BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14860
(711 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 159/560 (28%), Positives = 246/560 (43%), Gaps = 129/560 (23%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVT+ WWNDLWL+EGFAS++EY G DH P WN+ D + + + +DAL++
Sbjct: 325 HQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALAS 384
Query: 115 SHPISV---TVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171
SHP++ V+ P +I +FD+ISYSKGA+++ ML FL + + GL YL+ Y N
Sbjct: 385 SHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQN 444
Query: 172 AETKDFWSVLSKHSNHSIN------VKAIMDTWSRQMGFPVIRISRITPQHXXXXXXXXX 225
D W L K + + V+AIMD W+ QMGFPVI + T
Sbjct: 445 TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTG----------- 493
Query: 226 XXXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWM 285
+ +Q FLL +E N ++ S +DY W VP+S + Q+ W+
Sbjct: 494 -------NISQKHFLLDSE---SNVTR----SSAFDYLWIVPISSIKNGV---MQDHYWL 536
Query: 286 NMTDVT------FKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADR 339
DV+ FK S W+ NVN +G+++V YD+ W + L+TN V +R
Sbjct: 537 R--DVSQAQNDLFKTA-SDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINR 593
Query: 340 ASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWD 399
A +I D+F L+ + + PVT L N++ F + W
Sbjct: 594 AQVIYDSFNLATAH-----------MVPVTLALDNTL-----------FLNGEKEYMPWQ 631
Query: 400 ALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALE 459
A + +L +F DR+ + + YL K+ + + +
Sbjct: 632 AALSSLSYFSLMF---DRSEVYG-----------------PMKKYLRKQVEPL-----FQ 666
Query: 460 HFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVD 519
HF+ + + +E P L +QY + + ++ A G+
Sbjct: 667 HFETLTKNWTE-RPENLMDQYSE------------------------INAISTACSNGLP 701
Query: 520 TVVKESKSKFNGWMEKGFRIP--PNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSEPY 577
+K+ F+ WM P PNLR +Y I GG +W W + ++ +
Sbjct: 702 QCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVN--- 758
Query: 578 LATTHFEPTYARSAFPCFDE 597
E RSA C +E
Sbjct: 759 ------EADKLRSALACSNE 772
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 15/141 (10%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLL 637
LATT + T AR +FPCFDEP KA F +++ +L NMP + T L
Sbjct: 140 LATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS-------STPLA 192
Query: 638 RD------DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK--FALN 689
D +F+ + MSTYL+A++V ++Q++ + GV + ++A P+ + + +ALN
Sbjct: 193 EDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALN 252
Query: 690 TSTHMMDFYEEFFGVPYPLPK 710
+ +++F+ + YPLPK
Sbjct: 253 VTGPILNFFANHYNTSYPLPK 273
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/561 (28%), Positives = 246/561 (43%), Gaps = 131/561 (23%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVT+ WWNDLWL+EGFAS++EY G DH P WN+ D + + + +DAL++
Sbjct: 325 HQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALAS 384
Query: 115 SHPISV---TVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171
SHP++ V+ P +I +FD+ISYSKGA+++ ML FL + + GL YL+ Y N
Sbjct: 385 SHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQN 444
Query: 172 AETKDFWSVLSKHSNHSIN------VKAIMDTWSRQMGFPVIRISRITPQHXXXXXXXXX 225
D W L K + + V+AIMD W+ QMGFPVI + T
Sbjct: 445 TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTG----------- 493
Query: 226 XXXMIEYSATQTRFLLTNEPYGRNDSKLLLPR-SPYDYKWYVPLSYYTDQTGYKEQEIVW 284
+ +Q FLL DS+ + R S +DY W VP+S + Q+ W
Sbjct: 494 -------NISQKHFLL--------DSESNVTRSSAFDYLWIVPISSIKNGV---MQDHYW 535
Query: 285 MNMTDVT------FKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPAD 338
+ DV+ FK S W+ NVN +G+++V YD+ W + L+TN V +
Sbjct: 536 LR--DVSQAQNDLFKTA-SDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVIN 592
Query: 339 RASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYRVTYDDHLW 398
RA +I D+F L+ + + PVT L N++ F + W
Sbjct: 593 RAQVIYDSFNLATAH-----------MVPVTLALDNTL-----------FLNGEKEYMPW 630
Query: 399 DALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATAL 458
A + +L +F DR+ + + YL K+ + +
Sbjct: 631 QAALSSLSYFSLMF---DRSEVYG-----------------PMKKYLRKQVEPL-----F 665
Query: 459 EHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGV 518
+HF+ + + +E P L +QY + + ++ A G+
Sbjct: 666 QHFETLTKNWTE-RPENLMDQYSE------------------------INAISTACSNGL 700
Query: 519 DTVVKESKSKFNGWMEKGFRIP--PNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSEP 576
+K+ F+ WM P PNLR +Y I GG +W W + ++ +
Sbjct: 701 PQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVN-- 758
Query: 577 YLATTHFEPTYARSAFPCFDE 597
E RSA C +E
Sbjct: 759 -------EADKLRSALACSNE 772
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 15/141 (10%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLL 637
LATT + T AR +FPCFDEP KA F +++ +L NMP + T L
Sbjct: 140 LATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS-------STPLA 192
Query: 638 RD------DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK--FALN 689
D +F+ + MSTYL+A++V ++Q++ + GV + ++A P+ + + +ALN
Sbjct: 193 EDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALN 252
Query: 690 TSTHMMDFYEEFFGVPYPLPK 710
+ +++F+ + YPLPK
Sbjct: 253 VTGPILNFFANHYNTSYPLPK 273
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/561 (28%), Positives = 246/561 (43%), Gaps = 131/561 (23%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVT+ WWNDLWL+EGFAS++EY G DH P WN+ D + + + +DAL++
Sbjct: 326 HQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALAS 385
Query: 115 SHPISV---TVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171
SHP++ V+ P +I +FD+ISYSKGA+++ ML FL + + GL YL+ Y N
Sbjct: 386 SHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQN 445
Query: 172 AETKDFWSVLSKHSNHSIN------VKAIMDTWSRQMGFPVIRISRITPQHXXXXXXXXX 225
D W L K + + V+AIMD W+ QMGFPVI + T
Sbjct: 446 TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTG----------- 494
Query: 226 XXXMIEYSATQTRFLLTNEPYGRNDSKLLLPR-SPYDYKWYVPLSYYTDQTGYKEQEIVW 284
+ +Q FLL DS+ + R S +DY W VP+S + Q+ W
Sbjct: 495 -------NISQKHFLL--------DSESNVTRSSAFDYLWIVPISSIKNGV---MQDHYW 536
Query: 285 MNMTDVT------FKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPAD 338
+ DV+ FK S W+ NVN +G+++V YD+ W + L+TN V +
Sbjct: 537 LR--DVSQAQNDLFKTA-SDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVIN 593
Query: 339 RASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYRVTYDDHLW 398
RA +I D+F L+ + + PVT L N++ F + W
Sbjct: 594 RAQVIYDSFNLATAH-----------MVPVTLALDNTL-----------FLNGEKEYMPW 631
Query: 399 DALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATAL 458
A + +L +F DR+ + + YL K+ + +
Sbjct: 632 QAALSSLSYFSLMF---DRSEVYG-----------------PMKKYLRKQVEPL-----F 666
Query: 459 EHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGV 518
+HF+ + + +E P L +QY + + ++ A G+
Sbjct: 667 QHFETLTKNWTE-RPENLMDQYSE------------------------INAISTACSNGL 701
Query: 519 DTVVKESKSKFNGWMEKGFRIP--PNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSEP 576
+K+ F+ WM P PNLR +Y I GG +W W + ++ +
Sbjct: 702 PQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVN-- 759
Query: 577 YLATTHFEPTYARSAFPCFDE 597
E RSA C +E
Sbjct: 760 -------EADKLRSALACSNE 773
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 15/141 (10%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLL 637
LATT + T AR +FPCFDEP KA F +++ +L NMP + T L
Sbjct: 141 LATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS-------STPLA 193
Query: 638 RD------DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK--FALN 689
D +F+ + MSTYL+A++V ++Q++ + GV + ++A P+ + + +ALN
Sbjct: 194 EDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALN 253
Query: 690 TSTHMMDFYEEFFGVPYPLPK 710
+ +++F+ + YPLPK
Sbjct: 254 VTGPILNFFANHYNTSYPLPK 274
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 160/561 (28%), Positives = 246/561 (43%), Gaps = 131/561 (23%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVT+ WWNDLWL+EGFAS++EY G DH P WN+ D + + + +DAL++
Sbjct: 369 HQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALAS 428
Query: 115 SHPISV---TVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171
SHP++ V+ P +I +FD+ISYSKGA+++ ML FL + + GL YL+ Y N
Sbjct: 429 SHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQN 488
Query: 172 AETKDFWSVLSKHSNHSIN------VKAIMDTWSRQMGFPVIRISRITPQHXXXXXXXXX 225
D W L K + + V+AIMD W+ QMGFPVI + T
Sbjct: 489 TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTG----------- 537
Query: 226 XXXMIEYSATQTRFLLTNEPYGRNDSKLLLPR-SPYDYKWYVPLSYYTDQTGYKEQEIVW 284
+ +Q FLL DS+ + R S +DY W VP+S + Q+ W
Sbjct: 538 -------NISQKHFLL--------DSESNVTRSSAFDYLWIVPISSIKNGV---MQDHYW 579
Query: 285 MNMTDVT------FKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPAD 338
+ DV+ FK S W+ NVN +G+++V YD+ W + L+TN V +
Sbjct: 580 LR--DVSQAQNDLFKTA-SDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVIN 636
Query: 339 RASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYRVTYDDHLW 398
RA +I D+F L+ + + PVT L N++ F + W
Sbjct: 637 RAQVIYDSFNLATAH-----------MVPVTLALDNTL-----------FLNGEKEYMPW 674
Query: 399 DALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATAL 458
A + +L +F DR+ + + YL K+ + +
Sbjct: 675 QAALSSLSYFSLMF---DRSEVYG-----------------PMKKYLRKQVEPL-----F 709
Query: 459 EHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGV 518
+HF+ + + +E P L +QY + + ++ A G+
Sbjct: 710 QHFETLTKNWTE-RPENLMDQYSE------------------------INAISTACSNGL 744
Query: 519 DTVVKESKSKFNGWMEKGFRIP--PNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSEP 576
+K+ F+ WM P PNLR +Y I GG +W W + ++ +
Sbjct: 745 PQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVN-- 802
Query: 577 YLATTHFEPTYARSAFPCFDE 597
E RSA C +E
Sbjct: 803 -------EADKLRSALACSNE 816
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 15/141 (10%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLL 637
LATT + T AR +FPCFDEP KA F +++ +L NMP + T L
Sbjct: 184 LATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGS-------STPLA 236
Query: 638 RD------DFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAK--FALN 689
D +F+ + MSTYL+A++V ++Q++ + GV + ++A P+ + + +ALN
Sbjct: 237 EDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALN 296
Query: 690 TSTHMMDFYEEFFGVPYPLPK 710
+ +++F+ + YPLPK
Sbjct: 297 VTGPILNFFANHYNTSYPLPK 317
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 179/336 (53%), Gaps = 57/336 (16%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVT+ WWNDLWL+EGFAS++EY G D+ P WN+ D +L+ + + +DAL++
Sbjct: 328 HQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALAS 387
Query: 115 SHPISV---TVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171
SHP+S ++ P +I +FD ISYSKGA++L ML FL + + GL YL+T Y N
Sbjct: 388 SHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQN 447
Query: 172 AETKDFWSVLSKH-SNHSIN----VKAIMDTWSRQMGFPVIRISRITPQHXXXXXXXXXX 226
+ W L + +N SI V+ IM+ W+ QMGFPVI + T
Sbjct: 448 TIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTG------------ 495
Query: 227 XXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMN 286
+ +Q FLL +P DS + P S ++Y W VP++ D ++Q+ W+
Sbjct: 496 ------TLSQEHFLL--DP----DSNVTRP-SEFNYVWIVPITSIRDG---RQQQDYWL- 538
Query: 287 MTDVTFKLPNSI------KWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRA 340
+ + N + +W+ N+N +G+YRV YD+ W + L+ +H +RA
Sbjct: 539 ---IDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRA 595
Query: 341 SLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSI 376
+I+DAF L+ + PVT L N++
Sbjct: 596 QIINDAFNLASAHKV-----------PVTLALNNTL 620
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 17/229 (7%)
Query: 377 KWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNAT 436
+W+ N+N +G+YRV YD+ W + L+ +H +RA +I+DAF L+ A V T
Sbjct: 554 EWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVT 613
Query: 437 VPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHI---- 492
+ L + +L++E+ Y+PW AL ++ + Y + Y+KK +TP+ H
Sbjct: 614 LALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNT 673
Query: 493 -GWEDTGSHL-EKLMRSDILAAAVLVGVDTVVKESKSKFNGWME--KGFRIPPNLREVVY 548
W + +L ++ + ++ A GV + F WME I PNLR VY
Sbjct: 674 NNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVY 733
Query: 549 YAGIKYGGVKEWQNCWAKYNSTRVPSEPYLATTHFEPTYARSAFPCFDE 597
I GG +EW W ++ + AT E R+A C E
Sbjct: 734 CNAIAQGGEEEWDFAWEQFRN---------ATLVNEADKLRAALACSKE 773
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNM----PITSTDDVGFYMG 633
+ATT + AR +FPCFDEP KA F +++ + +L NM P T + +
Sbjct: 143 VATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNV 202
Query: 634 TGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLP--QAKFALNTS 691
T +F + +MSTYL+AF+V ++ + + GV + ++A P + +ALN +
Sbjct: 203 T-----EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVT 257
Query: 692 THMMDFYEEFFGVPYPLPK 710
+++F+ + PYPLPK
Sbjct: 258 GPILNFFAGHYDTPYPLPK 276
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 169/337 (50%), Gaps = 57/337 (16%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVTM WWNDLWL+EGFA F+E+ V P + D F K A+ +DAL++
Sbjct: 363 HQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNS 421
Query: 115 SHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAET 174
SHP+S V +P +I +FD +SY KGA IL ML ++L ++G+ YL H Y N +
Sbjct: 422 SHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKN 481
Query: 175 KDFWSVLSK-------------------------HSNHSINVKAIMDTWSRQMGFPVIRI 209
+D W ++ ++VK +M+TW+ Q GFP+I I
Sbjct: 482 EDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITI 541
Query: 210 S-RITPQHXXXXXXXXXXXXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPL 268
+ R H Q ++ ++ G D+ Y W+VPL
Sbjct: 542 TVRGRNVHMK-----------------QEHYMKGSD--GAPDT---------GYLWHVPL 573
Query: 269 SYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALK 328
++ T ++ + ++ TDV LP ++WIK NV +G+Y V Y+D WD+L LK
Sbjct: 574 TFITSKSDMVHRFLL-KTKTDVLI-LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLK 631
Query: 329 TNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFL 365
H S DRASLI++AF L + S E L+L L
Sbjct: 632 GTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSL 668
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 96/134 (71%), Gaps = 4/134 (2%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLL 637
LA+T FEPT AR AFPCFDEP FKA F + I R+ H+++ NMP+ + V GL+
Sbjct: 183 LASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVA----EGLI 238
Query: 638 RDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDF 697
D F +V+MSTYLVAF++ D+++++ +T GV VSVYA PD + QA +AL+ + +++F
Sbjct: 239 EDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEF 298
Query: 698 YEEFFGVPYPLPKQ 711
YE++F +PYPLPKQ
Sbjct: 299 YEDYFSIPYPLPKQ 312
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 372 LPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAG 431
LP ++WIK NV +G+Y V Y+D WD+L LK H S DRASLI++AF L G
Sbjct: 597 LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIG 656
Query: 432 LVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASP-YRLFEQ----------- 479
++ L+LS YL E + +P FQ L+E P Y+L E+
Sbjct: 657 KLSIEKALDLSLYLKHETEIMP------VFQ----GLNELIPMYKLMEKRDMNEVETQFK 706
Query: 480 -YVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEK--G 536
++ +LL + W D GS E+++RS +L A + V+ ++ F W E
Sbjct: 707 AFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGN 766
Query: 537 FRIPPNLREVVYYAGIKYGGVKEWQNCWAKYN 568
+P ++ V+ G + + W ++KY
Sbjct: 767 LSLPVDVTLAVFAVGAQ--STEGWDFLYSKYQ 796
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 1 MLEYSAGQQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGK 52
+LE+ +Q+ + E L YT+++ Y L++ GFY S+Y T++G+
Sbjct: 128 VLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGE 179
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 168/337 (49%), Gaps = 57/337 (16%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVTM WWNDLWL+EGFA F+E+ V P + D F K A+ +DAL++
Sbjct: 312 HQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNS 370
Query: 115 SHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAET 174
SHP+S V +P +I +FD +SY KGA IL ML ++L ++G+ YL H Y N +
Sbjct: 371 SHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKN 430
Query: 175 KDFWSVLSK-------------------------HSNHSINVKAIMDTWSRQMGFPVIRI 209
+D W ++ ++VK +M+TW+ Q GFP+I I
Sbjct: 431 EDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITI 490
Query: 210 S-RITPQHXXXXXXXXXXXXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPL 268
+ R H Q ++ ++ G D+ Y W+VPL
Sbjct: 491 TVRGRNVHMK-----------------QEHYMKGSD--GAPDT---------GYLWHVPL 522
Query: 269 SYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALK 328
++ T ++ + + TDV LP ++WIK NV +G+Y V Y+D WD+L LK
Sbjct: 523 TFITSKSDMVHR-FLLKTKTDVLI-LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLK 580
Query: 329 TNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFL 365
H S DRASLI++AF L + S E L+L L
Sbjct: 581 GTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSL 617
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 96/134 (71%), Gaps = 4/134 (2%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLL 637
LA+T FEPT AR AFPCFDEP FKA F + I R+ H+++ NMP+ + V GL+
Sbjct: 132 LASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVA----EGLI 187
Query: 638 RDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDF 697
D F +V+MSTYLVAF++ D+++++ +T GV VSVYA PD + QA +AL+ + +++F
Sbjct: 188 EDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEF 247
Query: 698 YEEFFGVPYPLPKQ 711
YE++F +PYPLPKQ
Sbjct: 248 YEDYFSIPYPLPKQ 261
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 372 LPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAG 431
LP ++WIK NV +G+Y V Y+D WD+L LK H S DRASLI++AF L G
Sbjct: 546 LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIG 605
Query: 432 LVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASP-YRLFEQ----------- 479
++ L+LS YL E + +P FQ L+E P Y+L E+
Sbjct: 606 KLSIEKALDLSLYLKHETEIMPV------FQ----GLNELIPMYKLMEKRDMNEVETQFK 655
Query: 480 -YVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEK--G 536
++ +LL + W D GS E+++RS +L A + V+ ++ F W E
Sbjct: 656 AFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGN 715
Query: 537 FRIPPNLREVVYYAGIKYGGVKEWQNCWAKYN 568
+P ++ V+ G + + W ++KY
Sbjct: 716 LSLPVDVTLAVFAVGAQ--STEGWDFLYSKYQ 745
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 1 MLEYSAGQQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGK 52
+LE+ +Q+ + E L YT+++ Y L++ GFY S+Y T++G+
Sbjct: 77 VLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGE 128
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 168/337 (49%), Gaps = 57/337 (16%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVTM WWNDLWL+EGFA F+E+ V P + D F K A+ +DAL++
Sbjct: 321 HQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNS 379
Query: 115 SHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAET 174
SHP+S V +P +I +FD +SY KGA IL ML ++L ++G+ YL H Y N +
Sbjct: 380 SHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKN 439
Query: 175 KDFWSVLSK-------------------------HSNHSINVKAIMDTWSRQMGFPVIRI 209
+D W ++ ++VK +M+TW+ Q GFP+I I
Sbjct: 440 EDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQERVDVKTMMNTWTLQRGFPLITI 499
Query: 210 S-RITPQHXXXXXXXXXXXXMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPL 268
+ R H Q ++ ++ G D+ Y W+VPL
Sbjct: 500 TVRGRNVHMK-----------------QEHYMKGSD--GAPDT---------GYLWHVPL 531
Query: 269 SYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALK 328
++ T ++ + + TDV LP ++WIK NV +G+Y V Y+D WD+L LK
Sbjct: 532 TFITSKSDMVHR-FLLKTKTDVLI-LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLK 589
Query: 329 TNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFL 365
H S DRASLI++AF L + S E L+L L
Sbjct: 590 GTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSL 626
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 96/134 (71%), Gaps = 4/134 (2%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLL 637
LA+T FEPT AR AFPCFDEP FKA F + I R+ H+++ NMP+ + V GL+
Sbjct: 141 LASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVA----EGLI 196
Query: 638 RDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDF 697
D F +V+MSTYLVAF++ D+++++ +T GV VSVYA PD + QA +AL+ + +++F
Sbjct: 197 EDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEF 256
Query: 698 YEEFFGVPYPLPKQ 711
YE++F +PYPLPKQ
Sbjct: 257 YEDYFSIPYPLPKQ 270
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 7/202 (3%)
Query: 372 LPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAG 431
LP ++WIK NV +G+Y V Y+D WD+L LK H S DRASLI++AF L G
Sbjct: 555 LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIG 614
Query: 432 LVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRL---FEQYVKKLLTPI 488
++ L+LS YL E + +P L + + + F+ ++ +LL +
Sbjct: 615 KLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDL 674
Query: 489 SHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEK--GFRIPPNLREV 546
W D GS E+++RS++L A + V+ ++ F W E +P ++
Sbjct: 675 IDKQTWTDEGSVSERMLRSELLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA 734
Query: 547 VYYAGIKYGGVKEWQNCWAKYN 568
V+ G + + W ++KY
Sbjct: 735 VFAVGAQ--STEGWDFLYSKYQ 754
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 1 MLEYSAGQQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGK 52
+LE+ +Q+ + E L YT+++ Y L++ GFY S+Y T++G+
Sbjct: 86 VLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGE 137
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 152/295 (51%), Gaps = 45/295 (15%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFG+LVTM+WWNDLWL+E FA+F+ Y +D + P W+ F + +T AL D+L
Sbjct: 269 HQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKN 328
Query: 115 SHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAET 174
+HPI V V DP EI IFD ISY KGA+IL M+E + G R G++ YLN HK+GNAE
Sbjct: 329 THPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEG 388
Query: 175 KDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHXXXXXXXXXXXXMIEYSA 234
D W+ + S VK +M+ W + G+PVI++ R + +
Sbjct: 389 SDLWTAIEDVSGKP--VKRVMEYWIKNPGYPVIKLKRNGRK----------------ITM 430
Query: 235 TQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDVTFKL 294
QTRFLL E GR W VP++ K+ + + + D
Sbjct: 431 YQTRFLLNGEEEGR---------------WPVPVNI------KKKDGVERILLEDEASIE 469
Query: 295 PNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTL 349
+ + IK N + +GFYRV YD DA + ++ SP DR L+DD F
Sbjct: 470 ADGL--IKINADSAGFYRVLYD----DATFSDVMGHYRDLSPLDRIGLVDDLFAF 518
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 575 EPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGT 634
E + TTHFE T AR FPC D P +KA F +++ D+ + ++ NMP + +
Sbjct: 92 ENGMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEVSERKVV- 150
Query: 635 GLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHM 694
+FQ++ MSTYL+ + ++ + + + + + + D+ ++K+ L+ +
Sbjct: 151 -----EFQDTPRMSTYLLYVGIGKFRYEYE-KYRDIDLILASLKDI--RSKYPLDMARKS 202
Query: 695 MDFYEEFFGVPYPLPK 710
++FYE +FG+PY LPK
Sbjct: 203 VEFYENYFGIPYALPK 218
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 379 IKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVN 434
IK N + +GFYRV YD DA + ++ SP DR L+DD F +G ++
Sbjct: 474 IKINADSAGFYRVLYD----DATFSDVMGHYRDLSPLDRIGLVDDLFAFLLSGHID 525
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 152/295 (51%), Gaps = 45/295 (15%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFG+LVTM+WWNDLWL+E FA+F+ Y +D + P W+ F + +T AL D+L
Sbjct: 269 HQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKN 328
Query: 115 SHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAET 174
+HPI V V DP EI IFD ISY KGA+IL M+E + G R G++ YLN HK+GNAE
Sbjct: 329 THPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEG 388
Query: 175 KDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHXXXXXXXXXXXXMIEYSA 234
D W+ + S VK +M+ W + G+PVI++ R + +
Sbjct: 389 SDLWTAIEDVSGKP--VKRVMEYWIKNPGYPVIKLKRNGRK----------------ITM 430
Query: 235 TQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDVTFKL 294
QTRFLL E GR W VP++ K+ + + + D
Sbjct: 431 YQTRFLLNGEEEGR---------------WPVPVNI------KKKDGVERILLEDEASIE 469
Query: 295 PNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTL 349
+ + IK N + +GFYRV YD DA + ++ SP DR L+DD F
Sbjct: 470 ADGL--IKINADSAGFYRVLYD----DATFSDVMGHYRDLSPLDRIGLVDDLFAF 518
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 575 EPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGT 634
E + TTHF+ T AR FPC D P +KA F +++ D+ + ++ NMP + +
Sbjct: 92 ENGMITTHFQATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEVSERKVV- 150
Query: 635 GLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHM 694
+FQ++ MSTYL+ + ++ + + + + + + D+ ++K+ L+ +
Sbjct: 151 -----EFQDTPRMSTYLLYVGIGKFRYEYE-KYRDIDLILASLKDI--RSKYPLDMARKS 202
Query: 695 MDFYEEFFGVPYPLPK 710
++FYE +FG+PY LPK
Sbjct: 203 VEFYENYFGIPYALPK 218
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 379 IKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVN 434
IK N + +GFYRV YD DA + ++ SP DR L+DD F +G ++
Sbjct: 474 IKINADSAGFYRVLYD----DATFSDVMGHYRDLSPLDRIGLVDDLFAFLLSGHID 525
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 156/323 (48%), Gaps = 55/323 (17%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVTM WWND+WL+EGFA ++E V+ P D + L+ + + D+L++
Sbjct: 374 HQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQF-DDYFLNVCFEVITKDSLNS 432
Query: 115 SHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAET 174
S PIS P +I+ +FD +SY+KGA IL ML+ FLG+ + G+ YL Y NA+
Sbjct: 433 SRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKN 492
Query: 175 KDFWSVLSK-------------HSN------------HSINVKAIMDTWSRQMGFPVIRI 209
D WS LS HS+ + VK +M TW+ Q G P++ +
Sbjct: 493 DDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVV 552
Query: 210 SRITPQHXXXXXXXXXXXXMIEYSATQTRFL---LTNEPYGRNDSKLLLPRSPYDYKWYV 266
+ Q RFL +P R L R Y W++
Sbjct: 553 KQ----------------DGCSLRLQQERFLQGVFQEDPEWRA----LQER----YLWHI 588
Query: 267 PLSYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQA 326
PL+Y T + + I+ + TD T LP W+K NV+ +G+Y V Y+ H WD LI
Sbjct: 589 PLTYSTSSSNVIHRHIL-KSKTD-TLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQ 646
Query: 327 LKTNHEVFSPADRASLIDDAFTL 349
L NH + P DR LI D F L
Sbjct: 647 LNQNHTLLRPKDRVGLIHDVFQL 669
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 90/133 (67%), Gaps = 4/133 (3%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLL 637
LA T FEPT AR AFPCFDEP FKA F + I R+ HI+L NMP T + + GLL
Sbjct: 194 LAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE----LEGGLL 249
Query: 638 RDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDF 697
D F+ +V+MSTYLVA++VCD+ +++ T+ GV VS+YA PD Q +AL S ++DF
Sbjct: 250 EDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDF 309
Query: 698 YEEFFGVPYPLPK 710
YE++F + YPL K
Sbjct: 310 YEKYFDIYYPLSK 322
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 5/190 (2%)
Query: 369 TFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLS 428
T LP W+K NV+ +G+Y V Y+ H WD LI L NH + P DR LI D F L
Sbjct: 611 TLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLV 670
Query: 429 RAGLVNATVPLELSTYLLKEKD---YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLL 485
AG + L+++ YL E + + LE F H + + ++Y+ +
Sbjct: 671 GAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYF 730
Query: 486 TPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKG--FRIPPNL 543
P+ W D GS ++++RS +L A + ++++ F+ WME IP ++
Sbjct: 731 KPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDV 790
Query: 544 REVVYYAGIK 553
++VY G +
Sbjct: 791 LKIVYSVGAQ 800
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 1 MLEYSAGQQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKK 54
+L Y A +Q+ + E L Y + + + +L EGFY S+Y T G+ +
Sbjct: 139 VLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTLGGETR 192
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 155/323 (47%), Gaps = 55/323 (17%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALST 114
+QWFGNLVTM WWND+WL EGFA ++E V+ P D + L+ + + D+L++
Sbjct: 374 HQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQF-DDYFLNVCFEVITKDSLNS 432
Query: 115 SHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAET 174
S PIS P +I+ +FD +SY+KGA IL ML+ FLG+ + G+ YL Y NA+
Sbjct: 433 SRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKN 492
Query: 175 KDFWSVLSK-------------HSN------------HSINVKAIMDTWSRQMGFPVIRI 209
D WS LS HS+ + VK +M TW+ Q G P++ +
Sbjct: 493 DDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVV 552
Query: 210 SRITPQHXXXXXXXXXXXXMIEYSATQTRFL---LTNEPYGRNDSKLLLPRSPYDYKWYV 266
+ Q RFL +P R L R Y W++
Sbjct: 553 KQ----------------DGCSLRLQQERFLQGVFQEDPEWRA----LQER----YLWHI 588
Query: 267 PLSYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQA 326
PL+Y T + + I+ + TD T LP W+K NV+ +G+Y V Y+ H WD LI
Sbjct: 589 PLTYSTSSSNVIHRHIL-KSKTD-TLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQ 646
Query: 327 LKTNHEVFSPADRASLIDDAFTL 349
L NH + P DR LI D F L
Sbjct: 647 LNQNHTLLRPKDRVGLIHDVFQL 669
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 90/133 (67%), Gaps = 4/133 (3%)
Query: 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLL 637
LA T FEPT AR AFPCFDEP FKA F + I R+ HI+L NMP T + + GLL
Sbjct: 194 LAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE----LEGGLL 249
Query: 638 RDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDF 697
D F+ +V+MSTYLVA++VCD+ +++ T+ GV VS+YA PD Q +AL S ++DF
Sbjct: 250 EDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDF 309
Query: 698 YEEFFGVPYPLPK 710
YE++F + YPL K
Sbjct: 310 YEKYFDIYYPLSK 322
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 5/190 (2%)
Query: 369 TFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLS 428
T LP W+K NV+ +G+Y V Y+ H WD LI L NH + P DR LI D F L
Sbjct: 611 TLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLV 670
Query: 429 RAGLVNATVPLELSTYLLKEKD---YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLL 485
AG + L+++ YL E + + LE F H + + ++Y+ +
Sbjct: 671 GAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYF 730
Query: 486 TPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKG--FRIPPNL 543
P+ W D GS ++++RS +L A + ++++ F+ WME IP ++
Sbjct: 731 KPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDV 790
Query: 544 REVVYYAGIK 553
++VY G +
Sbjct: 791 LKIVYSVGAQ 800
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 1 MLEYSAGQQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKK 54
+L Y A +Q+ + E L Y + + + +L EGFY S+Y T G+ +
Sbjct: 139 VLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTLGGETR 192
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 372 LPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAG 431
LP ++WIK NV +G+Y V Y+D WD+L LK H S DRASLI++AF L G
Sbjct: 63 LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIG 122
Query: 432 LVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASP-YRLFEQ----------- 479
++ L+LS YL E + +P FQ L+E P Y+L E+
Sbjct: 123 KLSIEKALDLSLYLKHETEIMP------VFQ----GLNELIPMYKLMEKRDMNEVETQFK 172
Query: 480 -YVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEK--G 536
++ +LL + W D GS E+++RS +L A + V+ ++ F W E
Sbjct: 173 AFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGN 232
Query: 537 FRIPPNLREVVYYAGIKYGGVKEWQNCWAKY 567
+P ++ V+ G + + W ++KY
Sbjct: 233 LSLPVDVTLAVFAVGAQ--STEGWDFLYSKY 261
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 262 YKWYVPLSYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWD 321
Y W+VPL++ T ++ + ++ TDV LP ++WIK NV +G+Y V Y+D WD
Sbjct: 33 YLWHVPLTFITSKSDMVHRFLL-KTKTDVLI-LPEEVEWIKFNVGMNGYYIVHYEDDGWD 90
Query: 322 ALIQALKTNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFL 365
+L LK H S DRASLI++AF L + S E L+L L
Sbjct: 91 SLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSL 134
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLE------YYGVDHVMPGWNMMDQFI--LDKTQQA 106
+ W GNLVT W DLWL+EGF S++E +G D +M+Q + D +
Sbjct: 304 HSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRA-----VMEQALGAQDLNAEI 358
Query: 107 LGLDALSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNT 166
L LDA T I + DP + F + Y KG L LE+ G+ A + +Y ++
Sbjct: 359 LELDASDTQLYIDLKGRDP---DDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDS 415
Query: 167 HKYGNAETKDF 177
H + + T +F
Sbjct: 416 HAFQSLGTDNF 426
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 11/158 (6%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEY-YGVDHVMPGWNMMDQFILDKTQQALGL--DA 111
+ W GN VT R W L L EG F + + D N ++ +T + L DA
Sbjct: 301 HNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV---RTMRGLQFAEDA 357
Query: 112 LSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171
+HPI + +E+ + Y KGA ++ M+ LG+ + G+ Y H
Sbjct: 358 SPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSA 415
Query: 172 AETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRI 209
A DF + SN + + W Q G P++ +
Sbjct: 416 ATCDDFVQAMEDASNVDL---SHFRRWYSQSGTPIVTV 450
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 11/158 (6%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEY-YGVDHVMPGWNMMDQFILDKTQQALGL--DA 111
+ W GN VT R W L L EG F + + D N ++ +T + L DA
Sbjct: 322 HNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV---RTMRGLQFAEDA 378
Query: 112 LSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171
+HPI + +E+ + Y KGA ++ M+ LG+ + G+ Y H
Sbjct: 379 SPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSA 436
Query: 172 AETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRI 209
A DF + SN + + W Q G P++ +
Sbjct: 437 ATCDDFVQAMEDASNVDL---SHFRRWYSQSGTPIVTV 471
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 11/158 (6%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEY-YGVDHVMPGWNMMDQFILDKTQQALGL--DA 111
+ W GN VT R W L L EG F + + D N ++ +T + L DA
Sbjct: 322 HNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV---RTMRGLQFAEDA 378
Query: 112 LSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171
+HPI + +E+ + Y KGA ++ M+ LG+ + G+ Y H
Sbjct: 379 SPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSA 436
Query: 172 AETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRI 209
A DF + SN + + W Q G P++ +
Sbjct: 437 ATCDDFVQAMEDASNVDL---SHFRRWYSQSGTPIVTV 471
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV----------MPGWNMMDQFILDKTQ 104
+ W GNLVT + W+ WL+EG +LE + + + GW +
Sbjct: 299 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQN------- 351
Query: 105 QALGLDALSTSHPISVTVHDPVEIE--AIFDTISYSKGAAILYMLEKFLGQGTLRAG-LN 161
+ +HP + V D +I+ + ++ Y KG A+L+ LE+ LG + G L
Sbjct: 352 ---SVKTFGETHPFTKLVVDLTDIDPNVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLK 408
Query: 162 DYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMD--TWSRQMGFPVIR 208
Y+ Y + T D+ L + ++V +D W G P I+
Sbjct: 409 AYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIK 457
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV----------MPGWNMMDQFILDKTQ 104
+ W GNLVT + W+ WL+EG +LE + + + GW +
Sbjct: 305 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQN------- 357
Query: 105 QALGLDALSTSHPISVTVHDPVEI--EAIFDTISYSKGAAILYMLEKFLGQGTLRAG-LN 161
+ +HP + V D +I + + ++ Y KG A+L+ LE+ LG + G L
Sbjct: 358 ---SVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLK 414
Query: 162 DYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMD--TWSRQMGFPVIR 208
Y+ Y + T D+ L + ++V +D W G P I+
Sbjct: 415 AYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIK 463
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV----------MPGWNMMDQFILDKTQ 104
+ W GNLVT + W+ WL+EG +LE + + + GW +
Sbjct: 305 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQN------- 357
Query: 105 QALGLDALSTSHPISVTVHDPVEI--EAIFDTISYSKGAAILYMLEKFLGQGTLRAG-LN 161
+ +HP + V D +I + + ++ Y KG A+L+ LE+ LG + G L
Sbjct: 358 ---SVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLK 414
Query: 162 DYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMD--TWSRQMGFPVIR 208
Y+ Y + T D+ L + ++V +D W G P I+
Sbjct: 415 AYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIK 463
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV----------MPGWNMMDQFILDKTQ 104
+ W GNLVT + W+ WL+EG +LE + + + GW +
Sbjct: 299 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQN------- 351
Query: 105 QALGLDALSTSHPISVTVHDPVEI--EAIFDTISYSKGAAILYMLEKFLGQGTLRAG-LN 161
+ +HP + V D +I + + ++ Y KG A+L+ LE+ LG + G L
Sbjct: 352 ---SVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLK 408
Query: 162 DYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMD--TWSRQMGFPVIR 208
Y+ Y + T D+ L + ++V +D W G P I+
Sbjct: 409 AYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIK 457
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV----------MPGWNMMDQFILDKTQ 104
+ W GNLVT + W+ WL+EG +LE + + + GW +
Sbjct: 299 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQN------- 351
Query: 105 QALGLDALSTSHPISVTVHDPVEI--EAIFDTISYSKGAAILYMLEKFLGQGTLRAG-LN 161
+ +HP + V D +I + + ++ Y KG A+L+ LE+ LG + G L
Sbjct: 352 ---SVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLK 408
Query: 162 DYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMD--TWSRQMGFPVIR 208
Y+ Y + T D+ L + ++V +D W G P I+
Sbjct: 409 AYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIK 457
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV----------MPGWNMMDQFILDKTQ 104
+ W GNLVT + W+ WL+EG +LE + + + GW +
Sbjct: 297 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQN------- 349
Query: 105 QALGLDALSTSHPISVTVHDPVEI--EAIFDTISYSKGAAILYMLEKFLGQGTLRAG-LN 161
+ +HP + V D +I + + ++ Y KG A+L+ LE+ LG + G L
Sbjct: 350 ---SVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLK 406
Query: 162 DYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMD--TWSRQMGFPVIR 208
Y+ Y + T D+ L + ++V +D W G P I+
Sbjct: 407 AYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIK 455
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV----------MPGWNMMDQFILDKTQ 104
+ W GNLVT + W+ WL+EG +LE + + + GW +
Sbjct: 300 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQN------- 352
Query: 105 QALGLDALSTSHPISVTVHDPVEI--EAIFDTISYSKGAAILYMLEKFLGQGTLRAG-LN 161
+ +HP + V D +I + + ++ Y KG A+L+ LE+ LG + G L
Sbjct: 353 ---SVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLK 409
Query: 162 DYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMD--TWSRQMGFPVIR 208
Y+ Y + T D+ L + ++V +D W G P I+
Sbjct: 410 AYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIK 458
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV----------MPGWNMMDQFILDKTQ 104
+ W GNLVT + W+ WL+EG +LE + + + GW +
Sbjct: 300 HSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQN------- 352
Query: 105 QALGLDALSTSHPISVTVHDPVEI--EAIFDTISYSKGAAILYMLEKFLGQGTLRAG-LN 161
+ +HP + V D +I + + ++ Y KG A+L+ LE+ LG + G L
Sbjct: 353 ---SVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLK 409
Query: 162 DYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMD--TWSRQMGFPVIR 208
Y+ Y + T D+ L + ++V +D W G P I+
Sbjct: 410 AYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIK 458
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 10/157 (6%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLE-YYGVDHVMPGWNMMDQFILDKTQQALGLDALS 113
+Q+ GN VT+R W L L EG E + + + L ++ Q L D+
Sbjct: 306 HQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLE-DSSP 364
Query: 114 TSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAE 173
SHPI + V +E + T Y KG+ ++ M LG+ + G + Y+ + A
Sbjct: 365 LSHPIRPESY--VSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTAT 422
Query: 174 TKDFWSVLS-----KHSNHSINVKAIMDTWSRQMGFP 205
+DF + K +++S N+ + W Q G P
Sbjct: 423 CEDFNYAMEQAYKMKKADNSANLNQYL-LWFSQSGTP 458
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 10/157 (6%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLE-YYGVDHVMPGWNMMDQFILDKTQQALGLDALS 113
+Q+ GN VT+R W L L EG E + + + L ++ Q L D+
Sbjct: 306 HQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLE-DSSP 364
Query: 114 TSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAE 173
SHPI + V +E + T Y KG+ ++ M LG+ + G + Y+ + A
Sbjct: 365 LSHPIRPESY--VSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTAT 422
Query: 174 TKDFWSVLS-----KHSNHSINVKAIMDTWSRQMGFP 205
+DF + K +++S N+ + W Q G P
Sbjct: 423 CEDFNYAMEQAYKMKKADNSANLNQYL-LWFSQSGTP 458
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 10/157 (6%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLE-YYGVDHVMPGWNMMDQFILDKTQQALGLDALS 113
+Q+ GN VT+R W L L EG E + + + L ++ Q L D+
Sbjct: 305 HQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLE-DSSP 363
Query: 114 TSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAE 173
SHPI + V +E + T Y KG+ ++ M LG+ + G + Y+ + A
Sbjct: 364 LSHPIRPESY--VSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTAT 421
Query: 174 TKDFWSVLS-----KHSNHSINVKAIMDTWSRQMGFP 205
+DF + K +++S N+ + W Q G P
Sbjct: 422 CEDFNYAMEQAYKMKKADNSANLNQYL-LWFSQSGTP 457
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 23/111 (20%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLE--YYGVDHVMP--------GWNMMDQFILDKTQ 104
+ W GNLVT WN WL+EG+ +LE G H P GW+ +
Sbjct: 305 HSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQN------- 357
Query: 105 QALGLDALSTSHPISVTV---HDPVEIEAIFDTISYSKGAAILYMLEKFLG 152
+D++ S V +D + + F T+ Y KG +L+ LE LG
Sbjct: 358 ---SIDSMKDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILG 405
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 575 EPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGT 634
+PY+ + E +ARS FPCFD P K+ F SI + + I T T
Sbjct: 139 KPYVFS-QLEAIHARSLFPCFDTPSVKSTFTASI-ESPLPVVFSGIRIEDTS-----KDT 191
Query: 635 GLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPP 678
+ R F++ V + YL+ D + G +VY P
Sbjct: 192 NIYR--FEQKVPIPAYLIGIASGDLSS----APIGPRSTVYTEP 229
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 23/111 (20%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLE--YYGVDHVMP--------GWNMMDQFILDKTQ 104
+ W GNLVT WN WL+EG+ +LE G H P GW+ +
Sbjct: 305 HSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQN------- 357
Query: 105 QALGLDALSTSHPISVTV---HDPVEIEAIFDTISYSKGAAILYMLEKFLG 152
+D++ S V +D + + F T+ Y KG +L+ LE LG
Sbjct: 358 ---SIDSMKDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILG 405
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 575 EPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGT 634
+PY+ + E +ARS FPCFD P K+ F SI + + I T T
Sbjct: 139 KPYVFS-QLEAIHARSLFPCFDTPSVKSTFTASI-ESPLPVVFSGIRIEDTS-----KDT 191
Query: 635 GLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPP 678
+ R F++ V + YL+ D + G +VY P
Sbjct: 192 NIYR--FEQKVPIPAYLIGIASGDLSS----APIGPRSTVYTEP 229
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 7/154 (4%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLEY-YGVDHVMPGWNMMDQFILDKTQQALGLDALS 113
+ W GN VT R W L L EG F + + D ++ L + Q DA
Sbjct: 297 HNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLRQHQ-FPEDAGP 355
Query: 114 TSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAE 173
T+HP+ ++ E + Y KGA ++ LG+ + G Y H G A
Sbjct: 356 TAHPVRPASYE--EXNNFYTXTVYEKGAEVVRXYHTLLGEEGFQKGXKLYFQRHD-GQAV 412
Query: 174 TKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVI 207
T D + +N IN+ W Q G PV+
Sbjct: 413 TCDDFRAAXADAN-GINLDQFA-LWYSQAGTPVL 444
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 10/157 (6%)
Query: 55 YQWFGNLVTMRWWNDLWLSEGFASFLE-YYGVDHVMPGWNMMDQFILDKTQQALGLDALS 113
+Q+ GN VT+R W L L EG E + + + L ++ Q L D+
Sbjct: 305 HQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLE-DSSP 363
Query: 114 TSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAE 173
SHPI + V + + T Y KG+ ++ M LG+ + G + Y+ + A
Sbjct: 364 LSHPIRPESY--VSMANFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTAT 421
Query: 174 TKDFWSVLS-----KHSNHSINVKAIMDTWSRQMGFP 205
+DF + K +++S N+ + W Q G P
Sbjct: 422 CEDFNYAMEQAYKMKKADNSANLNQYL-LWFSQSGTP 457
>pdb|3REN|A Chain A, Cpf_2247, A Novel Alpha-Amylase From Clostridium
Perfringens
pdb|3REN|B Chain B, Cpf_2247, A Novel Alpha-Amylase From Clostridium
Perfringens
Length = 350
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 35/141 (24%)
Query: 266 VPL---SYYTDQTGYKEQE--------IVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVT 314
VPL +Y + Y E+E IV +N + +SIKWIK + GF T
Sbjct: 209 VPLYRKVFYEETQKYDEEENVDFLLSTIVILNRIEAGENEESSIKWIKEKFKKDGFLVAT 268
Query: 315 YDDHLWDALIQ----------ALKTNH----EVFSPA----------DRASLIDDAFTLS 350
Y+ DA Q AL N+ E+F+ A ++ S++ F
Sbjct: 269 YNGKNGDATSQIESPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLYGGFGDE 328
Query: 351 RLYSFSTEDNLNLFLSPVTFK 371
+ S + DNLN L+ +K
Sbjct: 329 KTNSVYSFDNLNALLAFQKYK 349
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 355 FSTEDNLNLFLSPVTF--------KLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALK 406
+ E+N++ LS + +SIKWIK + GF TY+ DA Q
Sbjct: 223 YDEEENVDFLLSTIVILNRIEAGENEESSIKWIKEKFKKDGFLVATYNGKNGDATSQ--- 279
Query: 407 TNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWA 455
+ SP+ +++ A + L N + +L Y +K KD V +
Sbjct: 280 ----IESPSIYSNVALIANYIGDKELFNKAID-KLKYYQIKNKDSVLYG 323
>pdb|1PWU|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWU|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWW|A Chain A, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc.
pdb|1PWW|B Chain B, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc
Length = 776
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 451 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPIS 489
Y W +H+QHWS SLSE L KKL PI
Sbjct: 268 YEKWEKIKQHYQHWSDSLSEEGRGLL-----KKLQIPIE 301
>pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
pdb|1PWP|A Chain A, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWP|B Chain B, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWQ|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWQ|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWV|A Chain A, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1PWV|B Chain B, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1ZXV|A Chain A, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid.
pdb|1ZXV|B Chain B, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid
Length = 776
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 451 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPIS 489
Y W +H+QHWS SLSE L KKL PI
Sbjct: 268 YEKWEKIKQHYQHWSDSLSEEGRGLL-----KKLQIPIE 301
>pdb|4DV8|A Chain A, Anthrax Lethal Factor Metalloproteinase In Complex With
The Hydroxamic Acid Based Small Molecule Pt8421
Length = 526
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 451 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPI 488
Y W +H+QHWS SLSE L KKL PI
Sbjct: 18 YEKWEKIKQHYQHWSDSLSEEGRGLL-----KKLQIPI 50
>pdb|1YQY|A Chain A, Structure Of B. Anthrax Lethal Factor In Complex With A
Hydroxamate Inhibitor
Length = 523
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 451 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPI 488
Y W +H+QHWS SLSE +KKL PI
Sbjct: 11 YEKWEKIKQHYQHWSDSLSEEG-----RGLLKKLQIPI 43
>pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
pdb|3ISL|B Chain B, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
Length = 416
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 308 SGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDA------FTLSRLYSFSTEDNL 361
SG +TY++ + D + K + + ADRA+L + F LS+L + +E L
Sbjct: 204 SGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRL 263
Query: 362 NLFLSPVT--FKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQAL 405
N T + L ++ + ++ F R + + A I+A+
Sbjct: 264 NHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM 309
>pdb|2P91|A Chain A, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|B Chain B, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|C Chain C, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|D Chain D, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
Length = 285
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 80 LEYYGVDHVMPGWNMMD--QFILDKTQQALGLDALSTSHPISVTVHDPVEIEAIFDTISY 137
L YYG + V+P +N+M + L+ T + L D H I+ PV+ A + +
Sbjct: 159 LSYYGAEKVVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGF 218
>pdb|1TFF|A Chain A, Structure Of Otubain-2
Length = 234
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 376 IKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNA 435
++ ++ + + S +V D D ++Q L+ L+ AF +RA
Sbjct: 106 VELVEKDGSVSSLLKVFNDQSASDHIVQFLR-------------LLTSAFIRNRADFFRH 152
Query: 436 TVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHI 492
+ E + P AT +H Q T+LS+A L +YV ++ T ++HH+
Sbjct: 153 FIDEEXDIKDFCTHEVEPXATECDHIQ--ITALSQALSIALQVEYVDEMDTALNHHV 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,883,959
Number of Sequences: 62578
Number of extensions: 936570
Number of successful extensions: 2174
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2012
Number of HSP's gapped (non-prelim): 95
length of query: 711
length of database: 14,973,337
effective HSP length: 106
effective length of query: 605
effective length of database: 8,340,069
effective search space: 5045741745
effective search space used: 5045741745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)