Query psy1486
Match_columns 154
No_of_seqs 110 out of 279
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 22:36:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1233|consensus 100.0 2.6E-39 5.6E-44 277.1 5.9 150 1-150 367-517 (613)
2 PF02913 FAD-oxidase_C: FAD li 99.1 4.6E-11 9.9E-16 94.1 3.9 120 1-140 29-155 (248)
3 TIGR00387 glcD glycolate oxida 98.6 1.5E-07 3.2E-12 81.9 8.4 115 1-139 201-320 (413)
4 PRK11230 glycolate oxidase sub 98.3 5E-06 1.1E-10 74.4 10.1 112 1-136 258-374 (499)
5 PLN02805 D-lactate dehydrogena 98.2 1.3E-05 2.9E-10 72.7 11.1 112 1-137 335-452 (555)
6 COG3286 Uncharacterized protei 90.9 1.3 2.8E-05 35.6 7.1 86 54-139 39-135 (204)
7 PF09840 DUF2067: Uncharacteri 72.0 22 0.00047 28.3 7.1 87 53-139 35-132 (190)
8 KOG2872|consensus 57.6 17 0.00038 31.3 4.2 32 95-153 226-257 (359)
9 cd00248 Mth938-like Mth938-lik 44.9 27 0.00058 24.9 3.0 47 68-119 40-88 (109)
10 KOG4179|consensus 34.9 16 0.00034 33.1 0.5 28 104-132 510-539 (568)
11 COG1071 AcoA Pyruvate/2-oxoglu 30.1 1.3E+02 0.0027 26.4 5.3 74 58-140 228-323 (358)
12 COG2723 BglB Beta-glucosidase/ 28.4 43 0.00093 30.3 2.2 52 101-152 61-121 (460)
13 PRK12378 hypothetical protein; 24.2 1.4E+02 0.003 24.5 4.3 47 64-111 102-156 (235)
14 PF02662 FlpD: Methyl-viologen 23.2 82 0.0018 23.0 2.6 48 89-138 71-122 (124)
15 COG3915 Uncharacterized protei 22.9 63 0.0014 24.8 1.9 42 111-152 46-88 (155)
16 PF14257 DUF4349: Domain of un 22.2 95 0.0021 25.2 3.0 77 63-139 59-144 (262)
17 COG3010 NanE Putative N-acetyl 21.8 1.3E+02 0.0028 24.7 3.6 73 54-137 154-227 (229)
18 PF12738 PTCB-BRCT: twin BRCT 21.6 49 0.0011 20.5 1.0 27 52-84 2-28 (63)
19 PRK13511 6-phospho-beta-galact 20.9 74 0.0016 28.5 2.3 52 101-152 56-115 (469)
20 KOG0496|consensus 20.6 97 0.0021 29.3 3.0 63 63-125 142-209 (649)
No 1
>KOG1233|consensus
Probab=100.00 E-value=2.6e-39 Score=277.09 Aligned_cols=150 Identities=48% Similarity=0.897 Sum_probs=145.8
Q ss_pred CCCCceeEeechhhhhhcccCCCC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHh
Q psy1486 1 RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRY 79 (154)
Q Consensus 1 ~l~Pa~~RLsD~~Et~~~lal~~~-~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~ 79 (154)
||+|+++||+||+|+.||+||+|. .++++.+.+.++++|+++|||||.+++|.+++.|||+.++|+++++++++|+.++
T Consensus 367 RCqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfEGdre~V~qhE~~~y~iAekF 446 (613)
T KOG1233|consen 367 RCQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFEGDREEVDQHEERLYKIAEKF 446 (613)
T ss_pred hcCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheecccHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999998 6999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEE
Q psy1486 80 GGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVK 150 (154)
Q Consensus 80 GG~~~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v~ 150 (154)
+|+.+|+.+|+++|.++|.++|+||+.+.+|+++|+||||+||+++..||++|+++++++|+++|+...++
T Consensus 447 ~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKer~~rEck~~gv~~~~~ 517 (613)
T KOG1233|consen 447 HGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKERMKRECKAQGVTHPVL 517 (613)
T ss_pred CCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876543
No 2
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.12 E-value=4.6e-11 Score=94.10 Aligned_cols=120 Identities=25% Similarity=0.273 Sum_probs=92.2
Q ss_pred CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChH-HhHhHHH-HHHHHHHH
Q psy1486 1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE-DVKNNED-KIYSIAKR 78 (154)
Q Consensus 1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~-~V~~~~~-~~~~i~~~ 78 (154)
++.|+.++|+|+.++.......+. .......|++++.|+|+.+ .++.+.+ .+.+++++
T Consensus 29 g~~p~a~el~d~~~~~~~~~~~~~--------------------~~~~~~~~~llv~~~g~~~~~~~~~~~~~i~~~~~~ 88 (248)
T PF02913_consen 29 GIIPSAIELLDSAALKLALEHWGE--------------------PLPPEGGAVLLVEFEGSDEEAVEEQLEAEIEEICKK 88 (248)
T ss_dssp CSSCCECCCCHHHHHHHHHHSEEE--------------------TSSTTTSEEEEEECCCHHHCCHHHHHHHHHHHHHCT
T ss_pred CCCceEEeeeCHHHHHHHHhhcCC--------------------CccCCcccEEEEEECCCcHHHHHHHHHHHHHHHHhh
Confidence 468999999999998765432221 1223345899999999994 5666666 78888877
Q ss_pred hCCCC-----CCCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHH
Q psy1486 79 YGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 140 (154)
Q Consensus 79 ~GG~~-----~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~ 140 (154)
+|+.. -.+...+-|..-++..||+++...+.+...+++|+++||++++++++.+++.+.+..
T Consensus 89 ~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~~~~ 155 (248)
T PF02913_consen 89 YGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLREYG 155 (248)
T ss_dssp CTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHHHCT
T ss_pred cCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhhhcc
Confidence 77754 112335678877777789999999999999999999999999999999987777664
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=98.62 E-value=1.5e-07 Score=81.92 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=82.1
Q ss_pred CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhC
Q psy1486 1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYG 80 (154)
Q Consensus 1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~G 80 (154)
++.|+.++++|+.+...... +. ..+...+..+++++.|+|++++++.+.+++.++++++|
T Consensus 201 ~~~p~a~el~d~~~~~~~~~------------------~~--~~~~p~~~~~~l~v~~~g~~~~~~~~~~~~~~~~~~~~ 260 (413)
T TIGR00387 201 GIIPAGMEFLDNLSIKAVED------------------IS--GIGLPKDAGAILLVEIDGVHEAVERDEEKIEQICRKNG 260 (413)
T ss_pred CCCcEEEEccCHHHHHHHHH------------------hc--CCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHhCC
Confidence 46799999999987643110 00 01122234588999999999999999999999999998
Q ss_pred CCCC----C-CcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHH
Q psy1486 81 GIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE 139 (154)
Q Consensus 81 G~~~----G-~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~ 139 (154)
+... + +...+.|...++..|++++.. ...+ +.|+++||++++++++.+++.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~~~~~~~~~~~~ 320 (413)
T TIGR00387 261 AVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEALRGIADIARKY 320 (413)
T ss_pred CceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHHHHHHHHHHHHc
Confidence 7532 1 235567887777789998743 2222 3579999999999999997766543
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=98.30 E-value=5e-06 Score=74.40 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=76.3
Q ss_pred CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhC
Q psy1486 1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYG 80 (154)
Q Consensus 1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~G 80 (154)
++.|+.++++|+....... .++. .+...+..+++++.++|+++.++.+.+.+.++++++|
T Consensus 258 ~~~p~~~el~d~~~~~~~~------------------~~~~--~~~p~~~~~~ll~e~~g~~~~v~~~~~~l~~~~~~~g 317 (499)
T PRK11230 258 GIIPGGLEMMDNLSIRAAE------------------DFIH--AGYPVDAEAILLCELDGVESDVQEDCERVNDILLKAG 317 (499)
T ss_pred CCCcEEEEeeCHHHHHHHH------------------HhcC--CCCCCCcceEEEEEecCCchHHHHHHHHHHHHHHhcC
Confidence 3579999999988764210 0110 1111123478899999999999999999999999999
Q ss_pred CCCCC-----CcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHH
Q psy1486 81 GIPAG-----ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRL 136 (154)
Q Consensus 81 G~~~G-----~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al 136 (154)
+..+. ++..+.|..-+...|+++.. ..+++. .++++||++++++++.+++..
T Consensus 318 ~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l~~~~~~~~~~~ 374 (499)
T PRK11230 318 ATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRRELPGVLEGIARLS 374 (499)
T ss_pred CceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHHHHHHHHHHHHH
Confidence 75332 12334666533445888763 334444 499999999999999997744
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=98.22 E-value=1.3e-05 Score=72.67 Aligned_cols=112 Identities=18% Similarity=0.074 Sum_probs=74.8
Q ss_pred CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhC
Q psy1486 1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYG 80 (154)
Q Consensus 1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~G 80 (154)
++.|+.++++|+.+...-.. +. -.++. ..|++++.|+|++++++.+.+.+.+|++++|
T Consensus 335 g~~psa~ElmD~~~~~~~~~------------------~~--~~~~p--~~~~Ll~e~~g~~~~~~~~~~~~~~i~~~~g 392 (555)
T PLN02805 335 GIQVSRVELLDEVQIRAINM------------------AN--GKNLP--EAPTLMFEFIGTEAYAREQTLIVQKIASKHN 392 (555)
T ss_pred CCCcEEEEEECHHHHHHHHH------------------hc--CCCCC--cceEEEEEEecCcHHHHHHHHHHHHHHHhCC
Confidence 46899999999988753210 00 00111 2489999999999999999999999999999
Q ss_pred CC--CCCCcc---hhhhhhhhhhh-hhhhhhhhccccceeeeecccccCChHHHHHHHHHHHH
Q psy1486 81 GI--PAGESN---GRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 137 (154)
Q Consensus 81 G~--~~G~~~---g~~W~~~rF~~-pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~ 137 (154)
+. .+.+.+ .+.|. .|-.. +.+.. ...+....+.+++||||+++++++.+++.+.
T Consensus 393 ~~~~~~a~~~~e~~~lW~-~R~~~~~~~~~--~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~ 452 (555)
T PLN02805 393 GSDFVFAEEPEAKKELWK-IRKEALWACFA--MEPKYEAMITDVCVPLSHLAELISRSKKELD 452 (555)
T ss_pred CceEEEeCCHHHHHHHHH-HHHHHHHHHhh--cCCCCceeEEEEEEEHHHHHHHHHHHHHHHH
Confidence 84 222322 34566 34333 22221 1224444577999999999999999976654
No 6
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.85 E-value=1.3 Score=35.61 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=61.4
Q ss_pred EEEEEeCChHHhHhHHHHHHHHHHHhCCCCCCCcch-----hhhhhhhhhh--hhhhhhhhcccccee----eeeccccc
Q psy1486 54 ATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYMLTYII--AYIRDFACDYYFIGD----SFETSVPW 122 (154)
Q Consensus 54 l~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g-----~~W~~~rF~~--pYLRd~l~d~G~~~D----T~ETA~~W 122 (154)
+.+-..|.+++++..-..+.++.+..-+..-+...| .--...+=++ +-|+|.|--+|+=++ -++|++||
T Consensus 39 vkV~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~ 118 (204)
T COG3286 39 VKVNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPW 118 (204)
T ss_pred EEEEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCH
Confidence 555677889999999999988888766654333322 1111222223 278999999998765 58999999
Q ss_pred CChHHHHHHHHHHHHHH
Q psy1486 123 DKTVLLCINVKKRLTRE 139 (154)
Q Consensus 123 s~l~~l~~~V~~al~~~ 139 (154)
|.+..+.+++-+..+++
T Consensus 119 ~ev~E~vreLse~~~E~ 135 (204)
T COG3286 119 SEVVELVRELSEVYREA 135 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999987776665
No 7
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=71.95 E-value=22 Score=28.27 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=60.8
Q ss_pred EEEEEEeCChHHhHhHHHHHHHHHHHhCCCCCCCcch---hhhhh----hhhhhhhhhhhhhccccce----eeeecccc
Q psy1486 53 AATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNG---RRGYM----LTYIIAYIRDFACDYYFIG----DSFETSVP 121 (154)
Q Consensus 53 ll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g---~~W~~----~rF~~pYLRd~l~d~G~~~----DT~ETA~~ 121 (154)
-+.+-..|++.+++...+.+.++.+...+..-+.+.. -.+.- ..|..+-|-|.|--.|+=+ |.+.|++|
T Consensus 35 ~l~I~i~G~~~eike~~~~Ik~~~~~vr~k~~~~g~~~y~l~~i~r~a~~~vp~d~L~~~L~~~G~~ae~~~~~i~T~a~ 114 (190)
T PF09840_consen 35 SLKIEIQGYEKEIKEAIRRIKELVRRVRSKYNKRGLYRYSLDDIFREAGYPVPPDLLVDALKLLGYKAEYREDVIKTDAP 114 (190)
T ss_pred EEEEEEecChHHHHHHHHHHHHHHHHHHHHhccCCceEEcHHHHHHHcCCCCCHHHHHHHHHhCCCeeEEeCCeEEecCC
Confidence 4667788899899988888888877555522222111 11111 3455568888888888755 58999999
Q ss_pred cCChHHHHHHHHHHHHHH
Q psy1486 122 WDKTVLLCINVKKRLTRE 139 (154)
Q Consensus 122 Ws~l~~l~~~V~~al~~~ 139 (154)
|+.+.++-+++.++....
T Consensus 115 ~eev~~l~~~Lse~~~e~ 132 (190)
T PF09840_consen 115 LEEVVELAERLSEIYKEL 132 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998877643
No 8
>KOG2872|consensus
Probab=57.61 E-value=17 Score=31.27 Aligned_cols=32 Identities=13% Similarity=0.341 Sum_probs=23.4
Q ss_pred hhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEee
Q psy1486 95 LTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLY 153 (154)
Q Consensus 95 ~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v~~~~ 153 (154)
.+|..||||+ |.+++++.|.+.+.+.+=|.+|
T Consensus 226 ~e~s~PYl~~---------------------------I~~~Vk~rl~~~~~~~vPmi~f 257 (359)
T KOG2872|consen 226 EEFSLPYLRQ---------------------------IAEAVKKRLPELGLAPVPMILF 257 (359)
T ss_pred HHhhhHHHHH---------------------------HHHHHHHhhhhhcCCCCceEEE
Confidence 4788899997 5566666677767777777776
No 9
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=44.91 E-value=27 Score=24.95 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHh--CCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeeeecc
Q psy1486 68 NEDKIYSIAKRY--GGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119 (154)
Q Consensus 68 ~~~~~~~i~~~~--GG~~~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA 119 (154)
..+.+..+.... -=+.+|. +...+|--|-+++.+.++|+-+|.+.|.
T Consensus 40 ~~~~l~~~~~~~~peiliiGT-----G~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 40 DPEALLPLLAEDRPDILLIGT-----GAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CHHHHHHHHhhCCCCEEEEcC-----CCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 344444455433 1134576 3445677789999999999999999997
No 10
>KOG4179|consensus
Probab=34.94 E-value=16 Score=33.05 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=19.7
Q ss_pred hhhhccccceeeeecccccCC--hHHHHHHH
Q psy1486 104 DFACDYYFIGDSFETSVPWDK--TVLLCINV 132 (154)
Q Consensus 104 d~l~d~G~~~DT~ETA~~Ws~--l~~l~~~V 132 (154)
.+.-|.|++.|| |||+.|+| ..+.++..
T Consensus 510 hytg~~gylsdt-ets~~w~~e~~~~~~~r~ 539 (568)
T KOG4179|consen 510 HYTGDSGYLSDT-ETSQQWDNETSETDWDRL 539 (568)
T ss_pred eecCCCccccCc-ccccccccccchhhhhhh
Confidence 345578999998 99999995 34444433
No 11
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=30.07 E-value=1.3e+02 Score=26.44 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=51.7
Q ss_pred EeCCh-HHhHhHHHHHHHHHHHhCCCCC-------------CCc--------chhhhhhhhhhhhhhhhhhhccccceee
Q psy1486 58 FEGDP-EDVKNNEDKIYSIAKRYGGIPA-------------GES--------NGRRGYMLTYIIAYIRDFACDYYFIGDS 115 (154)
Q Consensus 58 fEG~~-~~V~~~~~~~~~i~~~~GG~~~-------------G~~--------~g~~W~~~rF~~pYLRd~l~d~G~~~DT 115 (154)
..|.+ -.|-...+.+.+.+++.+|-.+ +.. --+.|.. |=-++-+|++|.+.|++.|
T Consensus 228 VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~se- 305 (358)
T COG1071 228 VDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSE- 305 (358)
T ss_pred ECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCCCH-
Confidence 45655 5688889999999998888322 111 1256665 3334589999999999887
Q ss_pred eecccccCChHHHHHHHHHHHHHHH
Q psy1486 116 FETSVPWDKTVLLCINVKKRLTREC 140 (154)
Q Consensus 116 ~ETA~~Ws~l~~l~~~V~~al~~~~ 140 (154)
..+.++.+++++.|.++.
T Consensus 306 -------e~~~~i~~e~~~~V~ea~ 323 (358)
T COG1071 306 -------EELEAIEAEAKAEVDEAV 323 (358)
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 567777777777777654
No 12
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=28.44 E-value=43 Score=30.29 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=38.4
Q ss_pred hhhhhhhccccceeeeecccccCChHHHHH---------HHHHHHHHHHhccCCCcEEEEe
Q psy1486 101 YIRDFACDYYFIGDSFETSVPWDKTVLLCI---------NVKKRLTRECTGRWLPVLVKLL 152 (154)
Q Consensus 101 YLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~---------~V~~al~~~~~~~g~~~~v~~~ 152 (154)
|=.|..+-.-+...++=||+.|||+-+==. +-...|-.+|.++|+.++|.|-
T Consensus 61 YkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~ 121 (460)
T COG2723 61 YKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY 121 (460)
T ss_pred hHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 456766666677899999999999866110 1234568899999999998873
No 13
>PRK12378 hypothetical protein; Provisional
Probab=24.18 E-value=1.4e+02 Score=24.47 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=27.7
Q ss_pred HhHhHHHHHHHHHHHhCCCCCCCcchhhhhhhhh---hh-----hhhhhhhhcccc
Q psy1486 64 DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTY---II-----AYIRDFACDYYF 111 (154)
Q Consensus 64 ~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rF---~~-----pYLRd~l~d~G~ 111 (154)
-..+....++.++++|||.. |+...-+|.-.|. .+ --+-+.+++.|.
T Consensus 102 N~nRt~~~vr~~f~K~gg~l-~~~gsv~~~Fe~kG~i~i~~~~~d~~~e~aieaGa 156 (235)
T PRK12378 102 NVNRTVANVRSAFNKNGGNL-GTSGSVAFMFDHKGVFVFEGDDEDELLEALIDADV 156 (235)
T ss_pred CHHHHHHHHHHHHhhcCCeE-CCCCceeeeeecceEEEeCCCCHHHHHHHHHhCCC
Confidence 35567788889999999954 4432334443332 22 134455667766
No 14
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=23.16 E-value=82 Score=22.99 Aligned_cols=48 Identities=4% Similarity=-0.004 Sum_probs=35.2
Q ss_pred hhhhhhhhhhhhhhhhhhhccccceeeeec----ccccCChHHHHHHHHHHHHH
Q psy1486 89 GRRGYMLTYIIAYIRDFACDYYFIGDSFET----SVPWDKTVLLCINVKKRLTR 138 (154)
Q Consensus 89 g~~W~~~rF~~pYLRd~l~d~G~~~DT~ET----A~~Ws~l~~l~~~V~~al~~ 138 (154)
|..|...|+ ..+++.|.+.|+=-|-+++ +..+.++.+..+.+.+.|++
T Consensus 71 Gn~~a~~Rv--~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 71 GNYRAEKRV--ERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred hhHHHHHHH--HHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 345666665 5678888888888888887 77778888887777666653
No 15
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.94 E-value=63 Score=24.82 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=26.3
Q ss_pred cceeeeecccccCChHHHHHHHH-HHHHHHHhccCCCcEEEEe
Q psy1486 111 FIGDSFETSVPWDKTVLLCINVK-KRLTRECTGRWLPVLVKLL 152 (154)
Q Consensus 111 ~~~DT~ETA~~Ws~l~~l~~~V~-~al~~~~~~~g~~~~v~~~ 152 (154)
.-.+|+||-+||..-..=++.|+ +++-+-+.+++...-|+.|
T Consensus 46 l~~~T~ete~Pw~~gn~rf~Gvsls~Ll~~l~ak~tslt~iAL 88 (155)
T COG3915 46 LPDETIETETPWTQGNTRFKGVSLSALLAWLGAKQTSLTVIAL 88 (155)
T ss_pred CCcceEEEecCcccCceeecceeHHHHHHHhhccCcceEEEEe
Confidence 45699999999965555555553 3344455666666666544
No 16
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.19 E-value=95 Score=25.17 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=50.8
Q ss_pred HHhHhHHHHHHHHHHHhCCCCCCCcc-------hhhhhhhhhhhh--hhhhhhhccccceeeeecccccCChHHHHHHHH
Q psy1486 63 EDVKNNEDKIYSIAKRYGGIPAGESN-------GRRGYMLTYIIA--YIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 133 (154)
Q Consensus 63 ~~V~~~~~~~~~i~~~~GG~~~G~~~-------g~~W~~~rF~~p--YLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~ 133 (154)
+.++...+.+.+++.++||...-+.. +......++++| .+.+|+.+..=++....-.+.=.++..-|..+.
T Consensus 59 ~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~ 138 (262)
T PF14257_consen 59 KDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLE 138 (262)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHH
Confidence 56888899999999999996543322 344555567776 666666555545555555555567777776666
Q ss_pred HHHHHH
Q psy1486 134 KRLTRE 139 (154)
Q Consensus 134 ~al~~~ 139 (154)
++++.-
T Consensus 139 arl~~l 144 (262)
T PF14257_consen 139 ARLKNL 144 (262)
T ss_pred HHHHHH
Confidence 665543
No 17
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=21.83 E-value=1.3e+02 Score=24.71 Aligned_cols=73 Identities=7% Similarity=-0.029 Sum_probs=52.7
Q ss_pred EEEEEeC-ChHHhHhHHHHHHHHHHHhCCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHH
Q psy1486 54 ATVLFEG-DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINV 132 (154)
Q Consensus 54 l~~gfEG-~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V 132 (154)
-+-||++ ++...+.-..-+.++++ .|-..+.| +||+.|-+-.-.+++|..+=|.=+|.| |...+....
T Consensus 154 TLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAE--------Gr~~tP~~Ak~a~~~Ga~aVvVGsAIT--Rp~~It~~F 222 (229)
T COG3010 154 TLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAE--------GRYNTPEQAKKAIEIGADAVVVGSAIT--RPEEITQWF 222 (229)
T ss_pred ccccccCCCCCCCCCcHHHHHHHHh-CCCeEEee--------CCCCCHHHHHHHHHhCCeEEEECcccC--CHHHHHHHH
Confidence 3457888 45555555666666554 66666665 599999888889999999999999987 666666666
Q ss_pred HHHHH
Q psy1486 133 KKRLT 137 (154)
Q Consensus 133 ~~al~ 137 (154)
.++++
T Consensus 223 ~~~ik 227 (229)
T COG3010 223 VDAIK 227 (229)
T ss_pred HHHHh
Confidence 55554
No 18
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=21.60 E-value=49 Score=20.54 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=17.8
Q ss_pred eEEEEEEeCChHHhHhHHHHHHHHHHHhCCCCC
Q psy1486 52 CAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA 84 (154)
Q Consensus 52 cll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~ 84 (154)
++.+-||++.+ +..+.+++..+||...
T Consensus 2 ~i~~sg~~~~~------~~~l~~~i~~~Gg~~~ 28 (63)
T PF12738_consen 2 VICFSGFSGKE------RSQLRKLIEALGGKYS 28 (63)
T ss_dssp EEEEEEB-TTT------CCHHHHHHHCTT-EEE
T ss_pred EEEECCCCHHH------HHHHHHHHHHCCCEEe
Confidence 45667777655 6677788999999544
No 19
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=20.88 E-value=74 Score=28.45 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=38.6
Q ss_pred hhhhhhhccccceeeeecccccCChHHH------HHHH--HHHHHHHHhccCCCcEEEEe
Q psy1486 101 YIRDFACDYYFIGDSFETSVPWDKTVLL------CINV--KKRLTRECTGRWLPVLVKLL 152 (154)
Q Consensus 101 YLRd~l~d~G~~~DT~ETA~~Ws~l~~l------~~~V--~~al~~~~~~~g~~~~v~~~ 152 (154)
|-.|.-+-..+.++++=+|..|||+.+- -+.| ...+..+|.++|+.++|.|.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~ 115 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH 115 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 3566666667778999999999999773 1112 34668889999999998874
No 20
>KOG0496|consensus
Probab=20.62 E-value=97 Score=29.30 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=44.0
Q ss_pred HHhHhHHHHHHH----HHHHhCCCCC-CCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCCh
Q psy1486 63 EDVKNNEDKIYS----IAKRYGGIPA-GESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKT 125 (154)
Q Consensus 63 ~~V~~~~~~~~~----i~~~~GG~~~-G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l 125 (154)
.+++...+.+.. +..+.||-.+ .+---+-..-.|+-.++-+..+-+...++.++.|.++|=..
T Consensus 142 ~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mC 209 (649)
T KOG0496|consen 142 AEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMC 209 (649)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEe
Confidence 446666666665 7778898433 22112223555666788899999999999999999999654
Done!