Query psy14860
Match_columns 711
No_of_seqs 367 out of 3214
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:38:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046|consensus 100.0 2.5E-89 5.5E-94 809.5 28.8 523 2-647 276-809 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 1.4E-73 3E-78 676.4 28.5 510 2-647 241-767 (831)
3 COG0308 PepN Aminopeptidase N 100.0 8.9E-50 1.9E-54 473.0 26.3 497 17-642 275-788 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 5.4E-43 1.2E-47 410.3 37.5 310 2-343 235-564 (863)
5 PRK14015 pepN aminopeptidase N 100.0 2.5E-42 5.3E-47 405.9 38.7 308 3-343 249-576 (875)
6 PF11838 ERAP1_C: ERAP1-like C 100.0 1.1E-39 2.4E-44 350.3 4.5 256 378-648 1-271 (324)
7 TIGR02411 leuko_A4_hydro leuko 100.0 3.4E-36 7.4E-41 344.1 12.6 204 2-212 239-453 (601)
8 KOG1047|consensus 99.9 1.5E-25 3.2E-30 239.1 10.6 187 17-210 265-460 (613)
9 PF01433 Peptidase_M1: Peptida 99.9 3.3E-24 7.1E-29 236.4 1.5 138 3-140 248-390 (390)
10 KOG1046|consensus 99.9 1.8E-22 4E-27 240.2 10.6 135 573-711 149-283 (882)
11 TIGR02412 pepN_strep_liv amino 99.8 7.9E-21 1.7E-25 226.4 10.7 131 575-711 116-248 (831)
12 PF01433 Peptidase_M1: Peptida 99.8 1.9E-20 4.2E-25 206.4 10.8 136 572-711 119-254 (390)
13 PRK14015 pepN aminopeptidase N 99.8 5.5E-19 1.2E-23 208.9 11.9 130 578-711 120-255 (875)
14 TIGR02414 pepN_proteo aminopep 99.8 1E-18 2.3E-23 206.0 11.2 130 578-711 107-242 (863)
15 COG0308 PepN Aminopeptidase N 99.7 5.5E-18 1.2E-22 202.1 10.9 158 547-710 106-266 (859)
16 TIGR02411 leuko_A4_hydro leuko 99.7 1.6E-17 3.4E-22 190.8 8.6 126 573-711 120-246 (601)
17 KOG1047|consensus 99.2 1.2E-11 2.6E-16 133.3 3.5 127 573-710 125-254 (613)
18 PF13485 Peptidase_MA_2: Pepti 99.1 4.7E-11 1E-15 109.5 6.0 103 46-163 26-128 (128)
19 PF11838 ERAP1_C: ERAP1-like C 98.7 5E-08 1.1E-12 104.7 11.6 64 300-365 1-64 (324)
20 KOG1932|consensus 98.6 1.6E-07 3.6E-12 108.9 10.5 152 43-214 339-508 (1180)
21 KOG1932|consensus 98.3 8.1E-07 1.8E-11 103.3 7.4 128 577-709 173-301 (1180)
22 COG3975 Predicted protease wit 97.6 0.00045 9.7E-09 75.6 12.0 156 47-209 249-434 (558)
23 PF10460 Peptidase_M30: Peptid 97.1 0.003 6.5E-08 67.7 10.5 167 19-202 112-285 (366)
24 PF07607 DUF1570: Protein of u 95.6 0.0058 1.3E-07 55.8 1.8 39 47-85 3-43 (128)
25 PF11940 DUF3458: Domain of un 94.2 2.8 6E-05 45.7 17.9 99 230-343 5-110 (367)
26 PF05299 Peptidase_M61: M61 gl 92.8 0.062 1.3E-06 48.7 1.9 43 46-88 5-58 (122)
27 PF10023 DUF2265: Predicted am 85.4 1 2.2E-05 47.9 4.4 37 46-88 166-202 (337)
28 PF12725 DUF3810: Protein of u 85.2 1.2 2.6E-05 47.6 5.0 59 15-87 166-226 (318)
29 PF04450 BSP: Peptidase of pla 73.2 2.8 6E-05 41.8 2.8 107 45-196 96-203 (205)
30 COG4324 Predicted aminopeptida 68.8 5.2 0.00011 40.6 3.6 36 47-88 199-234 (376)
31 PHA02456 zinc metallopeptidase 59.7 6 0.00013 34.6 1.8 11 47-57 81-91 (141)
32 PF12315 DUF3633: Protein of u 51.6 21 0.00045 35.4 4.3 39 47-87 95-133 (212)
33 PF10026 DUF2268: Predicted Zn 48.7 12 0.00027 36.9 2.3 43 47-89 67-113 (195)
34 PF13574 Reprolysin_2: Metallo 40.8 14 0.0003 35.8 1.3 12 46-57 112-123 (173)
35 KOG2661|consensus 33.8 28 0.00062 36.8 2.3 22 39-60 269-290 (424)
36 PF08325 WLM: WLM domain; Int 33.4 31 0.00068 33.8 2.4 14 47-60 84-97 (186)
37 PF06114 DUF955: Domain of unk 32.3 15 0.00032 32.4 -0.1 18 46-63 43-60 (122)
38 COG2719 SpoVR Uncharacterized 30.8 84 0.0018 34.7 5.2 51 48-104 252-302 (495)
39 PF10263 SprT-like: SprT-like 30.7 26 0.00057 33.0 1.4 14 46-59 61-74 (157)
40 smart00731 SprT SprT homologue 29.8 27 0.00057 32.8 1.2 13 47-59 61-73 (146)
41 COG0501 HtpX Zn-dependent prot 25.2 32 0.00069 36.2 1.0 38 23-63 138-175 (302)
42 PF13688 Reprolysin_5: Metallo 24.3 38 0.00083 33.1 1.3 12 46-57 143-154 (196)
43 PF03272 Enhancin: Viral enhan 24.0 3.1E+02 0.0067 33.3 8.9 129 47-198 238-377 (775)
44 PF13699 DUF4157: Domain of un 22.1 44 0.00096 27.8 1.0 13 45-57 61-73 (79)
45 PF12174 RST: RCD1-SRO-TAF4 (R 22.0 2.2E+02 0.0047 23.2 5.0 46 141-187 12-57 (70)
46 PRK04860 hypothetical protein; 21.5 49 0.0011 31.6 1.3 12 46-57 64-75 (160)
47 PF08822 DUF1804: Protein of u 21.2 4.3E+02 0.0092 25.4 7.5 34 399-433 80-118 (165)
48 PF01447 Peptidase_M4: Thermol 21.2 48 0.001 31.4 1.2 11 46-56 136-146 (150)
49 TIGR02574 stabl_TIGR02574 puta 20.2 3.1E+02 0.0068 21.5 5.5 51 411-461 2-60 (63)
No 1
>KOG1046|consensus
Probab=100.00 E-value=2.5e-89 Score=809.49 Aligned_cols=523 Identities=38% Similarity=0.733 Sum_probs=475.7
Q ss_pred ccccchhHHHHHHHhh-hccccccceeeeecccccCCCCCcccc----hhhhHHHHHHhhhcCCccccCCCChhhhhHhH
Q psy14860 2 LEYSAGQQVYIEFKEN-LRKKTNYTLILRYYTRLNQDMEGFYLS----SYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGF 76 (711)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~~~en~gl~~~~~~~~~~~~~~~~~~----~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGf 76 (711)
++||.++.-++|.|.- .||||||||++.....+.-+......+ -..+||||+|||||||+|||+||+|+||||||
T Consensus 276 i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGf 355 (882)
T KOG1046|consen 276 IPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGF 355 (882)
T ss_pred CCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccH
Confidence 5788888888888864 588999999997777777653222222 22699999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhccccCCCCCceeccCChhhHhhccccccccchHHHHHHHHHhhChHHH
Q psy14860 77 ASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTL 156 (711)
Q Consensus 77 A~y~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~s~pi~~~v~~~~~i~~~f~~i~Y~KGa~vl~ML~~~lG~~~F 156 (711)
|+|+++++++..+|+|.++++|+...+..++..|+..++|||+.++.++.+|.++||.|+|.||++|||||+.++|++.|
T Consensus 356 At~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F 435 (882)
T KOG1046|consen 356 ATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVF 435 (882)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHhhcCCCccHHHHHhhhhcccCcceEEEEecCCCCCCCCCCCCCCCCCeeeEEEE
Q psy14860 157 RAGLNDYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQ 236 (711)
Q Consensus 157 ~~~l~~yl~~~~~~~a~~~df~~~l~~~~~~~~~l~~~~~~W~~q~G~P~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~Q 236 (711)
++||+.||++|+|+|++++|||++|+...+ .|++++|++|+.|+|||+|+|+++++ .++++|
T Consensus 436 ~~gi~~yL~~~~y~na~~~DLw~~l~~~~~--~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----------------~~~l~Q 497 (882)
T KOG1046|consen 436 RKGLRSYLKKHQYSNAKTEDLWDALEEGSG--LDVSELMDTWTKQMGYPVVTVERNGD----------------SLTLTQ 497 (882)
T ss_pred HHHHHHHHHHhccCCCCchhHHHHHhccCC--CCHHHHHhhhhcCCCCceEEEEecCC----------------EEEEeh
Confidence 999999999999999999999999995555 49999999999999999999999888 789999
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEcCCCceeeEEEEecCceeEEecCCCCceEEEccCCeeeeeeecC
Q psy14860 237 TRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYD 316 (711)
Q Consensus 237 ~rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~~gyyrv~yd 316 (711)
+||+...+. .+.+++|+||++|.+.+.+.. ...++..++.++.++..++||++|.++.||
T Consensus 498 ~rf~~~~~~------------~~~~~~w~iPl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~wi~~N~~~~g~------ 557 (882)
T KOG1046|consen 498 ERFLSDPDP------------SEDNYLWWIPLTYTTSGSGSV--PKFWLSSKSTTIKLPESDQWIKVNLEQTGY------ 557 (882)
T ss_pred hhhccCCCc------------cccCcccceeEEEEcCCCCcc--ceeeecCCCcceecCCCCeEEEEeCCcceE------
Confidence 999987542 346789999999998765543 456677777778887766899999999999
Q ss_pred hhhHHHHHHHHhcccccCChhhhhhhHHHHHHhhhhcccCccccccccccccccccCCccceeeeccccccceEeecCHh
Q psy14860 317 DHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYRVTYDDH 396 (711)
Q Consensus 317 ~~~~~~l~~~l~~~~~~~~~~~r~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yRv~Yd~~ 396 (711)
|||+||++
T Consensus 558 ------------------------------------------------------------------------yRV~Yd~~ 565 (882)
T KOG1046|consen 558 ------------------------------------------------------------------------YRVNYDDE 565 (882)
T ss_pred ------------------------------------------------------------------------EEEEeCHH
Confidence 99999999
Q ss_pred HHHHHHHHHhhCCCCCChhhHhhHHHHHHHHHHcCCcchhhHHHHHHhhhhCCCcccHHHHHHhHHHHHHhccCCCchhH
Q psy14860 397 LWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASPYRL 476 (711)
Q Consensus 397 ~w~~l~~~l~~~~~~~~~~~r~~li~D~~~l~~~g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~i~~~l~~~~~~~~ 476 (711)
+|..|+++|.. +..|++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||.+++..|..+.. +...+.+..
T Consensus 566 ~w~~l~~~l~~-~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 643 (882)
T KOG1046|consen 566 NWALLIEQLKN-HESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LEDTEIYSK 643 (882)
T ss_pred HHHHHHHHHhh-cCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-cccchHHHH
Confidence 99999999999 8999999999999999999999999999999999999999999999999999999999 778899999
Q ss_pred HHHHHHHHHHHHhccccccccCCH-HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhcCCCCCCCccceeeeeeeecC
Q psy14860 477 FEQYVKKLLTPISHHIGWEDTGSH-LEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIKYG 555 (711)
Q Consensus 477 ~~~y~~~l~~~~~~~lg~~~~~s~-~~~~lR~~il~~aC~~g~~~ci~~A~~~F~~~~~~~~~ip~~lr~~Vy~~gi~~g 555 (711)
++.|+++++.|.++++||.++... ....+|..++..||..|+++|++.|.++|.+|+..++.||+++|..|||.++++|
T Consensus 644 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~~~~ip~~lr~~vy~~~~~~g 723 (882)
T KOG1046|consen 644 FKEFVKKLILPIFEKLGWSDGADSSLDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAGTNPIPPDLREVVYCTAVQFG 723 (882)
T ss_pred HHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCCChhhhhhhhhHHHHhc
Confidence 999999999999999999885544 8899999999999999999999999999999999889999999999999999999
Q ss_pred ChhhhHHHHHHhccCCCCCCCceeeeccccccccccccCCCCHHhHhhhhc-----eeeeecceeEEeeeceeeecccCc
Q psy14860 556 GVKEWQNCWAKYNSTRVPSEPYLATTHFEPTYARSAFPCFDEPQFKARFKM-----SIFRDRFHISLFNMPITSTDDVGF 630 (711)
Q Consensus 556 ~~~~w~~l~~~y~~s~~~~ek~~l~Tq~ep~~A~~~lpC~d~P~lka~~l~-----sii~~~~~~~vsn~~~~~~~~~g~ 630 (711)
+++.|+.++++|+++....++..+ ..+++|++++..+.+++. ..+++++...++.+ ++.++.|.
T Consensus 724 ~~~~w~~~~~~y~~~~~~~e~~~~---------l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~--~~~~~~g~ 792 (882)
T KOG1046|consen 724 TEEDWEQLLELYKKETTAAEKRKL---------LNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQG--ISGNPRGV 792 (882)
T ss_pred CHhHHHHHHHHHhccccHHHHHHH---------HHHhccCccHHHHHHHHHHhcccccccchhHHHHHHH--HhcCcccH
Confidence 999999999999999888888888 999999999999988883 45777787777766 67777899
Q ss_pred cccccceEEEeeccccc
Q psy14860 631 YMGTGLLRDDFQESVEM 647 (711)
Q Consensus 631 ~~~w~~~~~~f~~~~~~ 647 (711)
..+|+|+..||+.+.++
T Consensus 793 ~~a~~~~~~n~~~l~~~ 809 (882)
T KOG1046|consen 793 ELAWKFLQDNWKELLNR 809 (882)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999887
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.4e-73 Score=676.43 Aligned_cols=510 Identities=19% Similarity=0.215 Sum_probs=406.5
Q ss_pred ccccchhHHHHHHHh-hhccccccceeeeecccccCCCCC--cccchhhhHHHHHHhhhcCCccccCCCChhhhhHhHHH
Q psy14860 2 LEYSAGQQVYIEFKE-NLRKKTNYTLILRYYTRLNQDMEG--FYLSSYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFAS 78 (711)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~en~gl~~~~~~~~~~~~~~--~~~~~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~ 78 (711)
++||.++--.++.|. ..|||||+|+|+.....+..+... .......++|||+|||||||+|||+||+++|||||||+
T Consensus 241 ~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAt 320 (831)
T TIGR02412 241 YPYPFKKYDQIFVPEFNAGAMENAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAE 320 (831)
T ss_pred CCCCcccCCEEEcCCCCCCcccccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHH
Confidence 367776666566664 568999999998766644332111 01122369999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCccHHHHHHHHHHHHHhhccccCCCCCceeccCChhhHhhccccccccchHHHHHHHHHhhChHHHHH
Q psy14860 79 FLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRA 158 (711)
Q Consensus 79 y~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~s~pi~~~v~~~~~i~~~f~~i~Y~KGa~vl~ML~~~lG~~~F~~ 158 (711)
|++++++++..|+|..+.+|.......++..|+..++||+..++.++.++...|+.|+|.||++|||||+.+||+++|++
T Consensus 321 y~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~ 400 (831)
T TIGR02412 321 YMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFA 400 (831)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHH
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCHHHHHHHHHhhcCCCccHHHHHhhhhcccCcceEEEEecCCCCCCCCCCCCCCCCCeeeE-EEEe
Q psy14860 159 GLNDYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYS-ATQT 237 (711)
Q Consensus 159 ~l~~yl~~~~~~~a~~~df~~~l~~~~~~~~~l~~~~~~W~~q~G~P~v~v~~~~~~~~~~~~~~~~~~~~~~~~-l~Q~ 237 (711)
|||.|+++|+|+|++++|||++++++++. ++++||++|++|+|+|+|+|+++++. + .++ +.|.
T Consensus 401 glr~Yl~~~~~~nat~~Dl~~~l~~~sg~--dl~~~~~~W~~~~G~P~l~v~~~~~~------------~--~~~~~~~~ 464 (831)
T TIGR02412 401 GVNAYFKRHAFGNATLDDLIDSLAKASGR--DLSAWSDAWLETAGVNTLTPEITTDG------------G--VVSALYPE 464 (831)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHcCCCCceEEEEEEECC------------C--eEEEEEEe
Confidence 99999999999999999999999999997 99999999999999999999986540 0 332 1222
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEcCCCcee---eEEEEecCceeEEe-cC--CCCceEEEccCCeeee
Q psy14860 238 RFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKE---QEIVWMNMTDVTFK-LP--NSIKWIKANVNQSGFY 311 (711)
Q Consensus 238 rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~~~~~~~~~---~~~~~~~~~~~~~~-~~--~~~~~i~~N~~~~gyy 311 (711)
+ +. + ...|+|||++....++... ...+.+......+. +. .+++||++|.++.||
T Consensus 465 ~-----~~------------~--~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~gy- 524 (831)
T TIGR02412 465 S-----SG------------P--PRPHRIAIGLYDLDRDDLRRTTLVPLTISGERTAVPQLVGKRAPALVLLNDDDLTY- 524 (831)
T ss_pred c-----CC------------C--CCCeeEEEeeeecCCCcceeeeEEEEEEecCceeehhhcCCCCCCEEEEeCCCcEE-
Confidence 1 11 0 1359999998654333211 11122322222221 11 245788888888888
Q ss_pred eeecChhhHHHHHHHHhcccccCChhhhhhhHHHHHHhhhhcccCccccccccccccccccCCccceeeeccccccceEe
Q psy14860 312 RVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYRV 391 (711)
Q Consensus 312 rv~yd~~~~~~l~~~l~~~~~~~~~~~r~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yRv 391 (711)
|||
T Consensus 525 -----------------------------------------------------------------------------yrv 527 (831)
T TIGR02412 525 -----------------------------------------------------------------------------AKV 527 (831)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 999
Q ss_pred ecCHhHHHHHHHHHhhCCCCCChhhHhhHHHHHHHHHHcCCcchhhHHHHH-HhhhhCCCcccHHHHHHhHH-HHHHhcc
Q psy14860 392 TYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELS-TYLLKEKDYVPWATALEHFQ-HWSTSLS 469 (711)
Q Consensus 392 ~Yd~~~w~~l~~~l~~~~~~~~~~~r~~li~D~~~l~~~g~l~~~~~l~l~-~~l~~e~~~~~w~~~~~~l~-~i~~~l~ 469 (711)
+||+++|..|+++|... .++.+|++|++|+|+|+++|+++++.+|+++ .||++|++|.||..++..+. .+..++.
T Consensus 528 ~yd~~~~~~l~~~l~~~---~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~ 604 (831)
T TIGR02412 528 RLDPTSFDTVLAALSKL---PDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYA 604 (831)
T ss_pred ECCHHHHHHHHHHhhhC---CChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhC
Confidence 99999999999998542 3899999999999999999999999999966 89999999999999999999 8988887
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhcCCCCCCCccceeee
Q psy14860 470 EASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYY 549 (711)
Q Consensus 470 ~~~~~~~~~~y~~~l~~~~~~~lg~~~~~s~~~~~lR~~il~~aC~~g~~~ci~~A~~~F~~~~~~~~~ip~~lr~~Vy~ 549 (711)
..+.+..+++|+..++.+.... ++++...++| .+..+||..|+++|++.++++|+.++.+ ..||+++|..|||
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~dlr~~v~~ 677 (831)
T TIGR02412 605 PIADRPALLAVAALACRSLRRA-----MESGPDFQLR-WLRALALTATDPDSLRRLLSLLDGKIKG-LALDPDLRWRIIA 677 (831)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-----cCCCccHHHH-HHHHHHHhcCCHHHHHHHHHHHhCCCCC-cccCHhHHHHHHH
Confidence 6678899999998888764422 3333333333 3555899999999999999999998764 5899999999999
Q ss_pred eeeecCChhhhHHHHHHhccCCCCCCCceeeeccccccccccccCCCCHHhHhh-hhc----eeeeecceeEEeeeceee
Q psy14860 550 AGIKYGGVKEWQNCWAKYNSTRVPSEPYLATTHFEPTYARSAFPCFDEPQFKAR-FKM----SIFRDRFHISLFNMPITS 624 (711)
Q Consensus 550 ~gi~~g~~~~w~~l~~~y~~s~~~~ek~~l~Tq~ep~~A~~~lpC~d~P~lka~-~l~----sii~~~~~~~vsn~~~~~ 624 (711)
.+++ ++..+|+.++..|+.+.+..++..+ +.+++|+.+|++|++ +.. +.+.+++...++.+ +.
T Consensus 678 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~---------l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 745 (831)
T TIGR02412 678 RLAA-LGFIDADDIAAELERDNTASGEEHA---------AAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEG--FW 745 (831)
T ss_pred HHHh-cCCCCHHHHHHHHhcCCCHHHHHHH---------HHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhh--cC
Confidence 7666 5678888999999988877778777 999999999999884 333 22344555555555 44
Q ss_pred ecccCccccccceEEEeeccccc
Q psy14860 625 TDDVGFYMGTGLLRDDFQESVEM 647 (711)
Q Consensus 625 ~~~~g~~~~w~~~~~~f~~~~~~ 647 (711)
++.+...+|.|+..+|+.+..+
T Consensus 746 -~~~~~~~~~~~~~~~~~~l~~~ 767 (831)
T TIGR02412 746 -QPEQALLLAAYAERYFANLADI 767 (831)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHH
Confidence 3477888999999999966553
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-50 Score=472.98 Aligned_cols=497 Identities=26% Similarity=0.324 Sum_probs=363.7
Q ss_pred hhccccccceeeeecccccCCCCCcccchh----hhHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHhhCC-C
Q psy14860 17 NLRKKTNYTLILRYYTRLNQDMEGFYLSSY----TTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMP-G 91 (711)
Q Consensus 17 ~~~~~en~gl~~~~~~~~~~~~~~~~~~~~----~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~~~~-~ 91 (711)
++|||||||+++.....+..+..+-....| .|++||+|||||||+|||+||+++|||||||+|+++...+.+.| .
T Consensus 275 ~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~ 354 (859)
T COG0308 275 SAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRA 354 (859)
T ss_pred CCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchH
Confidence 689999999999888766665333332222 49999999999999999999999999999999999999999999 8
Q ss_pred ccHHHHHHHHHHHHHhhccccCCCCCceeccCChhhHhhccccccccchHHHHHHHHHhhChHHHHHHHHHHHhhhccCC
Q psy14860 92 WNMMDQFILDKTQQALGLDALSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171 (711)
Q Consensus 92 ~~~~~~f~~~~~~~al~~D~~~~s~pi~~~v~~~~~i~~~f~~i~Y~KGa~vl~ML~~~lG~~~F~~~l~~yl~~~~~~~ 171 (711)
|..++.|.......++..|+...+|||...+.+|.+|+.+||.++|.||++|+|||+.++|++.|++||+.|+++|++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~ 434 (859)
T COG0308 355 WKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN 434 (859)
T ss_pred HHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC
Confidence 99999987777776999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCccHHHHHhhhhcccCcceEEEEecCCCCCCCCCCCCCCCCCeeeEEEEeeeecCCCCCCCCCC
Q psy14860 172 AETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDS 251 (711)
Q Consensus 172 a~~~df~~~l~~~~~~~~~l~~~~~~W~~q~G~P~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~Q~rf~~~~~~~~~~~~ 251 (711)
++++|||+++++++++ |++.+|..|++|+|+|+|+|+..++ + .++++|++|...+.
T Consensus 435 ~~~~Dl~~a~~~~sg~--dl~~~~~~w~~q~G~P~l~v~~~~~-------------~--~~~l~~~q~~~~~~------- 490 (859)
T COG0308 435 ATTMDLWKALEDASGK--DLSAFFESWLSQAGYPVLTVSVRYD-------------D--FFKLTQKQFTPPGQ------- 490 (859)
T ss_pred CCHHHHHHHHHHHhCC--cHHHHHHHHHhCCCCCceeeeeecc-------------c--cEEEEEEEeccCCC-------
Confidence 9999999999999998 9999999999999999999998776 1 46789999987641
Q ss_pred CCCCCCCCCCceEEEEEEEEEcCCCceeeEEEEecCce--eEEecCCCCc--eEEEccCCeeeeeeecChhhHHHHHHHH
Q psy14860 252 KLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTD--VTFKLPNSIK--WIKANVNQSGFYRVTYDDHLWDALIQAL 327 (711)
Q Consensus 252 ~~~~~~~~~~~~W~IPl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~i~~N~~~~gyyrv~yd~~~~~~l~~~l 327 (711)
+....|+||+.+.....+.. ....+.... .+++...++. -+++|....|+
T Consensus 491 -------~~~~~~~iPl~~~~~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~----------------- 544 (859)
T COG0308 491 -------EEKRPWPIPLAIKLLDGGGV--KVLLLTEGEQTVTFELVGIPPFPSLKVNDSAPVF----------------- 544 (859)
T ss_pred -------ccCceeeeccEEEecCCCCc--eeeeeeccceEEEEecccCCccceeeccCCccce-----------------
Confidence 13568999999988754421 222223332 3333322222 34444444444
Q ss_pred hcccccCChhhhhhhHHHHHHhhhhcccCccccccccccccccccCCccceeeeccccccceEeecCHhHHHHHHHHHhh
Q psy14860 328 KTNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKT 407 (711)
Q Consensus 328 ~~~~~~~~~~~r~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yRv~Yd~~~w~~l~~~l~~ 407 (711)
|++.|+++.|..++....
T Consensus 545 -------------------------------------------------------------~~~~y~~~~l~~~~~~~~- 562 (859)
T COG0308 545 -------------------------------------------------------------YRVDYSDQSLSKLLQHDP- 562 (859)
T ss_pred -------------------------------------------------------------EEEecCHHHHHHHHhhhh-
Confidence 888888888877755432
Q ss_pred CCCCCChhhHhhHHHHHHHHHHcCCcchhhHHHHHHhhhhCCCcccHHH--HHHhHHHHHHhccCCCchhHHHHHHHHHH
Q psy14860 408 NHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWAT--ALEHFQHWSTSLSEASPYRLFEQYVKKLL 485 (711)
Q Consensus 408 ~~~~~~~~~r~~li~D~~~l~~~g~l~~~~~l~l~~~l~~e~~~~~w~~--~~~~l~~i~~~l~~~~~~~~~~~y~~~l~ 485 (711)
.+++.+|+.++.|..++..+|..+....+..+.-..++.....+.. ....+..+...... + ..+.......+
T Consensus 563 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~~~~~~~~ 636 (859)
T COG0308 563 ---RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFADL-E--KFIDPDAIDQL 636 (859)
T ss_pred ---hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchhh-h--hhcCHHHHHHH
Confidence 6889999999999999999999999998888877766655555544 33333333221110 1 45566677778
Q ss_pred HHHhccccccccCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhcCCCCCCCccceeeeeeeecCC-hhhhHHHH
Q psy14860 486 TPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIKYGG-VKEWQNCW 564 (711)
Q Consensus 486 ~~~~~~lg~~~~~s~~~~~lR~~il~~aC~~g~~~ci~~A~~~F~~~~~~~~~ip~~lr~~Vy~~gi~~g~-~~~w~~l~ 564 (711)
...+.++++....+......+...++.+|......++.....+|..+-.....+++++|..+-..-...++ .+.+..+.
T Consensus 637 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 716 (859)
T COG0308 637 RDALVRLGAEAVADDLLALYHIGALSQSLYEEDASLAALRALRNACLERLEKQEDPELRSLVVKAYAAAGNMTDALKALL 716 (859)
T ss_pred HHHHHHHHHHhhcchHHHHHHhhhhccccccccHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHhcChHHHHHHHH
Confidence 88888888876444333333333336777788888999999998887555556778877655433333333 23577788
Q ss_pred HHhccCCCCCCCceeeeccccccccccccCCCCHHhHhhhhceeee-----ecceeEEeeeceeeecccCccccccceEE
Q psy14860 565 AKYNSTRVPSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFR-----DRFHISLFNMPITSTDDVGFYMGTGLLRD 639 (711)
Q Consensus 565 ~~y~~s~~~~ek~~l~Tq~ep~~A~~~lpC~d~P~lka~~l~sii~-----~~~~~~vsn~~~~~~~~~g~~~~w~~~~~ 639 (711)
+.|........+..+ ...+.-+..+..+...+..+.. +++....... ....+.+....|.|...
T Consensus 717 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 785 (859)
T COG0308 717 EAYQSPTRAEALRDF---------ADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHA--AFEAPNPNEARWLYGTF 785 (859)
T ss_pred HhcccCChHHHHHHH---------HHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhh--hhhCCcchhhHHHHHHH
Confidence 888766554444444 4555555566666554442221 2222222222 33455666777777777
Q ss_pred Eee
Q psy14860 640 DFQ 642 (711)
Q Consensus 640 ~f~ 642 (711)
+|+
T Consensus 786 ~~~ 788 (859)
T COG0308 786 AFE 788 (859)
T ss_pred hhh
Confidence 776
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=5.4e-43 Score=410.27 Aligned_cols=310 Identities=19% Similarity=0.240 Sum_probs=228.7
Q ss_pred ccccchhHHHHHHHh-hhccccccceeeeecccccCCCCCccc----chhhhHHHHHHhhhcCCccccCCCChhhhhHhH
Q psy14860 2 LEYSAGQQVYIEFKE-NLRKKTNYTLILRYYTRLNQDMEGFYL----SSYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGF 76 (711)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~en~gl~~~~~~~~~~~~~~~~~----~~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGf 76 (711)
+|||.++.-..+.|. ++|||||+||++.....+..+...... ....++|||+|||||||+||++||+++||||||
T Consensus 235 ~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGf 314 (863)
T TIGR02414 235 LEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGL 314 (863)
T ss_pred CCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhH
Confidence 368877776666665 689999999998766666554322111 123699999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCc--cHHHHHHHHHHHHHhhccccCCCCCceeccCChhhHhhccccccccchHHHHHHHHHhhChH
Q psy14860 77 ASFLEYYGVDHVMPGW--NMMDQFILDKTQQALGLDALSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQG 154 (711)
Q Consensus 77 A~y~~~~~~~~~~~~~--~~~~~f~~~~~~~al~~D~~~~s~pi~~~v~~~~~i~~~f~~i~Y~KGa~vl~ML~~~lG~~ 154 (711)
|+|++..+.....+.. ++.+.... ...++..|+.+.+||+.. .+..++...|+.++|.||++|||||+..||++
T Consensus 315 Aty~e~~~~~~~~~~~~~~~~~~~~l--r~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee 390 (863)
T TIGR02414 315 TVFRDQEFSADMTSRAVKRIEDVRLL--RAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIRMLHTLLGEE 390 (863)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHHHHHHHHhCHH
Confidence 9999987666554321 12221111 123567788888999863 45678889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHhhcCCCccHHHHHhhhhcccCcceEEEEecCCCCCCCCCCCCCCCCCeeeEE
Q psy14860 155 TLRAGLNDYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSA 234 (711)
Q Consensus 155 ~F~~~l~~yl~~~~~~~a~~~df~~~l~~~~~~~~~l~~~~~~W~~q~G~P~v~v~~~~~~~~~~~~~~~~~~~~~~~~l 234 (711)
.|++||+.|+++|++++++++|||++++++++. |+.+|+ +|++|+|+|+|+|+++++. ..+..++++
T Consensus 391 ~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~--dL~~f~-~W~~q~G~P~v~v~~~yd~----------~~~~~~lt~ 457 (863)
T TIGR02414 391 GFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGR--DLNQFR-RWYSQAGTPVLEVKENYDA----------AKKTYTLTV 457 (863)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCC--CHHHHH-HHHcCCCCceeEEEEEEcC----------CCCEEEEEE
Confidence 999999999999999999999999999999997 999985 8999999999999988651 112125666
Q ss_pred EEeeeecCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEcC-CCce-e---------eEEEEecCceeEEecCC--CCceE
Q psy14860 235 TQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQ-TGYK-E---------QEIVWMNMTDVTFKLPN--SIKWI 301 (711)
Q Consensus 235 ~Q~rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~~~~-~~~~-~---------~~~~~~~~~~~~~~~~~--~~~~i 301 (711)
+|+.. .+.. .+....|+|||.+.... +|.. . ..++.+...+.++.+++ ..-.+
T Consensus 458 ~Q~~~--~~~~------------~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~~~p~~ 523 (863)
T TIGR02414 458 RQSTP--PTPG------------QTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIAEKPVP 523 (863)
T ss_pred EEeCC--CCCC------------CCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCCCCCee
Confidence 77632 1111 11345799999997542 2221 0 23566777666766542 22358
Q ss_pred EEccCCeeeeeeecChhhHHHHHHHHhcccccCChhhhhhhH
Q psy14860 302 KANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLI 343 (711)
Q Consensus 302 ~~N~~~~gyyrv~yd~~~~~~l~~~l~~~~~~~~~~~r~~l~ 343 (711)
.++.+...+.++.|+. +=+.|.-.+..+++.+..-+.++-+
T Consensus 524 sl~r~fsapv~l~~~~-~~~~l~~l~~~d~d~~~r~~a~q~l 564 (863)
T TIGR02414 524 SLLRGFSAPVNLEYPY-SDEDLLLLLAHDSDPFNRWEAGQRL 564 (863)
T ss_pred eecCCCCceEEEeCCC-CHHHHHHHHhhCCChhHHHHHHHHH
Confidence 8899999999998864 5566666677777766666655555
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=2.5e-42 Score=405.95 Aligned_cols=308 Identities=19% Similarity=0.253 Sum_probs=226.9
Q ss_pred cccchhHHHHHHHh-hhccccccceeeeecccccCCCCCccc----chhhhHHHHHHhhhcCCccccCCCChhhhhHhHH
Q psy14860 3 EYSAGQQVYIEFKE-NLRKKTNYTLILRYYTRLNQDMEGFYL----SSYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFA 77 (711)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~en~gl~~~~~~~~~~~~~~~~~----~~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA 77 (711)
+||.++.-..+.+. ++|||||+|+++.....+..+...... ....+||||+|||||||+||++||+++|||||||
T Consensus 249 pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFA 328 (875)
T PRK14015 249 EYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLT 328 (875)
T ss_pred CCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHH
Confidence 67766665555554 578999999998766655544221111 1236999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC-c-cHHHHHHHHHHHHHhhccccCCCCCceeccCChhhHhhccccccccchHHHHHHHHHhhChHH
Q psy14860 78 SFLEYYGVDHVMPG-W-NMMDQFILDKTQQALGLDALSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGT 155 (711)
Q Consensus 78 ~y~~~~~~~~~~~~-~-~~~~~f~~~~~~~al~~D~~~~s~pi~~~v~~~~~i~~~f~~i~Y~KGa~vl~ML~~~lG~~~ 155 (711)
+|++..+.....+. + ++.+.... ...++..|+.+.+||+.. .+..++..+|+.++|.||++|||||+..||++.
T Consensus 329 ty~e~~~~~~~~~~~~~~~~~~~~l--~~~~~~~D~~~~a~pi~p--~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~ 404 (875)
T PRK14015 329 VFRDQEFSADLGSRAVKRIEDVRVL--RAAQFAEDAGPMAHPVRP--DSYIEINNFYTATVYEKGAEVIRMLHTLLGEEG 404 (875)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH--hhhcccccccccCCCCCC--cchhhHHhcccchhhhHHHHHHHHHHHHhCHHH
Confidence 99987776654431 1 11121111 123466787777888853 345678889999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCHHHHHHHHHhhcCCCccHHHHHhhhhcccCcceEEEEecCCCCCCCCCCCCCCCCCeeeEEE
Q psy14860 156 LRAGLNDYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSAT 235 (711)
Q Consensus 156 F~~~l~~yl~~~~~~~a~~~df~~~l~~~~~~~~~l~~~~~~W~~q~G~P~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (711)
|++||+.|+++|++++++++|||++++++++. |+.+|+ +|++|+|+|+|+|+++++ +..+..+++++
T Consensus 405 F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~--DL~~f~-~W~~q~G~P~l~v~~~~d----------~~~~~~~ltl~ 471 (875)
T PRK14015 405 FRKGMDLYFERHDGQAVTCEDFVAAMEDASGR--DLSQFR-RWYSQAGTPRVTVSDEYD----------AAAGTYTLTLS 471 (875)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCC--CHHHHH-HHHcCCCCCeEEEEEEEc----------CCCCEEEEEEE
Confidence 99999999999999999999999999999997 999986 899999999999998865 11122356677
Q ss_pred EeeeecCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEcCC-Cce-e--------eEEEEecCceeEEecC---CCCceEE
Q psy14860 236 QTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQT-GYK-E--------QEIVWMNMTDVTFKLP---NSIKWIK 302 (711)
Q Consensus 236 Q~rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~~~~~-~~~-~--------~~~~~~~~~~~~~~~~---~~~~~i~ 302 (711)
|... .... ......|+|||.+...+. +.. . ..++.++..+.++.++ ..+ .+.
T Consensus 472 Q~~~--~~~~------------~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~~~p-~~s 536 (875)
T PRK14015 472 QSTP--PTPG------------QPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVAERP-VPS 536 (875)
T ss_pred EeCC--CCCC------------CCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCCCCc-eEE
Confidence 7632 1111 123568999999975332 221 0 3356777777777765 344 478
Q ss_pred EccCCeeeeeeecChhhHHHHHHHHhcccccCChhhhhhhH
Q psy14860 303 ANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLI 343 (711)
Q Consensus 303 ~N~~~~gyyrv~yd~~~~~~l~~~l~~~~~~~~~~~r~~l~ 343 (711)
++.+...+.++.++. +=+.|.-++..+++.+..-+.++-+
T Consensus 537 ~~r~fsapv~~~~~~-~~~~l~~l~~~d~d~~~r~~a~q~l 576 (875)
T PRK14015 537 LLRGFSAPVKLEYDY-SDEDLLFLMAHDSDPFNRWEAGQRL 576 (875)
T ss_pred ecCCCCCcEEEeCCC-CHHHHHHHHhhCCChhHHHHHHHHH
Confidence 999999999998764 5566676777777766666666655
No 6
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=1.1e-39 Score=350.28 Aligned_cols=256 Identities=34% Similarity=0.659 Sum_probs=222.1
Q ss_pred eeeeccccccceEeecCHhHHHHHHHHHhhCCCCCChhhHhhHHHHHHHHHHcCCcchhhHHHHHHhh-hhCCCcccHHH
Q psy14860 378 WIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYL-LKEKDYVPWAT 456 (711)
Q Consensus 378 ~~~~~~~~~~~yRv~Yd~~~w~~l~~~l~~~~~~~~~~~r~~li~D~~~l~~~g~l~~~~~l~l~~~l-~~e~~~~~w~~ 456 (711)
||+.|.+++|||||+||+++|..|+++|..++ ||+.+|++|++|+|+|+++|+++++.+|+++.|+ ++|++|.||.+
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~--l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~ 78 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNH--LSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWST 78 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHG--S-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHH
Confidence 99999999999999999999999999998876 9999999999999999999999999999999999 99999999999
Q ss_pred HHHhHHHHHHhcc-CCCchhH-HHHHHHHHHHHHhcccccccc--CCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q psy14860 457 ALEHFQHWSTSLS-EASPYRL-FEQYVKKLLTPISHHIGWEDT--GSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGW 532 (711)
Q Consensus 457 ~~~~l~~i~~~l~-~~~~~~~-~~~y~~~l~~~~~~~lg~~~~--~s~~~~~lR~~il~~aC~~g~~~ci~~A~~~F~~~ 532 (711)
+++.|..+.+++. ..+.... |++|+++++.|+++++||+.. +++....+|..|+.+|| |+++|++.|.++|++|
T Consensus 79 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~ 156 (324)
T PF11838_consen 79 ALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAW 156 (324)
T ss_dssp HHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHH
Confidence 9999999998887 3344444 999999999999999999884 89999999999999999 9999999999999999
Q ss_pred hhc-CC---CCCCCccceeeeeeeecCChhhhHHHHHHhccCCCCCCCceeeeccccccccccccCCCCHHhHhhhhc--
Q psy14860 533 MEK-GF---RIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSEPYLATTHFEPTYARSAFPCFDEPQFKARFKM-- 606 (711)
Q Consensus 533 ~~~-~~---~ip~~lr~~Vy~~gi~~g~~~~w~~l~~~y~~s~~~~ek~~l~Tq~ep~~A~~~lpC~d~P~lka~~l~-- 606 (711)
+.+ .+ .|||++|..|||.++++|+.++|+.++++|+++.+..+|..+ +.+++|+.+|+++.+++.
T Consensus 157 ~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~---------l~aLa~~~d~~~~~~~l~~~ 227 (324)
T PF11838_consen 157 LDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRL---------LSALACSPDPELLKRLLDLL 227 (324)
T ss_dssp HHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHH---------HHHHTT-S-HHHHHHHHHHH
T ss_pred hcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHH---------HHhhhccCCHHHHHHHHHHH
Confidence 987 33 899999999999999999999999999999998888888888 999999999999998777
Q ss_pred ---eeeeecceeEEeeeceee-ecccCccccccceEEEeecccccc
Q psy14860 607 ---SIFRDRFHISLFNMPITS-TDDVGFYMGTGLLRDDFQESVEMS 648 (711)
Q Consensus 607 ---sii~~~~~~~vsn~~~~~-~~~~g~~~~w~~~~~~f~~~~~~~ 648 (711)
+.+.+++...++.+ +. .++.|+..+|+|+..||+.+..+.
T Consensus 228 l~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~i~~~~ 271 (324)
T PF11838_consen 228 LSNDKVRSQDIRYVLAG--LASSNPVGRDLAWEFFKENWDAIIKKF 271 (324)
T ss_dssp HCTSTS-TTTHHHHHHH--HH-CSTTCHHHHHHHHHHCHHHHHCHC
T ss_pred cCCcccccHHHHHHHHH--HhcCChhhHHHHHHHHHHHHHHHHHHh
Confidence 23667777777766 65 788999999999999999988774
No 7
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=3.4e-36 Score=344.08 Aligned_cols=204 Identities=23% Similarity=0.343 Sum_probs=153.8
Q ss_pred ccccchhHHHHHH--HhhhccccccceeeeecccccCCCCCcccchhhhHHHHHHhhhcCCccccCCCChhhhhHhHHHH
Q psy14860 2 LEYSAGQQVYIEF--KENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASF 79 (711)
Q Consensus 2 ~~~~~~~~~~~~~--~~~~~~~en~gl~~~~~~~~~~~~~~~~~~~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y 79 (711)
.+||-++--.... .-+.|||||+|+++..+..+..+. +...++|||||||||||+||++||+|+|||||||+|
T Consensus 239 ~pYp~~k~d~vvlpp~f~~GgMEN~~ltf~~~~ll~~d~-----s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty 313 (601)
T TIGR02411 239 FPYEWGQYDLLVLPPSFPYGGMENPNLTFATPTLIAGDR-----SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVY 313 (601)
T ss_pred CCCcCccceEEEecCcccccccccccceeeccccccCCh-----hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHH
Confidence 3566544332222 124689999998776666654432 234699999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCccH-HHHH-HHHHHHHHhhccccCCCCCceeccCChh--hHhhccccccccchHHHHHHHHHhhC-hH
Q psy14860 80 LEYYGVDHVMPGWNM-MDQF-ILDKTQQALGLDALSTSHPISVTVHDPV--EIEAIFDTISYSKGAAILYMLEKFLG-QG 154 (711)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~f-~~~~~~~al~~D~~~~s~pi~~~v~~~~--~i~~~f~~i~Y~KGa~vl~ML~~~lG-~~ 154 (711)
++++++++++|++.. ...+ ....++.++. .+...+|+...+.+.. ++...|+.++|.||+++|+||++.|| ++
T Consensus 314 ~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~ 391 (601)
T TIGR02411 314 LERRIVGRLYGEKTRHFSALIGWGELQESVK--TLGEDPEYTKLVVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPA 391 (601)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhHHHHHHHHH--hhcCCCCCCcccccCCCCChhhhccccchhhHHHHHHHHHHHhCCHH
Confidence 999999999998642 1111 1222333332 2333445544333322 56789999999999999999999999 99
Q ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHhhcCC---CccHHHH-HhhhhcccCcceEEEEec
Q psy14860 155 TLRAGLNDYLNTHKYGNAETKDFWSVLSKHSNH---SINVKAI-MDTWSRQMGFPVIRISRI 212 (711)
Q Consensus 155 ~F~~~l~~yl~~~~~~~a~~~df~~~l~~~~~~---~~~l~~~-~~~W~~q~G~P~v~v~~~ 212 (711)
.|+++||.|+++|+|++++++|||++|.+.... ..+++.+ |+.|++++|+|.++++.+
T Consensus 392 ~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 392 VFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 999999999999999999999999999886522 1256666 899999999999887644
No 8
>KOG1047|consensus
Probab=99.92 E-value=1.5e-25 Score=239.06 Aligned_cols=187 Identities=25% Similarity=0.363 Sum_probs=146.5
Q ss_pred hhccccccceeeeecccccCCCCCcccchhhhHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHhhCCCccHHH
Q psy14860 17 NLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMD 96 (711)
Q Consensus 17 ~~~~~en~gl~~~~~~~~~~~~~~~~~~~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~~~~~~~~~~ 96 (711)
+.|||||.-+.+.-++++..|.. ...+|||||||.||||+||...|++.||||||++|+|..+...++++.. .
T Consensus 265 P~gGMENPcltF~TpTllaGDrs-----l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g~~~g~~~--~ 337 (613)
T KOG1047|consen 265 PFGGMENPCLTFVTPTLLAGDRS-----LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVGRLYGEAY--R 337 (613)
T ss_pred CcccccCcceeeecchhhcCCcc-----hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhhhhcchhH--H
Confidence 46899999999999999988744 3469999999999999999999999999999999999999999988632 1
Q ss_pred HHHHHHHHHHh--hccccCCCCCceeccCC--hhhHhhccccccccchHHHHHHHHHhhC-hHHHHHHHHHHHhhhccCC
Q psy14860 97 QFILDKTQQAL--GLDALSTSHPISVTVHD--PVEIEAIFDTISYSKGAAILYMLEKFLG-QGTLRAGLNDYLNTHKYGN 171 (711)
Q Consensus 97 ~f~~~~~~~al--~~D~~~~s~pi~~~v~~--~~~i~~~f~~i~Y~KGa~vl~ML~~~lG-~~~F~~~l~~yl~~~~~~~ 171 (711)
+|-.-...+.+ ..|.+..+++.+.-+.+ .-+.+..|..+.|.||.++++-|++.+| ++.|...||.|+++|+|+.
T Consensus 338 ~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~ks 417 (613)
T KOG1047|consen 338 QFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRAYVHKFAFKS 417 (613)
T ss_pred HHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHHHHHHhccce
Confidence 22111111111 23555556665532211 1234578999999999999999999999 7889999999999999999
Q ss_pred CCHHHHHHHHHhhcCC--CccH--HHHHhhhhcccCcceEEEE
Q psy14860 172 AETKDFWSVLSKHSNH--SINV--KAIMDTWSRQMGFPVIRIS 210 (711)
Q Consensus 172 a~~~df~~~l~~~~~~--~~~l--~~~~~~W~~q~G~P~v~v~ 210 (711)
++++||.+.|-+...+ ..++ .-.++.|++.+|.|.+.-.
T Consensus 418 I~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 418 ILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred ecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 9999999999988774 1122 2348999999999986554
No 9
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=99.88 E-value=3.3e-24 Score=236.42 Aligned_cols=138 Identities=38% Similarity=0.664 Sum_probs=113.6
Q ss_pred cccchhHHHHHHHh-hhccccccceeeeecccccCCCCC----cccchhhhHHHHHHhhhcCCccccCCCChhhhhHhHH
Q psy14860 3 EYSAGQQVYIEFKE-NLRKKTNYTLILRYYTRLNQDMEG----FYLSSYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFA 77 (711)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~en~gl~~~~~~~~~~~~~~----~~~~~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA 77 (711)
+||..+--..+.|. ..++|||+|+++.....+..+... .......++|||+|||||||+||++||+|+||+||||
T Consensus 248 ~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a 327 (390)
T PF01433_consen 248 PYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFA 327 (390)
T ss_dssp --SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHH
T ss_pred cceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHH
Confidence 45555544445553 458999999998777766654221 1223346899999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCccHHHHHHHHHHHHHhhccccCCCCCceeccCChhhHhhccccccccch
Q psy14860 78 SFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTSHPISVTVHDPVEIEAIFDTISYSKG 140 (711)
Q Consensus 78 ~y~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~s~pi~~~v~~~~~i~~~f~~i~Y~KG 140 (711)
+|++++++++++|++.+++.|....++.++..|+...++|+..++.++.++..+|+.++|.||
T Consensus 328 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 328 TYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred HHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 999999999999999999999999999999999999999999888999999999999999998
No 10
>KOG1046|consensus
Probab=99.87 E-value=1.8e-22 Score=240.21 Aligned_cols=135 Identities=47% Similarity=0.838 Sum_probs=127.0
Q ss_pred CCCCceeeeccccccccccccCCCCHHhHhhhhceeeeecceeEEeeeceeeecccCccccccceEEEeeccccccccee
Q psy14860 573 PSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLV 652 (711)
Q Consensus 573 ~~ek~~l~Tq~ep~~A~~~lpC~d~P~lka~~l~sii~~~~~~~vsn~~~~~~~~~g~~~~w~~~~~~f~~~~~~~tYl~ 652 (711)
..+++.++|||||++||++|||+|+|++||+|.+++++|.++.+++|||+....+.+. +|....|+++++|||||+
T Consensus 149 ~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~~~~----~~~~~~F~~Tp~MstYLv 224 (882)
T KOG1046|consen 149 GSEKSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEPVDD----GWKTTTFEKTPKMSTYLV 224 (882)
T ss_pred CceEEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCcccccccccC----CeeEEEEEecCCCchhhh
Confidence 3448899999999999999999999999999999999999999999998887777665 377889999999999999
Q ss_pred EEEEecceeEeeeecCCeEEEEEECCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q psy14860 653 AFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQ 711 (711)
Q Consensus 653 a~~vg~f~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~pYP~~K~ 711 (711)
||+||+|...+..+..++++|+|++|+..+++.++++.+++.|++||++||+|||++|+
T Consensus 225 Af~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~ 283 (882)
T KOG1046|consen 225 AFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKL 283 (882)
T ss_pred eeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 99999999999888888999999999999999999999999999999999999999996
No 11
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=99.83 E-value=7.9e-21 Score=226.37 Aligned_cols=131 Identities=29% Similarity=0.439 Sum_probs=114.7
Q ss_pred CCceeeeccccccccccccCCCCHHhHhhhhceeeeecceeEEeeeceeeecccCccccccceEEEeecccccccceeEE
Q psy14860 575 EPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAF 654 (711)
Q Consensus 575 ek~~l~Tq~ep~~A~~~lpC~d~P~lka~~l~sii~~~~~~~vsn~~~~~~~~~g~~~~w~~~~~~f~~~~~~~tYl~a~ 654 (711)
.+..++|||||++||++|||+|+|++|++|.+++++|+++.+++||++.+....+. ..+.+|+.++|||+||++|
T Consensus 116 g~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~~~~~-----~~~~~F~~t~pmstYL~a~ 190 (831)
T TIGR02412 116 GEVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVTPEPA-----DRRWEFPETPKLSTYLTAV 190 (831)
T ss_pred CeEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCccccccccCC-----CeEEEecCCCCcccceEEE
Confidence 34667999999999999999999999999999999999999999997655443332 2344799999999999999
Q ss_pred EEecceeEeeeecCCeEEEEEECCCChhh--HHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q psy14860 655 VVCDYQAITDVTAKGVSVSVYAPPDLLPQ--AKFALNTSTHMMDFYEEFFGVPYPLPKQ 711 (711)
Q Consensus 655 ~vg~f~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~~l~~~e~~fg~pYP~~K~ 711 (711)
+||+|..++.. ..++|+++|++|+..+. ++++++.++++|++||++||+||||+|+
T Consensus 191 ~vG~f~~~~~~-~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~ 248 (831)
T TIGR02412 191 AAGPYHSVQDE-SRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKY 248 (831)
T ss_pred EEeceEEEeec-CCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccC
Confidence 99999998754 47899999999987664 5789999999999999999999999996
No 12
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=99.82 E-value=1.9e-20 Score=206.40 Aligned_cols=136 Identities=38% Similarity=0.674 Sum_probs=116.8
Q ss_pred CCCCCceeeeccccccccccccCCCCHHhHhhhhceeeeecceeEEeeeceeeecccCccccccceEEEeecccccccce
Q psy14860 572 VPSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYL 651 (711)
Q Consensus 572 ~~~ek~~l~Tq~ep~~A~~~lpC~d~P~lka~~l~sii~~~~~~~vsn~~~~~~~~~g~~~~w~~~~~~f~~~~~~~tYl 651 (711)
....+..++|||||.+||++|||+|+|+.|++|.+++.+|+++.+++|+++......++ ++.+.+|..++||++|+
T Consensus 119 ~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~~~----~~~~~~f~~t~p~~~yl 194 (390)
T PF01433_consen 119 NGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESNDD----GWKTTTFETTPPMPTYL 194 (390)
T ss_dssp SSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEETT----TEEEEEEEEEEEEEGGG
T ss_pred ccccCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccccc----cceeEeeecccccCchh
Confidence 44567788999999999999999999999999999999999999999998777665553 46778999999999999
Q ss_pred eEEEEecceeEeeeecCCeEEEEEECCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q psy14860 652 VAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQ 711 (711)
Q Consensus 652 ~a~~vg~f~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~pYP~~K~ 711 (711)
+||+||+|..++.....++++++|++|+..+.+.++++.++++|.+|+++||+|||++|+
T Consensus 195 ~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~ 254 (390)
T PF01433_consen 195 FAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKL 254 (390)
T ss_dssp --EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEE
T ss_pred hhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecce
Confidence 999999999997666556999999999999999999999999999999999999999985
No 13
>PRK14015 pepN aminopeptidase N; Provisional
Probab=99.78 E-value=5.5e-19 Score=208.91 Aligned_cols=130 Identities=23% Similarity=0.357 Sum_probs=113.2
Q ss_pred eeeeccccccccccccCCCCHHhHhhhhceeeeec-ce-eEEeeeceeeecccCccccccceEEEeecccccccceeEEE
Q psy14860 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDR-FH-ISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFV 655 (711)
Q Consensus 578 ~l~Tq~ep~~A~~~lpC~d~P~lka~~l~sii~~~-~~-~~vsn~~~~~~~~~g~~~~w~~~~~~f~~~~~~~tYl~a~~ 655 (711)
.++|||||++||++|||+|+|+.|++|.++|++|+ .+ .+++||+++.....+. ++.+.+|+.++||++||+||+
T Consensus 120 ~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~~~~----g~~~~~w~~~~PmpsYL~Al~ 195 (875)
T PRK14015 120 MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGELPD----GRHWATWEDPFPKPSYLFALV 195 (875)
T ss_pred EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCccccceeccC----CeEEEEEEeCCCcccceEEEE
Confidence 56999999999999999999999999999999998 46 5789997665543222 345568999999999999999
Q ss_pred EecceeEeee----ecCCeEEEEEECCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q psy14860 656 VCDYQAITDV----TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQ 711 (711)
Q Consensus 656 vg~f~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~pYP~~K~ 711 (711)
||+|.++++. .++++|+++|++|+..+++.++++.++++|++||++||+||||+|+
T Consensus 196 aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~ 255 (875)
T PRK14015 196 AGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIF 255 (875)
T ss_pred EeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhh
Confidence 9999998753 2245999999999999999999999999999999999999999985
No 14
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=99.76 E-value=1e-18 Score=205.98 Aligned_cols=130 Identities=22% Similarity=0.300 Sum_probs=113.0
Q ss_pred eeeeccccccccccccCCCCHHhHhhhhceeeeecc-e-eEEeeeceeeecccCccccccceEEEeecccccccceeEEE
Q psy14860 578 LATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRF-H-ISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFV 655 (711)
Q Consensus 578 ~l~Tq~ep~~A~~~lpC~d~P~lka~~l~sii~~~~-~-~~vsn~~~~~~~~~g~~~~w~~~~~~f~~~~~~~tYl~a~~ 655 (711)
.++|||||++||+++||+|+|++|++|.++|++|++ + ..++|++++.....+. ++...+|+.++|||+||+||+
T Consensus 107 ~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~~~~----g~~~~~f~~t~pmptYLfA~v 182 (863)
T TIGR02414 107 NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGELPD----GRHWAEWEDPFPKPSYLFALV 182 (863)
T ss_pred eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCccccceecCC----CeEEEEEeCCCCcChhHheEE
Confidence 569999999999999999999999999999999986 5 5689996654433222 345668999999999999999
Q ss_pred EecceeEeee----ecCCeEEEEEECCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q psy14860 656 VCDYQAITDV----TAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLPKQ 711 (711)
Q Consensus 656 vg~f~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~pYP~~K~ 711 (711)
||+|.++++. .+.++++++|++|+..+++.++++.++++|++||++||+|||++|+
T Consensus 183 aGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~ 242 (863)
T TIGR02414 183 AGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIF 242 (863)
T ss_pred EeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhc
Confidence 9999998753 2346899999999999999999999999999999999999999985
No 15
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=99.73 E-value=5.5e-18 Score=202.09 Aligned_cols=158 Identities=30% Similarity=0.482 Sum_probs=130.7
Q ss_pred eeeeeeecCChhhhHHHHHHhccCCCCCCCceeeeccccccccccccCCCCHHhHhhhhceeeeecceeEEeeeceeeec
Q psy14860 547 VYYAGIKYGGVKEWQNCWAKYNSTRVPSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTD 626 (711)
Q Consensus 547 Vy~~gi~~g~~~~w~~l~~~y~~s~~~~ek~~l~Tq~ep~~A~~~lpC~d~P~lka~~l~sii~~~~~~~vsn~~~~~~~ 626 (711)
.+...+...+...-..+.+.|+..... +..++||||+.+||++|||+|+|++|++|..+|..++.+.+++|++.+...
T Consensus 106 ~l~i~~~~~~~~s~~~~~Gly~~~~~~--~~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~ 183 (859)
T COG0308 106 TLAITYEFTGPVSNDTLEGLYRSGYGG--KPYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGG 183 (859)
T ss_pred cEEEEEEecccccCccccceeecCCCC--CeeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCccccc
Confidence 344444443333334556677765432 667799999999999999999999999999999999999999999776655
Q ss_pred ccCccccccceEEEeecccccccceeEEEEecceeEeeeec---CCeEEEEEECCCChhhHHHHHHHHHHHHHHHHHhhC
Q psy14860 627 DVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTA---KGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFG 703 (711)
Q Consensus 627 ~~g~~~~w~~~~~~f~~~~~~~tYl~a~~vg~f~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg 703 (711)
..++ ++...+|+.++||||||+|+++|+|.++++... .++|+++|++++....+.++++.++++++|+|++||
T Consensus 184 ~~~~----g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg 259 (859)
T COG0308 184 TLVD----GRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFG 259 (859)
T ss_pred cccC----CcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcC
Confidence 5433 234568999999999999999999998876543 479999999998899999999999999999999999
Q ss_pred CCCCCCC
Q psy14860 704 VPYPLPK 710 (711)
Q Consensus 704 ~pYP~~K 710 (711)
+||||+|
T Consensus 260 ~~y~l~~ 266 (859)
T COG0308 260 LPYALPI 266 (859)
T ss_pred CCCCCcc
Confidence 9999997
No 16
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=99.70 E-value=1.6e-17 Score=190.78 Aligned_cols=126 Identities=19% Similarity=0.316 Sum_probs=105.1
Q ss_pred CCCCceeeeccccccccccccCCCCHHhHhhhhceeeeecceeEEeeeceeeecccCccccccceEEEeeccccccccee
Q psy14860 573 PSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLV 652 (711)
Q Consensus 573 ~~ek~~l~Tq~ep~~A~~~lpC~d~P~lka~~l~sii~~~~~~~vsn~~~~~~~~~g~~~~w~~~~~~f~~~~~~~tYl~ 652 (711)
..++..++|||||.+||++|||+|+|++|++|.++|.+| +.+++|+..+.... + +..+.+|+.++|||+||+
T Consensus 120 g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~~-~-----~~~~~~F~~t~pmptYLi 191 (601)
T TIGR02411 120 GKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGETS-N-----DPGKYLFKQKVPIPAYLI 191 (601)
T ss_pred CCCCCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCcccccc-C-----CCceEEEEeCCCcchhhh
Confidence 445566799999999999999999999999999999999 77776663222221 1 122457999999999999
Q ss_pred EEEEecceeEeeeecCCeEEEEEECCCChhhHHHHHH-HHHHHHHHHHHhhCCCCCCCCC
Q psy14860 653 AFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALN-TSTHMMDFYEEFFGVPYPLPKQ 711 (711)
Q Consensus 653 a~~vg~f~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~~l~~~e~~fg~pYP~~K~ 711 (711)
||+||+|+..+ .++++++|++|+..+++.++++ .++++|+++|+++| ||||+|+
T Consensus 192 a~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~ 246 (601)
T TIGR02411 192 ALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQY 246 (601)
T ss_pred eeeeccceecc----cCCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccc
Confidence 99999998754 4667999999999999999998 99999999999866 9999985
No 17
>KOG1047|consensus
Probab=99.17 E-value=1.2e-11 Score=133.32 Aligned_cols=127 Identities=23% Similarity=0.344 Sum_probs=107.1
Q ss_pred CCCCceeeeccccccccccccCCCCHHhHhhhhceeeeecceeEEeeeceee--ecccCccccccceEEEeecccccccc
Q psy14860 573 PSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITS--TDDVGFYMGTGLLRDDFQESVEMSTY 650 (711)
Q Consensus 573 ~~ek~~l~Tq~ep~~A~~~lpC~d~P~lka~~l~sii~~~~~~~vsn~~~~~--~~~~g~~~~w~~~~~~f~~~~~~~tY 650 (711)
..++..++||||..+||..|||+|.|+.|-+|...+-+|.++.+++++ +. ..+... +-....|..-.|+|.|
T Consensus 125 gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSa--i~~~~~~~~~----~~~~f~f~q~~pIP~Y 198 (613)
T KOG1047|consen 125 GKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSA--IPAGEKPGSN----GRAIFRFKQEVPIPSY 198 (613)
T ss_pred CCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeec--cccccCCCCC----CcceEEEEeccCchhh
Confidence 445466799999999999999999999999999999999999998887 33 222221 1233478999999999
Q ss_pred eeEEEEecceeEeeeecCCeEEEEEECCCChhhHHHHHH-HHHHHHHHHHHhhCCCCCCCC
Q psy14860 651 LVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALN-TSTHMMDFYEEFFGVPYPLPK 710 (711)
Q Consensus 651 l~a~~vg~f~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~~l~~~e~~fg~pYP~~K 710 (711)
|+||++|+....+ -++..+||++|+..+.+.+.+. .++++|..=|+.+| ||+|+.
T Consensus 199 Liai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~Wgr 254 (613)
T KOG1047|consen 199 LIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGR 254 (613)
T ss_pred hHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-Cccccc
Confidence 9999999988654 4667899999999999999998 99999999999999 999874
No 18
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.15 E-value=4.7e-11 Score=109.53 Aligned_cols=103 Identities=22% Similarity=0.329 Sum_probs=75.8
Q ss_pred hhhHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhccccCCCCCceeccCCh
Q psy14860 46 YTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTSHPISVTVHDP 125 (711)
Q Consensus 46 ~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~s~pi~~~v~~~ 125 (711)
..+++||++|+|+++.++.......|++||+|+|++.. + +.........++..+......++......
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 93 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGR--------I---EDEFDEDLKQAIESGSLPPLEPLNSSFDF- 93 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcC--------c---cchhHHHHHHHHHcCCCCChHHHhccccc-
Confidence 37999999999999999877788899999999999932 1 11223344445555554444444321111
Q ss_pred hhHhhccccccccchHHHHHHHHHhhChHHHHHHHHHH
Q psy14860 126 VEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDY 163 (711)
Q Consensus 126 ~~i~~~f~~i~Y~KGa~vl~ML~~~lG~~~F~~~l~~y 163 (711)
...+....|.+|++++++|....|+++|++.|+.|
T Consensus 94 ---~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 94 ---SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred ---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34456678999999999999999999999999875
No 19
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=98.74 E-value=5e-08 Score=104.74 Aligned_cols=64 Identities=53% Similarity=0.936 Sum_probs=56.5
Q ss_pred eEEEccCCeeeeeeecChhhHHHHHHHHhcccccCChhhhhhhHHHHHHhhhhcccCccccccccc
Q psy14860 300 WIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFL 365 (711)
Q Consensus 300 ~i~~N~~~~gyyrv~yd~~~~~~l~~~l~~~~~~~~~~~r~~l~~d~~~~~~~~~~~~~~~~~~~~ 365 (711)
||++|.+++|||||.||.++|+.|+++|.+++ |++.+|+++|+|+|++.+.+..+....|+...
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~--l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~ 64 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNH--LSPLDRAQLLDDLFALARAGRLSYSDFLDLLE 64 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHG--S-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHG
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 89999999999999999999999999999988 99999999999999999887777766665444
No 20
>KOG1932|consensus
Probab=98.60 E-value=1.6e-07 Score=108.94 Aligned_cols=152 Identities=19% Similarity=0.300 Sum_probs=102.2
Q ss_pred cchhhhHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhcccc----CCCCCc
Q psy14860 43 LSSYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDAL----STSHPI 118 (711)
Q Consensus 43 ~~~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~----~~s~pi 118 (711)
+.....+|-.+|-||||..+|+..|+|.||-+|+|.|+..+++++..|...+.-+ +......+.+.|-. ..+.|+
T Consensus 339 ~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~-lKk~~d~V~~~d~~~g~i~l~~Pi 417 (1180)
T KOG1932|consen 339 FLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQ-LKKALDAVVDYDVQKGAIYLTRPI 417 (1180)
T ss_pred HHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHH-HHHHHHHHHHhhhccCceeeccCC
Confidence 3445689999999999999999999999999999999999999999986543322 34445555555542 122233
Q ss_pred eeccC----Ch----------hhHhhccccccccchHHHHHHHHHhhChHHHHHHHHHHHhhhccCCCCHHHHHHHHHhh
Q psy14860 119 SVTVH----DP----------VEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAETKDFWSVLSKH 184 (711)
Q Consensus 119 ~~~v~----~~----------~~i~~~f~~i~Y~KGa~vl~ML~~~lG~~~F~~~l~~yl~~~~~~~a~~~df~~~l~~~ 184 (711)
..... .+ ...+..|..---.|+..+.+|+++.+|.+-|.+.+++-+.. +
T Consensus 418 ~~s~k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~-----------------~ 480 (1180)
T KOG1932|consen 418 SPSMKFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLEL-----------------A 480 (1180)
T ss_pred CcchhhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh-----------------h
Confidence 32111 00 00011111111247788888888888888877666554432 3
Q ss_pred cCCCccHHHHHhhhhcccCcceEEEEecCC
Q psy14860 185 SNHSINVKAIMDTWSRQMGFPVIRISRITP 214 (711)
Q Consensus 185 ~~~~~~l~~~~~~W~~q~G~P~v~v~~~~~ 214 (711)
+.. -++.+++.|++..|+|++.+....|
T Consensus 481 ~~~--~~k~~~~~Wv~~~g~~~~r~~~~~N 508 (1180)
T KOG1932|consen 481 SKM--LLKSFFQTWVYGLGVPILRLGQRFN 508 (1180)
T ss_pred hhh--HHHHHHHHHHhccCCeeEEEEEEEe
Confidence 331 3588999999999999999986655
No 21
>KOG1932|consensus
Probab=98.33 E-value=8.1e-07 Score=103.34 Aligned_cols=128 Identities=16% Similarity=0.271 Sum_probs=104.2
Q ss_pred ceeeecccc-ccccccccCCCCHHhHhhhhceeeeecceeEEeeeceeeecccCccccccceEEEeecccccccceeEEE
Q psy14860 577 YLATTHFEP-TYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFV 655 (711)
Q Consensus 577 ~~l~Tq~ep-~~A~~~lpC~d~P~lka~~l~sii~~~~~~~vsn~~~~~~~~~g~~~~w~~~~~~f~~~~~~~tYl~a~~ 655 (711)
...++..|- .+||.||||.|.++-++++.+..+.|....+++++.++......+ + .-.+.+|.-+.|++..-+||+
T Consensus 173 hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D-~--~Kkt~~ys~tvPvA~~~I~~A 249 (1180)
T KOG1932|consen 173 HVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPD-L--RKKTYHYSLTVPVAPSNIGFA 249 (1180)
T ss_pred ceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhheeeccc-c--cccEEEEEEeccCCcccccee
Confidence 343444443 348999999999999999999999999999999987665443332 2 223458999999999999999
Q ss_pred EecceeEeeeecCCeEEEEEECCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy14860 656 VCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMDFYEEFFGVPYPLP 709 (711)
Q Consensus 656 vg~f~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~pYP~~ 709 (711)
||+|..+.. +..+++..++-|+........--...++++|||++++..|||+
T Consensus 250 iG~F~~~~~--P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~ 301 (1180)
T KOG1932|consen 250 IGPFKSYVE--PSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFS 301 (1180)
T ss_pred eccccccCC--CccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcc
Confidence 999998732 3578899999999988888888889999999999999889986
No 22
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.63 E-value=0.00045 Score=75.63 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=101.3
Q ss_pred hhHHHHHHhhhcCCccccCC-C----------ChhhhhHhHHHHHHHHHHHhhCCCccHHHHHHH---HHHHHHhhcccc
Q psy14860 47 TTRDGKKKYQWFGNLVTMRW-W----------NDLWLSEGFASFLEYYGVDHVMPGWNMMDQFIL---DKTQQALGLDAL 112 (711)
Q Consensus 47 ~viaHEiaHQWfGnlVt~~~-w----------~~~WLnEGfA~y~~~~~~~~~~~~~~~~~~f~~---~~~~~al~~D~~ 112 (711)
.+++||..|-|-+--+-++- | ..+|+.|||++|+.....-...- --.++|+. +.+..... -..
T Consensus 249 ~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl--~~~~~~l~~la~tl~~~~~-~~g 325 (558)
T COG3975 249 GLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGL--ISLETYLNYLAKTLARYLN-TPG 325 (558)
T ss_pred HHHHHHHHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHhc-CCc
Confidence 58999999999887776543 3 46999999999999877644321 11233322 22211111 111
Q ss_pred CCCCCceec-------cCChhhHhhcccccc--ccchHHHHHHHHHhh-----ChHHHHHHHHHHHhhhcc--CCCCHHH
Q psy14860 113 STSHPISVT-------VHDPVEIEAIFDTIS--YSKGAAILYMLEKFL-----GQGTLRAGLNDYLNTHKY--GNAETKD 176 (711)
Q Consensus 113 ~~s~pi~~~-------v~~~~~i~~~f~~i~--Y~KGa~vl~ML~~~l-----G~~~F~~~l~~yl~~~~~--~~a~~~d 176 (711)
.--+|+... ...++. ..-..+. |.||+.|--+|.-.| |+..+...++.+.+.+.. +..+++|
T Consensus 326 Rl~~~laEsS~~awik~yr~d~--ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~ 403 (558)
T COG3975 326 RLRQSLAESSFDAWIKYYRPDE--NSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPED 403 (558)
T ss_pred eecccccccccchhHHhhcccc--cccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHH
Confidence 111122110 001110 1112233 999999988888777 466688888888887765 7789999
Q ss_pred HHHHHHhhcCCCccHHHHHhhhhcccCcceEEE
Q psy14860 177 FWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRI 209 (711)
Q Consensus 177 f~~~l~~~~~~~~~l~~~~~~W~~q~G~P~v~v 209 (711)
+...++++++. ++.+|++..+++.--|.+.-
T Consensus 404 v~av~~~~tg~--dl~~f~~~~i~~~~~~~l~~ 434 (558)
T COG3975 404 VQAVLENVTGL--DLATFFDEYIEGTEPPPLNP 434 (558)
T ss_pred HHHHHHhhccc--cHHHHHHHHhhcCCCCChhh
Confidence 99999999997 99999999999987666543
No 23
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.10 E-value=0.003 Score=67.67 Aligned_cols=167 Identities=13% Similarity=0.123 Sum_probs=100.2
Q ss_pred ccccccceeeeeccc--ccCCCCCcccchhhhHHHHHHhh--hcCCccccCC--CChhhhhHhHHHHHHHHHHHhhCCCc
Q psy14860 19 RKKTNYTLILRYYTR--LNQDMEGFYLSSYTTRDGKKKYQ--WFGNLVTMRW--WNDLWLSEGFASFLEYYGVDHVMPGW 92 (711)
Q Consensus 19 ~~~en~gl~~~~~~~--~~~~~~~~~~~~~~viaHEiaHQ--WfGnlVt~~~--w~~~WLnEGfA~y~~~~~~~~~~~~~ 92 (711)
..-.|.|.++-.+.. ...+..+ ...-+.++|||+-|+ +--+.|...- -.|+|||||+|.-+|.++.....+..
T Consensus 112 ~~~SNe~e~~YiD~~~~~~~~~~~-~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~ 190 (366)
T PF10460_consen 112 NPYSNESEYFYIDSETLYLGGNSG-PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGY 190 (366)
T ss_pred cCCCcceeEEEEecHHhhccCCcc-HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCccc
Confidence 455677777654433 2233333 223467999999998 3334444432 36999999999999999887775321
Q ss_pred c-HHHHHHHHHHHHHhhccccCCCCCceeccCChhhHhhccccccccchHHHHHHHHHhhChHHHHHHHHHHHhhhccCC
Q psy14860 93 N-MMDQFILDKTQQALGLDALSTSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN 171 (711)
Q Consensus 93 ~-~~~~f~~~~~~~al~~D~~~~s~pi~~~v~~~~~i~~~f~~i~Y~KGa~vl~ML~~~lG~~~F~~~l~~yl~~~~~~~ 171 (711)
. ..+. ....-.........+.+..- ....+ .-.+|....++..-|....|.+.+++.|.. ...
T Consensus 191 n~i~d~----R~~~y~~~~~~~~~~~l~~w-~~~g~-----~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~ 254 (366)
T PF10460_consen 191 NNIRDS----RIPYYNNYTSGNYNCSLTAW-SSFGD-----SLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSS 254 (366)
T ss_pred Cccccc----cHHHHhhccccCCCcceeec-CCCcc-----ccccchhHHHHHHHHHHHcChHHHHHHHhc------CCC
Confidence 1 1111 00000111111222333221 11111 124699999999988888899888777652 234
Q ss_pred CCHHHHHHHHHhhcCCCccHHHHHhhhhccc
Q psy14860 172 AETKDFWSVLSKHSNHSINVKAIMDTWSRQM 202 (711)
Q Consensus 172 a~~~df~~~l~~~~~~~~~l~~~~~~W~~q~ 202 (711)
.+.++..++..+..+...++.++|..|..--
T Consensus 255 tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 255 TDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred CcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 6788877777665544468999999997765
No 24
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.62 E-value=0.0058 Score=55.85 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=29.0
Q ss_pred hhHHHHHHhhhcCCccccCCC--ChhhhhHhHHHHHHHHHH
Q psy14860 47 TTRDGKKKYQWFGNLVTMRWW--NDLWLSEGFASFLEYYGV 85 (711)
Q Consensus 47 ~viaHEiaHQWfGnlVt~~~w--~~~WLnEGfA~y~~~~~~ 85 (711)
.|++||-+||=.-|.=-..-- .=.|+.||||+|+|....
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 589999999987664322221 238999999999997665
No 25
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=94.23 E-value=2.8 Score=45.74 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=52.5
Q ss_pred eeeEEEEeeeecCCCCCCCCCCCCCCCCCCCCceEEEEEEEEEcCC-Cce-e---eEEEEecCceeEEecCC--CCceEE
Q psy14860 230 IEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQT-GYK-E---QEIVWMNMTDVTFKLPN--SIKWIK 302 (711)
Q Consensus 230 ~~~~l~Q~rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~~~~~-~~~-~---~~~~~~~~~~~~~~~~~--~~~~i~ 302 (711)
.+++++|+.--..+ ......|+|||.+-.-+. |.. . ..++.++..+.++.+.+ ..-...
T Consensus 5 ~~Ltl~Q~~p~tpg--------------q~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~~~PvpS 70 (367)
T PF11940_consen 5 YTLTLSQSTPPTPG--------------QPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVSEKPVPS 70 (367)
T ss_dssp EEEEEEEEE--BTT--------------BSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES---S--EEE
T ss_pred EEEEEEecCCCCCC--------------CCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCCCCceee
Confidence 46788998522111 123567999999865433 321 1 35677787777777532 223788
Q ss_pred EccCCeeeeeeecChhhHHHHHHHHhcccccCChhhhhhhH
Q psy14860 303 ANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLI 343 (711)
Q Consensus 303 ~N~~~~gyyrv~yd~~~~~~l~~~l~~~~~~~~~~~r~~l~ 343 (711)
++.+.+.++++.|+ .+=+.|.-.+..+++.+..-+.+|-+
T Consensus 71 llRgFSAPV~l~~~-~s~~eL~~L~~~D~D~FnRWdA~Q~L 110 (367)
T PF11940_consen 71 LLRGFSAPVKLEYD-YSDEELAFLAAHDSDPFNRWDAAQTL 110 (367)
T ss_dssp ESTTG-SSSEEE-----HHHHHHHHHH-SSHHHHHHHHHHH
T ss_pred hhcCcccceEecCC-CCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 99999999999996 56667776677766655444444433
No 26
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=92.80 E-value=0.062 Score=48.72 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=34.1
Q ss_pred hhhHHHHHHhhhcCCcccc-----------CCCChhhhhHhHHHHHHHHHHHhh
Q psy14860 46 YTTRDGKKKYQWFGNLVTM-----------RWWNDLWLSEGFASFLEYYGVDHV 88 (711)
Q Consensus 46 ~~viaHEiaHQWfGnlVt~-----------~~w~~~WLnEGfA~y~~~~~~~~~ 88 (711)
..++|||.-|.|-|-.+.| .--+.+|+-|||++|++.+...+.
T Consensus 5 l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 5 LGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 3589999999998766644 334568999999999999877654
No 27
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=85.35 E-value=1 Score=47.93 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=28.2
Q ss_pred hhhHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHhh
Q psy14860 46 YTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV 88 (711)
Q Consensus 46 ~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~~ 88 (711)
..+|-||+|||= |-.+ +|.=+||+||++++..++...
T Consensus 166 A~LIfHELaHq~----~Yv~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 166 ARLIFHELAHQT----LYVK--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHhhce----eecC--CCchhhHHHHHHHHHHHHHHH
Confidence 369999999993 2222 366789999999999887644
No 28
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=85.17 E-value=1.2 Score=47.60 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=35.3
Q ss_pred Hhhhccccccceeeeec--ccccCCCCCcccchhhhHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHh
Q psy14860 15 KENLRKKTNYTLILRYY--TRLNQDMEGFYLSSYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDH 87 (711)
Q Consensus 15 ~~~~~~~en~gl~~~~~--~~~~~~~~~~~~~~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~ 87 (711)
+..+..|---|...... ...+.++|..... .|+|||+|||= + ...|+=|+|+++++..+
T Consensus 166 S~~~s~~g~~Gyy~PFT~EA~vN~~~p~~~~P--~T~~HElAHq~-----G-------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 166 SRLMSYMGISGYYNPFTGEANVNTDLPPYSLP--FTICHELAHQL-----G-------FASEDEANFIAYLACIN 226 (318)
T ss_pred cHHHHHccCceEEcCCcceeecCCCCCccccc--HHHHHHHHHHh-----C-------CCCHHHHHHHHHHHHhc
Confidence 33444444444443333 3334444443333 49999999993 2 33788899999998654
No 29
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=73.23 E-value=2.8 Score=41.83 Aligned_cols=107 Identities=22% Similarity=0.274 Sum_probs=61.6
Q ss_pred hhhhHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhccccCCCCCceeccCC
Q psy14860 45 SYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTSHPISVTVHD 124 (711)
Q Consensus 45 ~~~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~s~pi~~~v~~ 124 (711)
-..++.||++|-|=.+--. -.--||-||+|.|+..++-- .-+.|. .|...
T Consensus 96 i~Gvl~HE~~H~~Q~~~~~---~~P~~liEGIADyVRl~aG~-~~~~w~----------------------~p~~~---- 145 (205)
T PF04450_consen 96 IIGVLYHEMVHCWQWDGRG---TAPGGLIEGIADYVRLKAGY-APPHWK----------------------RPGGG---- 145 (205)
T ss_pred HHHHHHHHHHHHhhcCCCC---CCChhheecHHHHHHHHcCC-CCcccc----------------------CCCCC----
Confidence 3479999999976544322 12459999999999876410 011111 11110
Q ss_pred hhhHhhccccccccchHHHHHHHHH-hhChHHHHHHHHHHHhhhccCCCCHHHHHHHHHhhcCCCccHHHHHh
Q psy14860 125 PVEIEAIFDTISYSKGAAILYMLEK-FLGQGTLRAGLNDYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMD 196 (711)
Q Consensus 125 ~~~i~~~f~~i~Y~KGa~vl~ML~~-~lG~~~F~~~l~~yl~~~~~~~a~~~df~~~l~~~~~~~~~l~~~~~ 196 (711)
..++ -.|.-.|.+|.-|+. ..|+ .|.+-|.+=+.+..| +.+++|..+ .|+ ++.++++
T Consensus 146 -----~~wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~l---~G~--~v~~LW~ 203 (205)
T PF04450_consen 146 -----DSWD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKEL---LGK--PVDELWA 203 (205)
T ss_pred -----CCcc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHHH---HCc--CHHHHHh
Confidence 1222 357788888888887 5553 344445444444444 556666554 465 6766654
No 30
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=68.82 E-value=5.2 Score=40.63 Aligned_cols=36 Identities=25% Similarity=0.140 Sum_probs=28.2
Q ss_pred hhHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHhh
Q psy14860 47 TTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHV 88 (711)
Q Consensus 47 ~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~~ 88 (711)
.+|-||+|||=|. .+ +|.=+||+||+..|..++.+.
T Consensus 199 ~LIFHELAHQk~Y----~~--~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 199 SLIFHELAHQKIY----VN--NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHhhheEe----ec--CcchHhHHHHHHHHHHhHHHH
Confidence 6899999999532 11 466789999999999888654
No 31
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=59.67 E-value=6 Score=34.63 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=10.2
Q ss_pred hhHHHHHHhhh
Q psy14860 47 TTRDGKKKYQW 57 (711)
Q Consensus 47 ~viaHEiaHQW 57 (711)
.+++||++|-|
T Consensus 81 ~TL~HEL~H~W 91 (141)
T PHA02456 81 DTLAHELNHAW 91 (141)
T ss_pred HHHHHHHHHHH
Confidence 49999999999
No 32
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=51.63 E-value=21 Score=35.43 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=28.9
Q ss_pred hhHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHh
Q psy14860 47 TTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDH 87 (711)
Q Consensus 47 ~viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~ 87 (711)
.++|||+-|-|.- ..-----+..+-||++..+++.+++.
T Consensus 95 siLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 95 SILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred hHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 3899999999951 11111236789999999999988764
No 33
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=48.73 E-value=12 Score=36.94 Aligned_cols=43 Identities=9% Similarity=-0.069 Sum_probs=28.6
Q ss_pred hhHHHHHHhhhcCCcccc----CCCChhhhhHhHHHHHHHHHHHhhC
Q psy14860 47 TTRDGKKKYQWFGNLVTM----RWWNDLWLSEGFASFLEYYGVDHVM 89 (711)
Q Consensus 47 ~viaHEiaHQWfGnlVt~----~~w~~~WLnEGfA~y~~~~~~~~~~ 89 (711)
.++|||+.|-+--..+.. ..--|.-+.||+|.+++........
T Consensus 67 ~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 67 ALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 599999999853222211 1123567899999999887665444
No 34
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=40.76 E-value=14 Score=35.77 Aligned_cols=12 Identities=17% Similarity=-0.144 Sum_probs=10.7
Q ss_pred hhhHHHHHHhhh
Q psy14860 46 YTTRDGKKKYQW 57 (711)
Q Consensus 46 ~~viaHEiaHQW 57 (711)
..++||||+||+
T Consensus 112 ~~~~aHElGH~l 123 (173)
T PF13574_consen 112 IDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehhhhHhhc
Confidence 468999999997
No 35
>KOG2661|consensus
Probab=33.84 E-value=28 Score=36.76 Aligned_cols=22 Identities=5% Similarity=-0.431 Sum_probs=15.3
Q ss_pred CCcccchhhhHHHHHHhhhcCC
Q psy14860 39 EGFYLSSYTTRDGKKKYQWFGN 60 (711)
Q Consensus 39 ~~~~~~~~~viaHEiaHQWfGn 60 (711)
+..+.....+++||+|||=-+.
T Consensus 269 ck~ddglAtvLgHE~aHaVarH 290 (424)
T KOG2661|consen 269 CKDDDGLATVLGHEIAHAVARH 290 (424)
T ss_pred ccChHHHHHHHHHHHHHHHHHH
Confidence 3344444579999999996554
No 36
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=33.36 E-value=31 Score=33.84 Aligned_cols=14 Identities=14% Similarity=-0.128 Sum_probs=12.8
Q ss_pred hhHHHHHHhhhcCC
Q psy14860 47 TTRDGKKKYQWFGN 60 (711)
Q Consensus 47 ~viaHEiaHQWfGn 60 (711)
.|+.||+||-++|+
T Consensus 84 ~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 84 GTMLHELAHNVHGP 97 (186)
T ss_pred HHHHHHHHhcccCC
Confidence 69999999999887
No 37
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=32.34 E-value=15 Score=32.36 Aligned_cols=18 Identities=6% Similarity=-0.326 Sum_probs=14.2
Q ss_pred hhhHHHHHHhhhcCCccc
Q psy14860 46 YTTRDGKKKYQWFGNLVT 63 (711)
Q Consensus 46 ~~viaHEiaHQWfGnlVt 63 (711)
..+++||++|.+++.--.
T Consensus 43 ~f~laHELgH~~~~~~~~ 60 (122)
T PF06114_consen 43 RFTLAHELGHILLHHGDE 60 (122)
T ss_dssp HHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 469999999999877653
No 38
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=30.82 E-value=84 Score=34.66 Aligned_cols=51 Identities=20% Similarity=0.321 Sum_probs=36.0
Q ss_pred hHHHHHHhhhcCCccccCCCChhhhhHhHHHHHHHHHHHhhCCCccHHHHHHHHHHH
Q psy14860 48 TRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQ 104 (711)
Q Consensus 48 viaHEiaHQWfGnlVt~~~w~~~WLnEGfA~y~~~~~~~~~~~~~~~~~~f~~~~~~ 104 (711)
.|..++| |.|--..+.+ -||||.|+|..|.++.+++.+-+.-+.+...-++
T Consensus 252 ~ivR~ea-~YF~PQ~qTk-----VMNEGWAtfWHytiln~lydE~~~~~~~~lEfL~ 302 (495)
T COG2719 252 RIVRKEA-QYFYPQRQTK-----VMNEGWATFWHYTILNHLYDEGKLTERAMLEFLK 302 (495)
T ss_pred HHHHHHH-HHhcchHHHH-----HhhhhHHHHHHHHHHHhhhhhcccChHHHHHHHH
Confidence 4455555 4555555444 6899999999999999988877766666555443
No 39
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=30.68 E-value=26 Score=33.00 Aligned_cols=14 Identities=7% Similarity=-0.441 Sum_probs=11.9
Q ss_pred hhhHHHHHHhhhcC
Q psy14860 46 YTTRDGKKKYQWFG 59 (711)
Q Consensus 46 ~~viaHEiaHQWfG 59 (711)
..||.||++|.|..
T Consensus 61 ~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 61 IDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHhh
Confidence 46999999999963
No 40
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=29.78 E-value=27 Score=32.79 Aligned_cols=13 Identities=8% Similarity=-0.429 Sum_probs=11.2
Q ss_pred hhHHHHHHhhhcC
Q psy14860 47 TTRDGKKKYQWFG 59 (711)
Q Consensus 47 ~viaHEiaHQWfG 59 (711)
.||.|||||.+..
T Consensus 61 ~~l~HEm~H~~~~ 73 (146)
T smart00731 61 ETLLHELCHAALY 73 (146)
T ss_pred hhHHHHHHHHHHH
Confidence 5999999999853
No 41
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=25.17 E-value=32 Score=36.18 Aligned_cols=38 Identities=3% Similarity=-0.208 Sum_probs=24.4
Q ss_pred ccceeeeecccccCCCCCcccchhhhHHHHHHhhhcCCccc
Q psy14860 23 NYTLILRYYTRLNQDMEGFYLSSYTTRDGKKKYQWFGNLVT 63 (711)
Q Consensus 23 n~gl~~~~~~~~~~~~~~~~~~~~~viaHEiaHQWfGnlVt 63 (711)
+.|.+..+...+.. .... +-..|++||++|.=-++.++
T Consensus 138 ~~~~V~vt~gLl~~-l~~d--El~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 138 KNGRVVVTTGLLDL-LNDD--ELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred CCeeEEecHHHHhh-CCHH--HHHHHHHHHHHHHhcccHHH
Confidence 44666666666652 2222 23359999999987666665
No 42
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=24.30 E-value=38 Score=33.14 Aligned_cols=12 Identities=8% Similarity=-0.258 Sum_probs=10.5
Q ss_pred hhhHHHHHHhhh
Q psy14860 46 YTTRDGKKKYQW 57 (711)
Q Consensus 46 ~~viaHEiaHQW 57 (711)
..++||||+|.+
T Consensus 143 ~~~~AHEiGH~l 154 (196)
T PF13688_consen 143 AITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHT
T ss_pred ehhhHHhHHHhc
Confidence 369999999997
No 43
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=23.98 E-value=3.1e+02 Score=33.30 Aligned_cols=129 Identities=9% Similarity=0.148 Sum_probs=72.2
Q ss_pred hhHHHHHHhhhcCCcc-ccCCCChhhhhHhHHHHHHHHHHHhhC---CCccH---HHHHHHHHHHHHhhccccCCCCCce
Q psy14860 47 TTRDGKKKYQWFGNLV-TMRWWNDLWLSEGFASFLEYYGVDHVM---PGWNM---MDQFILDKTQQALGLDALSTSHPIS 119 (711)
Q Consensus 47 ~viaHEiaHQWfGnlV-t~~~w~~~WLnEGfA~y~~~~~~~~~~---~~~~~---~~~f~~~~~~~al~~D~~~~s~pi~ 119 (711)
+.+-|||+|..=|..+ .-..+++.| |-=||.++++....... ..|-+ ....+...+...+..+ .|+
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~i~~~-----~~~- 310 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIALIDNN-----KPF- 310 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHHHhcC-----CCc-
Confidence 3678999999988888 334567888 67889999886654211 12322 0111111121111111 121
Q ss_pred eccCChhhHhhcccccc-ccchHHHHHHHHHhhChHHHHHHHHHHHhhhccCC--CCHHHHHHHHHhh-cCCCccHHHHH
Q psy14860 120 VTVHDPVEIEAIFDTIS-YSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGN--AETKDFWSVLSKH-SNHSINVKAIM 195 (711)
Q Consensus 120 ~~v~~~~~i~~~f~~i~-Y~KGa~vl~ML~~~lG~~~F~~~l~~yl~~~~~~~--a~~~df~~~l~~~-~~~~~~l~~~~ 195 (711)
+... -.|=..+..|+...-|++.|+..-+.|-+. .-.+ ...-++++-+... ++ .|+..++
T Consensus 311 -------------~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~--~D~~p~~ 374 (775)
T PF03272_consen 311 -------------DSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSG--YDFTPYF 374 (775)
T ss_pred -------------ccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcC--CchHhHH
Confidence 1111 235555556788889999998877777665 2222 2222333444444 55 4888888
Q ss_pred hhh
Q psy14860 196 DTW 198 (711)
Q Consensus 196 ~~W 198 (711)
+.|
T Consensus 375 ~l~ 377 (775)
T PF03272_consen 375 QLV 377 (775)
T ss_pred HHh
Confidence 888
No 44
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=22.08 E-value=44 Score=27.84 Aligned_cols=13 Identities=0% Similarity=-0.345 Sum_probs=10.3
Q ss_pred hhhhHHHHHHhhh
Q psy14860 45 SYTTRDGKKKYQW 57 (711)
Q Consensus 45 ~~~viaHEiaHQW 57 (711)
...+++||++|=+
T Consensus 61 ~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 61 GRALLAHELAHVV 73 (79)
T ss_pred cchhHhHHHHHHH
Confidence 3469999999954
No 45
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=22.05 E-value=2.2e+02 Score=23.21 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhhhccCCCCHHHHHHHHHhhcCC
Q psy14860 141 AAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAETKDFWSVLSKHSNH 187 (711)
Q Consensus 141 a~vl~ML~~~lG~~~F~~~l~~yl~~~~~~~a~~~df~~~l~~~~~~ 187 (711)
+.++.+|...++.+.+ .-|..+.++++-+-++-++|.+.+...+|.
T Consensus 12 ~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 12 PMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 5788999999999985 556677788888999999999999998885
No 46
>PRK04860 hypothetical protein; Provisional
Probab=21.46 E-value=49 Score=31.64 Aligned_cols=12 Identities=0% Similarity=-0.352 Sum_probs=10.4
Q ss_pred hhhHHHHHHhhh
Q psy14860 46 YTTRDGKKKYQW 57 (711)
Q Consensus 46 ~~viaHEiaHQW 57 (711)
..||+||+||-|
T Consensus 64 ~~~v~HEl~H~~ 75 (160)
T PRK04860 64 DEVVPHELAHLL 75 (160)
T ss_pred HhHHHHHHHHHH
Confidence 369999999987
No 47
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.23 E-value=4.3e+02 Score=25.43 Aligned_cols=34 Identities=29% Similarity=0.561 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCCCChhhHhhH---HHHHHH--HHHcCCc
Q psy14860 399 DALIQALKTNHEVFSPADRASL---IDDAFT--LSRAGLV 433 (711)
Q Consensus 399 ~~l~~~l~~~~~~~~~~~r~~l---i~D~~~--l~~~g~l 433 (711)
+..++.|+.+ ..|++.+|+++ |.|+|+ .+-++++
T Consensus 80 ~~tmeel~~~-~~~~~~~k~~~LasLaDsf~K~vaaskr~ 118 (165)
T PF08822_consen 80 QATMEELKEN-EDMPPQEKVELLASLADSFSKMVAASKRV 118 (165)
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666777644 58999999999 578888 3345554
No 48
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=21.19 E-value=48 Score=31.36 Aligned_cols=11 Identities=0% Similarity=-0.230 Sum_probs=9.6
Q ss_pred hhhHHHHHHhh
Q psy14860 46 YTTRDGKKKYQ 56 (711)
Q Consensus 46 ~~viaHEiaHQ 56 (711)
.-|+|||++|-
T Consensus 136 lDVvaHEltHG 146 (150)
T PF01447_consen 136 LDVVAHELTHG 146 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred cceeeeccccc
Confidence 46999999995
No 49
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=20.22 E-value=3.1e+02 Score=21.54 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=34.1
Q ss_pred CCChhhHhhHHHHHHH-HHH-cCCcchhh--H----HHHHHhhhhCCCcccHHHHHHhH
Q psy14860 411 VFSPADRASLIDDAFT-LSR-AGLVNATV--P----LELSTYLLKEKDYVPWATALEHF 461 (711)
Q Consensus 411 ~~~~~~r~~li~D~~~-l~~-~g~l~~~~--~----l~l~~~l~~e~~~~~w~~~~~~l 461 (711)
.+|+.+|++|+.+.+. |+. ...++... . =.+-.|-..+...+||..+...+
T Consensus 2 ~L~~~ERl~Lve~LwdSL~~~~~~~~~~~~~~~el~~R~~~~~~g~~~~i~~eev~~~i 60 (63)
T TIGR02574 2 ALSPDERIQLVEDIWDSIAAEAKHLILTEAQKAELDRRLADYKADPSKASPWEEVRARI 60 (63)
T ss_pred CCCHHHHHHHHHHHHHHhccCcccCCCCHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHH
Confidence 5799999999999998 553 22333221 1 23445556788889998886654
Done!