BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1486
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 101/141 (71%), Gaps = 1/141 (0%)
Query: 1 RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
RC P+SIRL+DN Q + G +P DGLKK Y+TK GF +++ AT+LFE
Sbjct: 412 RCAPASIRLMDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 471
Query: 60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFETS
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFETS 531
Query: 120 VPWDKTVLLCINVKKRLTREC 140
PWD+ V LC NVK+R+TREC
Sbjct: 532 APWDRVVDLCRNVKERITREC 552
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus
musculus GN=Agps PE=1 SV=1
Length = 645
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 100/144 (69%), Gaps = 1/144 (0%)
Query: 1 RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
RC P+SIRL+DN Q + G +P DGLKK Y+TK GF +++ AT+LFE
Sbjct: 399 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQISVATLLFE 458
Query: 60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD +YY IG+SFETS
Sbjct: 459 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFETS 518
Query: 120 VPWDKTVLLCINVKKRLTRECTGR 143
PWD+ + LC NVK+R+ REC R
Sbjct: 519 APWDRVIDLCRNVKERIRRECKER 542
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 1 RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
RC P+SIRL+DN Q + G +P DGLKK Y+TK GF +++ AT+LFE
Sbjct: 412 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 471
Query: 60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY IG+SFETS
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETS 531
Query: 120 VPWDKTVLLCINVKKRLTREC 140
PWD+ V LC NVK+R+ REC
Sbjct: 532 APWDRVVDLCRNVKERIRREC 552
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus
norvegicus GN=Agps PE=2 SV=1
Length = 644
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Query: 1 RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
RC P+SIRL+DN Q + G +P DG KK Y+TK GF +++ AT+LFE
Sbjct: 398 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGFKKFYITKFKGFDPNQISVATLLFE 457
Query: 60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
GD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY +G+SFETS
Sbjct: 458 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGESFETS 517
Query: 120 VPWDKTVLLCINVKKRLTRECTGR 143
PWD+ + LC NVK+R+ REC R
Sbjct: 518 APWDRVIDLCRNVKERIRRECKER 541
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster
GN=CG10253 PE=2 SV=1
Length = 631
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 99/143 (69%)
Query: 1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
RCQP+S+RL+DN Q GQ +P+ + + D +K+ YVT G +++CAAT+LFEG
Sbjct: 365 RCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMKQRYVTSWKGIDLNQICAATLLFEG 424
Query: 61 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSV 120
D +DV+ E IY IA+++ G PAG NG RGY+LT++IAYIRDF + +SFETSV
Sbjct: 425 DLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAESFETSV 484
Query: 121 PWDKTVLLCINVKKRLTRECTGR 143
PWD+ LLC +VK+R+ EC+ R
Sbjct: 485 PWDRCSLLCRSVKQRVVSECSKR 507
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans
GN=ads-1 PE=2 SV=1
Length = 597
Score = 135 bits (340), Expect = 9e-32, Method: Composition-based stats.
Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 3/151 (1%)
Query: 1 RCQPSSIRLVDNVQLKAGQFFR-PDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
RCQP+S+RL+DN Q GQ + + L + K+Y+T GF+ DE+CAAT ++E
Sbjct: 341 RCQPASLRLMDNDQFVMGQALKVASDSWWADLKSSVSKMYITSWKGFKVDEICAATCVYE 400
Query: 60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
G+ E+V +E+++ +A+++ G+ G NG+ GY LT+ IAY+RD ++ +G+SFETS
Sbjct: 401 GNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETS 460
Query: 120 VPWDKTVLLCINVKKRLTRECTGRWL--PVL 148
VPWDK + LC NVK+ + RE + + PVL
Sbjct: 461 VPWDKVLSLCRNVKELMKREAKAQGVTHPVL 491
>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum
GN=eapA PE=1 SV=1
Length = 611
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 4 PSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE 63
P+ IR+ D + + ++P G + T + K Y+ I F +C + + FEG +
Sbjct: 348 PTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 407
Query: 64 DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWD 123
V + ++ I + G + G+ Y + YIRDF D+ D ET+V +
Sbjct: 408 VVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYA 467
Query: 124 KTVLLCINVKKRLTRECTGRWLPVLV 149
L + K+ + + +P +
Sbjct: 468 NLQTLWKDAKQTFVKHFKDQGIPAWI 493
>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 613
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 51/135 (37%)
Query: 3 QPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDP 62
P ++RL D + D G + K Y+ + G+ ++ V FEG
Sbjct: 337 HPCTMRLYDEDDTRLSFAASTDSGLVSTFFSKCFKKYIATVKGWNLSKISLVVVGFEGTK 396
Query: 63 EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPW 122
++ + + +G G G Y + Y+RDFA + F D FETSV +
Sbjct: 397 AQTNCQRSELVGVFQAFGATCLGTKPGNTWQEKKYDLPYLRDFALAHNFWADVFETSVLY 456
Query: 123 DKTVLLCINVKKRLT 137
+ VKK
Sbjct: 457 TDAIHCWRAVKKSFA 471
>sp|Q13E22|MNME_RHOPS tRNA modification GTPase MnmE OS=Rhodopseudomonas palustris (strain
BisB5) GN=mnmE PE=3 SV=2
Length = 460
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 79 YGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 127
+GG A E + RG L +IA I DFA Y+ G++ S +T+L
Sbjct: 357 WGGNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLL 405
>sp|A6VI08|NIKR_METM7 Putative nickel-responsive regulator OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=MmarC7_1017 PE=3 SV=1
Length = 141
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 36 KKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYS 74
+KL V I D + C VL +GD D+K+ DK+ S
Sbjct: 83 EKLIVATIHMHLDHDHCMEVVLVKGDASDIKDLTDKLTS 121
>sp|Q1DFA7|GSA_MYXXD Glutamate-1-semialdehyde 2,1-aminomutase OS=Myxococcus xanthus
(strain DK 1622) GN=hemL PE=3 SV=1
Length = 431
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 23 PDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGG- 81
P PGYLE L +K V +L DE+ L G +++ + + ++AK GG
Sbjct: 217 PKPGYLEGLQALCQKHGVLLVL----DEVMTGFRLSRGGAQELYGLKPDLTTMAKVIGGG 272
Query: 82 IPAGESNGRRGYM 94
+P G GRR M
Sbjct: 273 MPMGAYGGRRDIM 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.144 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,590,957
Number of Sequences: 539616
Number of extensions: 2677328
Number of successful extensions: 4700
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4684
Number of HSP's gapped (non-prelim): 14
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)