + +F + K + R +++ + LN+ + F
Sbjct: 616 KALTQICAELEEEGKISRIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNK--RTQDFWE 673
Query: 533 IN-HFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLAL---SYNGDV----LAMTCL 584
+ P+ L+K + +D+ AYF VP+ +++ A S N + L
Sbjct: 674 VQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLYEDFRKYTAFTIPSINNETPGIRYQYNVL 733
Query: 585 PFGLATAPQAFASLSNWVASLLRSRGMRVVV--YLDDFLLVNQDPRILEIQGKLAVSILG 642
P G +P F + R R +V+ Y+DD L V D I + + K+
Sbjct: 734 PQGWKGSPAIFQCSMTKILKPFRERNPEIVIYQYMDD-LYVGSDLEIEQHRRKIKELREH 792
Query: 643 SLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDS 702
L W P FL + ++ H D+ W + QL + W ++
Sbjct: 793 LLKWGFYTPDKKHQKEP--PFLWMGYELHPDK-WTVQPIQLP---------EKEDWTVND 840
Query: 703 ARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGAPHLTPINP 746
+ L+G L++AS + P +I+ L+R GA LT I P
Sbjct: 841 IQKLVGKLNWASQIYP-----GIKIKELCKLIR-GAKALTDIVP 878
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 124/308 (40%), Gaps = 31/308 (10%)
Query: 450 AIPFSAKPPL-VPLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKG 508
+P KP + P L A++ EM + G + ++ + + +F + K
Sbjct: 589 TVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKK 648
Query: 509 NGGT-RPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQ 567
+ R +++ + LN+ + + + P+ L+K + +D+ AYF VP+ +
Sbjct: 649 DSTKWRKLVDFRELNK-RTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFR 707
Query: 568 RFLAL---SYNGDV----LAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVV--YLD 618
++ A S N + LP G +P F + R++ +V+ Y+D
Sbjct: 708 KYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAKNPEIVIYQYMD 767
Query: 619 DFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLP 678
D L V D I + + K+ L W P FL + ++ H D+ W
Sbjct: 768 D-LYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEP--PFLWMGYELHPDK-WTV 823
Query: 679 EDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASLLRLGA 738
+ QL +W ++ + L+G L++AS + P RI+ LLR GA
Sbjct: 824 QPIQLP---------EKSSWTVNDIQKLVGKLNWASQIYP-----GIRIKHLCRLLR-GA 868
Query: 739 PHLTPINP 746
LT + P
Sbjct: 869 KALTDVVP 876
>sp|P17283|POL_SIVCZ Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate CPZ
GAB1) GN=gag-pol PE=3 SV=2
Length = 1384
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 126/313 (40%), Gaps = 31/313 (9%)
Query: 445 IVSGYAIPFSAKPPL-VPLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLF 503
I S +P KP + P L+ A++ QEM + G + ++ + + +F
Sbjct: 538 ISSIETVPVKLKPGMDGPKVKQWPLSAEKIKALTEICQEMEKEGKISKIGPENPYNTPIF 597
Query: 504 LVPKGNGGT-RPVLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPI 562
+ K + R +++ + LN+ + + + P+ L+K + +D+ AYF P+
Sbjct: 598 AIKKKDSTKWRKLVDFRELNK-RTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSCPL 656
Query: 563 KTTHQRFLAL---SYNGDV----LAMTCLPFGLATAPQAFASLSNWVASLLRSRGMRVVV 615
+++ A S N + LP G +P F S + R + + +
Sbjct: 657 DKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFREKNPDITI 716
Query: 616 Y--LDDFLLVNQDPRILEIQGKLAVSILGSLGWIVNLQKSSLSPAPVLQFLGIMWDPHLD 673
Y +DD L V D I + + K+ L W P FL + ++ H D
Sbjct: 717 YQYMDD-LYVGSDLEIDQHRKKVEELRQHLLKWGFTTPDKKHQKEP--PFLWMGYELHPD 773
Query: 674 RMWLPEDKQLTLGNILRTLLASKTWNLDSARSLLGYLSFASFVIPMGRLHSRRIQRQASL 733
+ W + QL + W ++ + L+G L++AS + P +I++ L
Sbjct: 774 K-WTVQPIQLP---------EKEVWTVNDIQKLIGKLNWASQIYP-----GIKIKQLCKL 818
Query: 734 LRLGAPHLTPINP 746
+R G LT + P
Sbjct: 819 IR-GTKKLTDVVP 830
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,684,801
Number of Sequences: 539616
Number of extensions: 17395177
Number of successful extensions: 63188
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 997
Number of HSP's that attempted gapping in prelim test: 57859
Number of HSP's gapped (non-prelim): 4459
length of query: 1097
length of database: 191,569,459
effective HSP length: 128
effective length of query: 969
effective length of database: 122,498,611
effective search space: 118701154059
effective search space used: 118701154059
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)