RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14859
         (1097 letters)



>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human
           immunodeficiency virus type 1 [TaxId: 11676]}
          Length = 424

 Score = 83.1 bits (205), Expect = 4e-17
 Identities = 60/327 (18%), Positives = 117/327 (35%), Gaps = 32/327 (9%)

Query: 475 AMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGT-RPVLNLKGLNQFLSPKKFSLI 533
           A+     EM + G + ++     + + +F + K +    R +++ + LN+  +   + + 
Sbjct: 29  ALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNK-RTQDFWEVQ 87

Query: 534 NHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLAL-------SYNGDVLAMTCLPF 586
                P+ L+K   +  +D+  AYF VP+    +++ A           G       LP 
Sbjct: 88  LGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQ 147

Query: 587 GLATAPQAFASLSNWV-ASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSLG 645
           G   +P  F S    +     +     V+    D L V  D  I + + K+       L 
Sbjct: 148 GWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLR 207

Query: 646 WIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSARS 705
           W +          P   ++G    P  D+  +              L    +W ++  + 
Sbjct: 208 WGLTTPDKKHQKEPPFLWMGYELHP--DKWTVQPIV----------LPEKDSWTVNDIQK 255

Query: 706 LLGYLSFASFVIPMGRLHSRRIQRQASLLRLGAPHLTPINPAVLPKLEWWLNALPLSSP- 764
           L+G L++AS + P       ++++ + LLR        I      +LE   N   L  P 
Sbjct: 256 LVGKLNWASQIYP-----GIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPV 310

Query: 765 --IFPRQVQHFI-STDASDLG-WGSQV 787
             ++    +  I        G W  Q+
Sbjct: 311 HGVYYDPSKDLIAEIQKQGQGQWTYQI 337


>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human
           immunodeficiency virus type 1 [TaxId: 11676]}
          Length = 216

 Score = 70.4 bits (172), Expect = 4e-14
 Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 13/191 (6%)

Query: 455 AKPPLVPLCSLQHLATPVSSAMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGTRP 514
              P V       L     +A+     EM + G + ++     + + +F + K +     
Sbjct: 16  MDGPKVAQ---WPLTAAKIAALVAICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWA 72

Query: 515 VLNLKGLNQFLSPKKFSLINHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQRFLALSY 574
            L         +   + +      P+ L+K   +  +D+  AYF VP+    +++ A + 
Sbjct: 73  KLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTI 132

Query: 575 -------NGDVLAMTCLPFGLATAPQAFASLSNWVASLL--RSRGMRVVVYLDDFLLVNQ 625
                   G       LP G   +P  F S    + +     +  + +  Y+DD L V  
Sbjct: 133 PSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILAPFKAANPDIVIYQYMDD-LYVGS 191

Query: 626 DPRILEIQGKL 636
           D  I   + K+
Sbjct: 192 DLAIGAHRTKI 202


>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human
           immunodeficiency virus type 2 [TaxId: 11709]}
          Length = 427

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 40/255 (15%), Positives = 93/255 (36%), Gaps = 26/255 (10%)

Query: 475 AMSLHIQEMLETGVLKRLDSTTGFLSRLFLVPKGNGGT-RPVLNLKGLNQFLSPKKFSLI 533
           A+    ++M + G L+    T  + +  F + K +    R +++ + LN+ ++     + 
Sbjct: 31  ALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNK-VTQDFTEIQ 89

Query: 534 NHFRIPSFLQKGDYMISIDLSQAYFHVPIKTTHQ-------RFLALSYNGDVLAMTCLPF 586
                P+ L K   +  +D+  AYF +P+    +         +  +  G       LP 
Sbjct: 90  LGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRPYTAFTLPSVNNAEPGKRYIYKVLPQ 149

Query: 587 GLATAPQAFASLSNWVASLLRSRGMRVVVYLDDFLLVNQDPRILEIQGKLAVSILGSL-- 644
           G   +P  F      V    R     V++      ++    R      ++ + +   L  
Sbjct: 150 GWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNG 209

Query: 645 -GWIVNLQKSSLSPAPVLQFLGIMWDPHLDRMWLPEDKQLTLGNILRTLLASKTWNLDSA 703
            G+    +K    P     +  + ++    +  L + +          L   + W ++  
Sbjct: 210 LGFSTPDEKFQKDP----PYHWMGYELWPTKWKLQKIQ----------LPQKEIWTVNDI 255

Query: 704 RSLLGYLSFASFVIP 718
           + L+G L++A+ + P
Sbjct: 256 QKLVGVLNWAAQLYP 270


>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon
            Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 282

 Score = 31.7 bits (72), Expect = 0.41
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 1026 ITTRGIVQPASRSVIAGWVKTALRGANIIASPGSMRSAVATFRYNSDLPLDSILRQGNWR 1085
            + T G V+P  + ++   +K A++   I  + G      A  ++    P       G   
Sbjct: 184  LGTTGFVEPWCKKLVETKLKIAMQYHRIAITTGRKAWLYARKKF----PEYQPFVFGVHI 239

Query: 1086 GG 1087
              
Sbjct: 240  DE 241


>d1vava_ b.29.1.18 (A:) Alginate lyase PA1167 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 222

 Score = 30.3 bits (68), Expect = 1.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 957 DPDHFQELDDFVVFW-PVFGSKTDSSSHLQSGWKIKENSSDP 997
             D+FQ   D + FW PV GS T +S   +S  +   +S  P
Sbjct: 29  RSDYFQRTADGIRFWVPVNGSHTRNSEFPRSELRETLSSGRP 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,916,479
Number of extensions: 179488
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 6
Length of query: 1097
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1002
Effective length of database: 1,103,246
Effective search space: 1105452492
Effective search space used: 1105452492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)