Query psy1486
Match_columns 154
No_of_seqs 110 out of 279
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:36:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 99.7 1.7E-17 5.8E-22 148.5 12.5 149 1-149 342-490 (584)
2 4bby_A Alkyldihydroxyacetoneph 99.7 5.2E-17 1.8E-21 146.8 11.5 146 1-146 412-558 (658)
3 1f0x_A DLDH, D-lactate dehydro 98.1 2.7E-07 9.3E-12 82.4 -0.1 93 43-139 381-480 (571)
4 3pm9_A Putative oxidoreductase 97.7 9.7E-05 3.3E-09 64.4 8.8 83 51-139 288-377 (476)
5 1e8g_A Vanillyl-alcohol oxidas 97.6 0.00013 4.5E-09 64.5 7.5 86 51-137 350-448 (560)
6 2exr_A Cytokinin dehydrogenase 96.1 0.0013 4.5E-08 57.7 1.0 75 51-134 311-401 (524)
7 1wvf_A 4-cresol dehydrogenase 95.7 0.078 2.7E-06 46.1 10.4 84 51-138 319-418 (520)
8 1hsk_A UDP-N-acetylenolpyruvoy 58.2 6 0.0002 32.3 2.8 39 50-88 270-309 (326)
9 1w1o_A Cytokinin dehydrogenase 41.7 9.8 0.00034 32.9 1.6 85 52-139 326-421 (534)
10 2ozl_A PDHE1-A type I, pyruvat 32.8 84 0.0029 25.9 5.9 76 57-140 228-325 (365)
11 3r8j_A Heme-binding protein 2; 32.6 51 0.0017 25.3 4.3 48 50-101 137-186 (212)
12 4b0y_A Heme-binding protein 2; 29.5 62 0.0021 25.1 4.3 48 50-101 156-205 (227)
13 2fvt_A Conserved hypothetical 27.4 20 0.00068 25.8 1.0 49 92-152 76-124 (135)
14 3cpk_A Uncharacterized protein 27.2 45 0.0015 24.5 2.9 49 92-152 97-145 (150)
15 4ha4_A Beta-galactosidase; TIM 25.9 16 0.00056 31.5 0.4 51 102-152 64-150 (489)
16 1l7b_A DNA ligase; BRCT, autos 25.3 42 0.0014 22.3 2.3 46 54-102 11-69 (92)
17 1uwi_A Beta-galactosidase; hyd 24.0 29 0.001 29.9 1.6 51 102-152 64-149 (489)
18 1zzk_A Heterogeneous nuclear r 23.1 77 0.0026 20.0 3.2 27 55-81 53-79 (82)
19 2ab1_A Hypothetical protein; H 22.5 24 0.00081 24.8 0.6 49 92-152 70-119 (122)
20 2gm2_A Conserved hypothetical 21.7 25 0.00085 25.1 0.6 49 92-152 73-121 (132)
21 2fi9_A Outer membrane protein; 21.4 29 0.00098 24.5 0.9 48 93-152 78-125 (128)
22 1qs0_A 2-oxoisovalerate dehydr 20.5 2E+02 0.0067 24.0 6.1 76 56-140 271-368 (407)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.73 E-value=1.7e-17 Score=148.51 Aligned_cols=149 Identities=22% Similarity=0.367 Sum_probs=125.7
Q ss_pred CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhC
Q psy1486 1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYG 80 (154)
Q Consensus 1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~G 80 (154)
++.|+.++|+|+.++.+.++..+.++....+.+.+.+.|+.+++++..+..|++++.|+|++++|+.+.+++.++|+++|
T Consensus 342 ~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llve~~g~~~~v~~~~~~~~~~~~~~g 421 (584)
T 2uuu_A 342 EVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNA 421 (584)
T ss_dssp TCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTTTCEEEEEEEEECHHHHHHHHHHHHHHHHTTT
T ss_pred CCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCCccEEEEEEEecChHHHHHHHHHHHHHHHHCC
Confidence 47899999999999887777655433333333444445665566776445699999999999999999999999999999
Q ss_pred CCCCCCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEE
Q psy1486 81 GIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLV 149 (154)
Q Consensus 81 G~~~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v 149 (154)
|...++...+.|+..|+..||+|+.++++|.+.+++||+||||+++++++++++.+.+.++++|.++++
T Consensus 422 ~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~l~~~~~~~g~~~~~ 490 (584)
T 2uuu_A 422 AFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWI 490 (584)
T ss_dssp CEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHHHHhHHHhcCCeeEE
Confidence 988888889999999999999999999999999999999999999999999999999999998887543
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.70 E-value=5.2e-17 Score=146.76 Aligned_cols=146 Identities=51% Similarity=0.999 Sum_probs=122.1
Q ss_pred CCCCceeEeechhhhhhcccCCCC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHh
Q psy1486 1 RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRY 79 (154)
Q Consensus 1 ~l~Pa~~RLsD~~Et~~~lal~~~-~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~ 79 (154)
++.|+++||+|+.++.+..++.+. ......+.++....++..++|++++..|++++.|||+.+.+..+.+.+.++++++
T Consensus 412 ~~~psa~El~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~eg~~~~v~~~~~~~~~~~~~~ 491 (658)
T 4bby_A 412 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKF 491 (658)
T ss_dssp TCCCSEEEEECHHHHHHHHHTSSCCCCTTCC--------------CCCTTTCEEEEEEEEECHHHHHHHHHHHHHHHHTT
T ss_pred CCCccccccccHHHHHHHHhhcccccccccccccchhhhhhhhhccCChHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 468999999999999988887765 4445555566677788888999988899999999999999999999999999999
Q ss_pred CCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCC
Q psy1486 80 GGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLP 146 (154)
Q Consensus 80 GG~~~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~ 146 (154)
||+..++..+++|+..||..||+|+..++.+...+++||++||++++++++++++.+.+.+.+.++.
T Consensus 492 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l~~~~~~~g~~ 558 (658)
T 4bby_A 492 GGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQ 558 (658)
T ss_dssp TCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999887763
No 3
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=98.14 E-value=2.7e-07 Score=82.42 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=68.3
Q ss_pred hcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhCCCCC--CCcchhhhhhhhhhhh----hhhhhhhc-cccceee
Q psy1486 43 ILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDS 115 (154)
Q Consensus 43 ~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~g~~W~~~rF~~p----YLRd~l~d-~G~~~DT 115 (154)
++||+....+.+++-|+|+..+.. .+.+.++++.++|... .++.+++|...||+.+ ++|+...+ .| ...+
T Consensus 381 ~~~~~~~~~~~llve~~g~~~~~~--~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~ 457 (571)
T 1f0x_A 381 MKNWRDKYEHHLLLKMAGDGVGEA--KSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILA 457 (571)
T ss_dssp HHHHHHHCSEEEEEEECTTHHHHH--HHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEE
T ss_pred hhcccccCceEEEEEEecCcHHHH--HHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceE
Confidence 444443334889999999876432 5556678888765433 4567788888999996 88987765 33 3689
Q ss_pred eecccccCChHHHHHHHHHHHHHH
Q psy1486 116 FETSVPWDKTVLLCINVKKRLTRE 139 (154)
Q Consensus 116 ~ETA~~Ws~l~~l~~~V~~al~~~ 139 (154)
+|||+||++++.+ +++++.+.+.
T Consensus 458 ~Dvavp~~~l~~~-~~~~~~l~~~ 480 (571)
T 1f0x_A 458 LDIALRRNDTEWY-EHLPPEIDSQ 480 (571)
T ss_dssp EEEECCTTCSCCS-CCCCHHHHTT
T ss_pred EEEEecHHHhHHH-HHHHHHHHhh
Confidence 9999999999999 9888777654
No 4
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=97.75 E-value=9.7e-05 Score=64.36 Aligned_cols=83 Identities=10% Similarity=-0.052 Sum_probs=61.8
Q ss_pred ceEEEEEEeCChHHhHhHHHHHHHHHHHhCCCCC---CC---cchhhhhhhhhhh-hhhhhhhhccccceeeeecccccC
Q psy1486 51 MCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA---GE---SNGRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWD 123 (154)
Q Consensus 51 ~cll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~---G~---~~g~~W~~~rF~~-pYLRd~l~d~G~~~DT~ETA~~Ws 123 (154)
.+++++.|+|+.++++.+.+++.+++.++|++.- .+ ...+-|. .|-.. +.++ ..|. ..+.+++||||
T Consensus 288 ~~~llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~~~~~----~~g~-~~~~Dv~vP~~ 361 (476)
T 3pm9_A 288 PWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEISPAQK----PEGG-SIKHDISVPVA 361 (476)
T ss_dssp SEEEEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHHHHTG----GGCC-EECCEEECCGG
T ss_pred CeEEEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHHHHHh----hcCC-ceeEEEEeeHH
Confidence 4899999999998898899999999999887431 11 2234554 45444 3333 2343 68899999999
Q ss_pred ChHHHHHHHHHHHHHH
Q psy1486 124 KTVLLCINVKKRLTRE 139 (154)
Q Consensus 124 ~l~~l~~~V~~al~~~ 139 (154)
+++++++.+++.+.+.
T Consensus 362 ~l~~~~~~~~~~~~~~ 377 (476)
T 3pm9_A 362 AVPQFIEQANAAVVAL 377 (476)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998887776
No 5
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=97.60 E-value=0.00013 Score=64.54 Aligned_cols=86 Identities=9% Similarity=-0.113 Sum_probs=64.1
Q ss_pred ceEEEEEEeCChHHhHhHHHHHHHHHHHhCCCCC--CCcc--hhhhhhhhhhh----hhhhhh---hhccccceeeeecc
Q psy1486 51 MCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETS 119 (154)
Q Consensus 51 ~cll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~--g~~W~~~rF~~----pYLRd~---l~d~G~~~DT~ETA 119 (154)
.|++++.++|+++.|+.+.+.+.++|+++|+..+ .+.+ .+.|.. |+.. |+++.. .|..|=...+++++
T Consensus 350 ~~~l~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~ 428 (560)
T 1e8g_A 350 RWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPI 428 (560)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeee
Confidence 3889999999999999999999999999998533 3222 345554 7654 877754 23332235668999
Q ss_pred ccc--CChHHHHHHHHHHHH
Q psy1486 120 VPW--DKTVLLCINVKKRLT 137 (154)
Q Consensus 120 ~~W--s~l~~l~~~V~~al~ 137 (154)
+|| ++++++++.+++.+.
T Consensus 429 vP~~~~~l~~~~~~~~~~~~ 448 (560)
T 1e8g_A 429 AKVSGEDAMMQYAVTKKRCQ 448 (560)
T ss_dssp ECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 999 999999999976543
No 6
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=96.11 E-value=0.0013 Score=57.71 Aligned_cols=75 Identities=5% Similarity=-0.107 Sum_probs=57.4
Q ss_pred ceEEEEEE-----eC-ChHHhHhHHHHHHHHHHHhCCCCCCCc----------chhhhhhhhhhhhhhhhhhhcccccee
Q psy1486 51 MCAATVLF-----EG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGD 114 (154)
Q Consensus 51 ~cll~~gf-----EG-~~~~V~~~~~~~~~i~~~~GG~~~G~~----------~g~~W~~~rF~~pYLRd~l~d~G~~~D 114 (154)
.|++++.| +| ++++|+.+.+.+.++++.+||....+. ....|...++..|.+.. .
T Consensus 311 ~~~llve~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~---- 381 (524)
T 2exr_A 311 SVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P---- 381 (524)
T ss_dssp SEEEEEEEEEEECTTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----
T ss_pred cEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----
Confidence 48888888 89 788899999999999999999755532 22347766665554432 1
Q ss_pred eeecccccCChHHHHHHHHH
Q psy1486 115 SFETSVPWDKTVLLCINVKK 134 (154)
Q Consensus 115 T~ETA~~Ws~l~~l~~~V~~ 134 (154)
++++++|||++++++++|++
T Consensus 382 ~~Dv~VP~s~l~~~~~~v~~ 401 (524)
T 2exr_A 382 WLNLFVSKRDIGDFNRTVFK 401 (524)
T ss_dssp CEEEEEEHHHHHHHHHHCCC
T ss_pred eeEEEECHHHHHHHHHHHHH
Confidence 35999999999999998865
No 7
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=95.68 E-value=0.078 Score=46.14 Aligned_cols=84 Identities=11% Similarity=-0.118 Sum_probs=52.4
Q ss_pred ceEEEEEEeCChHHhHhHHHHHHHHHHHhCCCCCCCcchhhhhhhhhhhhhhhhhhh--------------c--ccccee
Q psy1486 51 MCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC--------------D--YYFIGD 114 (154)
Q Consensus 51 ~cll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rF~~pYLRd~l~--------------d--~G~~~D 114 (154)
.+++++.|+|++++|+.+.+.+.++++++|+..+. ...|.+ +-...++|..++ . .+.+.+
T Consensus 319 ~~~l~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (520)
T 1wvf_A 319 AWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIV---TQEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWF 394 (520)
T ss_dssp SEEEEEEEEESHHHHHHHHHHHHHHHHHHTCCEEE---EHHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEEE---ecccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEe
Confidence 37888889999999999999999999999985432 111211 112223333222 0 122333
Q ss_pred eeecccccCChHHHHHHHHHHHHH
Q psy1486 115 SFETSVPWDKTVLLCINVKKRLTR 138 (154)
Q Consensus 115 T~ETA~~Ws~l~~l~~~V~~al~~ 138 (154)
+.-..++|++++++++.+++.+.+
T Consensus 395 d~~vp~~~~~l~~~~~~~~~~~~~ 418 (520)
T 1wvf_A 395 APVSEARGSECKKQAAMAKRVLHK 418 (520)
T ss_dssp CBEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHH
Confidence 334455669999999888665543
No 8
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=58.24 E-value=6 Score=32.26 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=34.1
Q ss_pred CceEEEEEEeC-ChHHhHhHHHHHHHHHHHhCCCCCCCcc
Q psy1486 50 EMCAATVLFEG-DPEDVKNNEDKIYSIAKRYGGIPAGESN 88 (154)
Q Consensus 50 ~~cll~~gfEG-~~~~V~~~~~~~~~i~~~~GG~~~G~~~ 88 (154)
+.|.+++-++| +.+++....+.+.+++++++|+.+..++
T Consensus 270 ~~a~~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 270 KHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp SCTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred cccEEEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 34788999999 7788999999999999999999887764
No 9
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=41.67 E-value=9.8 Score=32.89 Aligned_cols=85 Identities=7% Similarity=-0.064 Sum_probs=44.1
Q ss_pred eEEEEEEe----CC-h--HHhHhHHHHHHHHHHHhCCCCCC-Ccchhhhhhhhhhhhh--hhhh-hhccccceeeeeccc
Q psy1486 52 CAATVLFE----GD-P--EDVKNNEDKIYSIAKRYGGIPAG-ESNGRRGYMLTYIIAY--IRDF-ACDYYFIGDSFETSV 120 (154)
Q Consensus 52 cll~~gfE----G~-~--~~V~~~~~~~~~i~~~~GG~~~G-~~~g~~W~~~rF~~pY--LRd~-l~d~G~~~DT~ETA~ 120 (154)
+++++.+. |+ + ++++...+.+.++++.+|+.... ..+...|.+ ++.... +|.. ++..+- -..++++
T Consensus 326 ~~l~ie~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~-~~~~~~w~~r~~~~~~~~~--~~~d~~v 402 (534)
T 1w1o_A 326 TVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLD-RVHGEEVALNKLGLWRVPH--PWLNMFV 402 (534)
T ss_dssp EEEEEEEEEEC-------CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHT-HHHHHHHHHHHTTCSSSCC--CCEEEEE
T ss_pred eEEEEEEEEecCCCccchhhhHHHHHHHHHhhcccCCcceeccchHHHHhh-hhhhhHHHHhhccccccCC--ccccEEe
Confidence 55555544 74 4 67788888888888777763222 111122221 111111 2221 121111 0228889
Q ss_pred ccCChHHHHHHHHHHHHHH
Q psy1486 121 PWDKTVLLCINVKKRLTRE 139 (154)
Q Consensus 121 ~Ws~l~~l~~~V~~al~~~ 139 (154)
|||+++++.+++.+++.+.
T Consensus 403 P~s~l~~~~~~~~~~l~~~ 421 (534)
T 1w1o_A 403 PRSRIADFDRGVFKGILQG 421 (534)
T ss_dssp EGGGHHHHHHHHTTTTTTT
T ss_pred cHHHHHhHHHHHHHHHhhc
Confidence 9999999998886655443
No 10
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=32.84 E-value=84 Score=25.91 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=48.9
Q ss_pred EEeC-ChHHhHhHHHHHHHHHHHhCCCCC-------------CCc--------chhhhhhhhhhhhhhhhhhhcccccee
Q psy1486 57 LFEG-DPEDVKNNEDKIYSIAKRYGGIPA-------------GES--------NGRRGYMLTYIIAYIRDFACDYYFIGD 114 (154)
Q Consensus 57 gfEG-~~~~V~~~~~~~~~i~~~~GG~~~-------------G~~--------~g~~W~~~rF~~pYLRd~l~d~G~~~D 114 (154)
-.+| +...|....+.+.+.+++.+|-.+ +.. --+.|...+=-+.-+|+.|.+.|++.+
T Consensus 228 ~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~ 307 (365)
T 2ozl_A 228 RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASV 307 (365)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCH
Confidence 3578 467788888888887877777322 111 125666544334578899999999876
Q ss_pred eeecccccCChHHHHHHHHHHHHHHH
Q psy1486 115 SFETSVPWDKTVLLCINVKKRLTREC 140 (154)
Q Consensus 115 T~ETA~~Ws~l~~l~~~V~~al~~~~ 140 (154)
+.+.++.+++++.|.++.
T Consensus 308 --------~~~~~i~~~~~~~v~~a~ 325 (365)
T 2ozl_A 308 --------EELKEIDVEVRKEIEDAA 325 (365)
T ss_dssp --------HHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 345566666666665554
No 11
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=32.62 E-value=51 Score=25.28 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=36.1
Q ss_pred CceEEEEEEeCCh--HHhHhHHHHHHHHHHHhCCCCCCCcchhhhhhhhhhhhh
Q psy1486 50 EMCAATVLFEGDP--EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 101 (154)
Q Consensus 50 ~~cll~~gfEG~~--~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rF~~pY 101 (154)
..+++++.|.|.. +.+..+.+++.+.++++|-...|. -.+-.+|+.|+
T Consensus 137 ~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~----~y~~A~Yd~P~ 186 (212)
T 3r8j_A 137 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK----VYYTAGYNSPV 186 (212)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCCBCSS----CEEEEESSSSS
T ss_pred CEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCccCCC----cEEEEEeCCCC
Confidence 4689999999954 568888999999999998665444 34555666664
No 12
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=29.46 E-value=62 Score=25.13 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=34.3
Q ss_pred CceEEEEEEeCCh--HHhHhHHHHHHHHHHHhCCCCCCCcchhhhhhhhhhhhh
Q psy1486 50 EMCAATVLFEGDP--EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 101 (154)
Q Consensus 50 ~~cll~~gfEG~~--~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rF~~pY 101 (154)
..+++++.|.|.. +.+..+.+++.+.+++.|-...|+ -.+-.+|+.|+
T Consensus 156 ~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~~~~~----~y~~A~Yd~P~ 205 (227)
T 4b0y_A 156 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK----VYYTAGYNSPV 205 (227)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCCBCSS----CEEEEECC---
T ss_pred CEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCccCCC----cEEEEEeCCCC
Confidence 4689999999954 568888999999999998665444 34555676665
No 13
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=27.37 E-value=20 Score=25.75 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=34.3
Q ss_pred hhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEe
Q psy1486 92 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 152 (154)
Q Consensus 92 W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v~~~ 152 (154)
+...+|--|-+|+.|.+.|+-+|++.|..- -+. -..|..+|-++...|+
T Consensus 76 G~~~~~l~p~l~~~l~~~GI~vE~M~T~aA----crT--------yNiL~~EgR~VaAaLi 124 (135)
T 2fvt_A 76 GADVWIAPRQLREALRGVNVVLDTMQTGPA----IRT--------YNIMIGERRRVAAALI 124 (135)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHHH----HHH--------HHHHHHHTSCEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHHHH----HHH--------HHHHHhCCCcEEEEEc
Confidence 455678779999999999999999999632 222 3345555666665554
No 14
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=27.16 E-value=45 Score=24.53 Aligned_cols=49 Identities=12% Similarity=-0.095 Sum_probs=35.7
Q ss_pred hhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEe
Q psy1486 92 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 152 (154)
Q Consensus 92 W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v~~~ 152 (154)
+...+|--|-++..|.++|+.+|.+.|..- .+ .-..|..+|-++.+.|+
T Consensus 97 G~~~~~l~p~~~~~L~~~GIgvE~M~T~aA----~r--------TyNiL~~EgRrVaaaLi 145 (150)
T 3cpk_A 97 GRRQHLLGPEQVRPLLAMGVGVEAMDTQAA----AR--------TYNILMAEGRRVVVALL 145 (150)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHHH----HH--------HHHHHHHTTCCEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHcCCEEEEeCHHHH----HH--------HHHHHHhCCCcEEEEEe
Confidence 455678889999999999999999998532 12 23445666777776664
No 15
>4ha4_A Beta-galactosidase; TIM barrel, beta-glycosidase, hydrolase; HET: GOL PG6; 1.37A {Acidilobus saccharovorans} PDB: 4ha3_A* 1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A* 4eam_A 4ean_A
Probab=25.90 E-value=16 Score=31.45 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=34.1
Q ss_pred hhhhhhccccceeeeecccccCChHHH-----------------------------H-------HHHHHHHHHHHhccCC
Q psy1486 102 IRDFACDYYFIGDSFETSVPWDKTVLL-----------------------------C-------INVKKRLTRECTGRWL 145 (154)
Q Consensus 102 LRd~l~d~G~~~DT~ETA~~Ws~l~~l-----------------------------~-------~~V~~al~~~~~~~g~ 145 (154)
-+|.-+-..+.++++=+|..|||+-+- - =+-...|..+|.+.|+
T Consensus 64 ~eDi~l~~~mG~~~yRfSIsWsRI~P~G~~~~~~~~e~~gd~~~~~~~~~g~~~~~~~~~N~~Gl~fY~~lid~Ll~~GI 143 (489)
T 4ha4_A 64 RKFHDAAQAMGLTAARIGVEWSRIFPRPTFDVKVDAEVKGDDVLSVYVSEGALEQLDKMANRDAINHYREMFSDLRSRGI 143 (489)
T ss_dssp HHHHHHHHHTTCCEEEEECCHHHHCSSCCTTSCCEEEEETTEEEEEECCHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEeeccHHhcCcCCCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHcCC
Confidence 344433344567999999999998541 0 0123455888899999
Q ss_pred CcEEEEe
Q psy1486 146 PVLVKLL 152 (154)
Q Consensus 146 ~~~v~~~ 152 (154)
.++|.|.
T Consensus 144 eP~VTL~ 150 (489)
T 4ha4_A 144 TFILNLY 150 (489)
T ss_dssp EEEEESC
T ss_pred eeeEeec
Confidence 9998763
No 16
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=25.33 E-value=42 Score=22.28 Aligned_cols=46 Identities=15% Similarity=0.318 Sum_probs=29.9
Q ss_pred EEEEEeCChHHhHhHHHHHHHHHHHhCC------------CCCCCcchhhhhhh-hhhhhhh
Q psy1486 54 ATVLFEGDPEDVKNNEDKIYSIAKRYGG------------IPAGESNGRRGYML-TYIIAYI 102 (154)
Q Consensus 54 l~~gfEG~~~~V~~~~~~~~~i~~~~GG------------~~~G~~~g~~W~~~-rF~~pYL 102 (154)
.++.|.|.-.. .++.+.+++.++|| +.+|+.+|.+..+. .+.+|-+
T Consensus 11 ~~~v~TG~l~~---~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii 69 (92)
T 1l7b_A 11 LTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTL 69 (92)
T ss_dssp CEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCE
T ss_pred cEEEEecCCCC---CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEE
Confidence 34567886543 57888899999999 34577777665443 3444443
No 17
>1uwi_A Beta-galactosidase; hydrolase, beta-glycosidase, glycosidase; 2.55A {Sulfolobus solfataricus} SCOP: c.1.8.4 PDB: 1gow_A
Probab=23.96 E-value=29 Score=29.86 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=33.7
Q ss_pred hhhhhhccccceeeeecccccCChHHH-----------------------------------HHHHHHHHHHHHhccCCC
Q psy1486 102 IRDFACDYYFIGDSFETSVPWDKTVLL-----------------------------------CINVKKRLTRECTGRWLP 146 (154)
Q Consensus 102 LRd~l~d~G~~~DT~ETA~~Ws~l~~l-----------------------------------~~~V~~al~~~~~~~g~~ 146 (154)
=+|.-+-..+.++++=+|+.|||+-+= ==+-...|..+|.+.|+.
T Consensus 64 ~eDi~l~~elG~~~yRfSIsWsRI~P~G~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~~N~~Gl~fY~~lid~Ll~~GIe 143 (489)
T 1uwi_A 64 KTFHNNAQKMGLKIARLNSEWSRQFPNPLPRPQNFDESKQDVTEVEINENELKRLDEYANKDALNHYREIFKDLKSRGLY 143 (489)
T ss_dssp HHHHHHHHHTTCCEEEEECCHHHHCCSCCCCCTTCCTTCSCCCCCCCCHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCCEEEEeCcHHHCCCCCCccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHcCCc
Confidence 344433344567999999999998530 001234558888899999
Q ss_pred cEEEEe
Q psy1486 147 VLVKLL 152 (154)
Q Consensus 147 ~~v~~~ 152 (154)
++|.|.
T Consensus 144 P~VTL~ 149 (489)
T 1uwi_A 144 FIQNMY 149 (489)
T ss_dssp EEEESC
T ss_pred ceEEee
Confidence 998763
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=23.05 E-value=77 Score=20.03 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=21.8
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHhCC
Q psy1486 55 TVLFEGDPEDVKNNEDKIYSIAKRYGG 81 (154)
Q Consensus 55 ~~gfEG~~~~V~~~~~~~~~i~~~~GG 81 (154)
++-..|+++.|+..++.+.++++..+|
T Consensus 53 ~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 53 IITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 344567899999999999999887765
No 19
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=22.46 E-value=24 Score=24.82 Aligned_cols=49 Identities=8% Similarity=-0.105 Sum_probs=34.0
Q ss_pred hhhhhh-hhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEe
Q psy1486 92 GYMLTY-IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 152 (154)
Q Consensus 92 W~~~rF-~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v~~~ 152 (154)
+...+| --|-+++.+.++|+-+|.+.|..- -+. -..|..+|-++...|+
T Consensus 70 G~~~~~~~~~~~~~~l~~~gI~ve~m~T~~A----~rt--------yN~L~~EgR~VaAal~ 119 (122)
T 2ab1_A 70 GMSEALKVPSSTVEYLKKHGIDVRVLQTEQA----VKE--------YNALVAQGVRVGGVFH 119 (122)
T ss_dssp CSSCCSCCCHHHHHHHHHTTCEEEEECHHHH----HHH--------HHHHHHTTCCEEEEEE
T ss_pred CCCCccCCCHHHHHHHHHcCCEEEEeCHHHH----HHH--------HHHHHhCCCcEEEEEe
Confidence 566788 568999999999999999988532 122 3445556666655543
No 20
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=21.70 E-value=25 Score=25.07 Aligned_cols=49 Identities=4% Similarity=-0.099 Sum_probs=34.1
Q ss_pred hhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEe
Q psy1486 92 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 152 (154)
Q Consensus 92 W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v~~~ 152 (154)
+...+|--|-+|+.|.+.|+-+|.+.|..- -+. -..|..+|-++...|+
T Consensus 73 G~~~~~l~p~~~~~l~~~GI~vE~m~T~aA----crT--------yNiL~~EgR~VaAaLi 121 (132)
T 2gm2_A 73 GERQQFPSTDVLAACLTRGIGLEAMTNAAA----ART--------YNVLASEGRRVALAMI 121 (132)
T ss_dssp TTSCCCCCHHHHHHHHHHTCEEEEECHHHH----HHH--------HHHHHHHTCCEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHHHH----HHH--------HHHHHhCCCcEEEEEc
Confidence 556678789999999999999999999432 222 3345555666655554
No 21
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=21.36 E-value=29 Score=24.50 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=34.1
Q ss_pred hhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEe
Q psy1486 93 YMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 152 (154)
Q Consensus 93 ~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v~~~ 152 (154)
...+|--|-+|+.+.++|+-+|.+.|..- -+ .-..|..+|-++...|+
T Consensus 78 ~~~~~l~p~~~~~l~~~GI~vE~m~T~aA----cr--------tyNiL~~EgR~VaaaLi 125 (128)
T 2fi9_A 78 VELLRLPEELRVLLWEKRISSDTMSTGAA----VR--------TFNVLLAEDRAVAALLF 125 (128)
T ss_dssp TSCCCCCHHHHHHHHHTTCEEEEECHHHH----HH--------HHHHHHHTTCCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHcCCEEEEeCHHHH----HH--------HHHHHHhCCCcEEEEEE
Confidence 33678889999999999999999999432 11 23445666666666654
No 22
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=20.54 E-value=2e+02 Score=24.04 Aligned_cols=76 Identities=9% Similarity=-0.013 Sum_probs=47.2
Q ss_pred EEEeCC-hHHhHhHHHHHHHHHHHhCCCCC-------------CCcch--------hhhhhhhhhhhhhhhhhhccccce
Q psy1486 56 VLFEGD-PEDVKNNEDKIYSIAKRYGGIPA-------------GESNG--------RRGYMLTYIIAYIRDFACDYYFIG 113 (154)
Q Consensus 56 ~gfEG~-~~~V~~~~~~~~~i~~~~GG~~~-------------G~~~g--------~~W~~~rF~~pYLRd~l~d~G~~~ 113 (154)
+-.+|. ...|....+.+.+.+++.+|-.+ ++.+. +.|.. +=-+.-+|+.|.+.|++.
T Consensus 271 ~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~-~DPi~~~~~~L~~~g~~~ 349 (407)
T 1qs0_A 271 LRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWS 349 (407)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTT-CCHHHHHHHHHHHTTSCC
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHCCCCC
Confidence 346785 46788888888887777777211 22221 35664 322357889999999987
Q ss_pred eeeecccccCChHHHHHHHHHHHHHHH
Q psy1486 114 DSFETSVPWDKTVLLCINVKKRLTREC 140 (154)
Q Consensus 114 DT~ETA~~Ws~l~~l~~~V~~al~~~~ 140 (154)
+ +.+.++.+++++.|.++.
T Consensus 350 ~--------~~~~~i~~~~~~~v~~a~ 368 (407)
T 1qs0_A 350 E--------EEHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp H--------HHHHHHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHHHHHHH
Confidence 7 344555566665555554
Done!