RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14860
(711 letters)
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 417 bits (1074), Expect = e-134
Identities = 132/547 (24%), Positives = 209/547 (38%), Gaps = 134/547 (24%)
Query: 56 QWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTS 115
QWFGNLVTM WWNDLWL+EGFA F+E+ V P + D F A+ +DAL++S
Sbjct: 313 QWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGK-CFDAMEVDALNSS 371
Query: 116 HPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAETK 175
HP+S V +P +I +FD +SY KGA IL ML ++L ++G+ YL H Y N + +
Sbjct: 372 HPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNE 431
Query: 176 DFWSVLSKHSNHS-------------------------INVKAIMDTWSRQMGFPVIRIS 210
D W ++ ++VK +M+TW+ Q GFP+I I+
Sbjct: 432 DLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITIT 491
Query: 211 RITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSY 270
Q ++ ++ Y W+VPL++
Sbjct: 492 V-------RGRN---------VHMKQEHYMKGSD-----------GAPDTGYLWHVPLTF 524
Query: 271 YTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTN 330
T + LP ++WIK NV +G+Y V Y+D WD+L LK
Sbjct: 525 ITS--KSDMVHRFLLKTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGT 582
Query: 331 HEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYR 390
H S DRASLI++AF L + S E L+L S + +
Sbjct: 583 HTAVSSNDRASLINNAFQLVSIGKLSIEKALDL----------------------SLYLK 620
Query: 391 VTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKD 450
+ + L +++ D + +L++
Sbjct: 621 HETEIMPVFQGLNELIPMYKLMEKRDMNEVETQ-----------------FKAFLIR--- 660
Query: 451 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDIL 510
L + K W D GS E+++RS +L
Sbjct: 661 -------------------------LLRDLIDKQ--------TWTDEGSVSERMLRSQLL 687
Query: 511 AAAVLVGVDTVVKESKSKFNGWMEKGF--RIPPNLREVVYYAGIKYGGVKEWQNCWAKYN 568
A + V+ ++ F W E +P ++ V+ + + W ++KY
Sbjct: 688 LLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQ 745
Query: 569 STRVPSE 575
+ +E
Sbjct: 746 FSLSSTE 752
Score = 187 bits (476), Expect = 6e-50
Identities = 67/137 (48%), Positives = 96/137 (70%), Gaps = 4/137 (2%)
Query: 575 EPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGT 634
LA+T FEPT AR AFPCFDEP FKA F + I R+ H+++ NMP+ + V
Sbjct: 129 LRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVA----E 184
Query: 635 GLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHM 694
GL+ D F +V+MSTYLVAF++ D+++++ +T GV VSVYA PD + QA +AL+ + +
Sbjct: 185 GLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTL 244
Query: 695 MDFYEEFFGVPYPLPKQ 711
++FYE++F +PYPLPKQ
Sbjct: 245 LEFYEDYFSIPYPLPKQ 261
Score = 57.5 bits (139), Expect = 1e-08
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 2 LEYSAGQQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKKYQ 56
LE+ +Q+ + E L YT+++ Y L++ GFY S+Y T++G+ +
Sbjct: 78 LEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELRIL 132
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 365 bits (938), Expect = e-114
Identities = 105/333 (31%), Positives = 149/333 (44%), Gaps = 49/333 (14%)
Query: 56 QWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTS 115
QWFGNLVTM WWND+WL+EGFA ++E V+ P D F+ + + + D+L++S
Sbjct: 375 QWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFL-NVCFEVITKDSLNSS 433
Query: 116 HPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAETK 175
PIS P +I+ +FD +SY+KGA IL ML+ FLG+ + G+ YL Y NA+
Sbjct: 434 RPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKND 493
Query: 176 DFWSVLSKHSNHS-------------------------INVKAIMDTWSRQMGFPVIRIS 210
D WS LS S VK +M TW+ Q G P++ +
Sbjct: 494 DLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVK 553
Query: 211 RITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSY 270
+ + + Q RFL G Y W++PL+Y
Sbjct: 554 Q-------DGCS---------LRLQQERFLQ-----GVFQEDPEWRALQERYLWHIPLTY 592
Query: 271 YTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTN 330
T + T LP W+K NV+ +G+Y V Y+ H WD LI L N
Sbjct: 593 STS--SSNVIHRHILKSKTDTLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQN 650
Query: 331 HEVFSPADRASLIDDAFTLSRLYSFSTEDNLNL 363
H + P DR LI D F L + + L++
Sbjct: 651 HTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDM 683
Score = 228 bits (582), Expect = 8e-64
Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 10/231 (4%)
Query: 353 YSFSTEDNLNLFL---SPVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNH 409
YS S+ + ++ + T LP W+K NV+ +G+Y V Y+ H WD LI L NH
Sbjct: 592 YSTSSSNVIHRHILKSKTDTLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNH 651
Query: 410 EVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLS 469
+ P DR LI D F L AG + L+++ YL E L + + + +
Sbjct: 652 TLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMD 711
Query: 470 EASP---YRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESK 526
+ ++Y+ + P+ W D GS ++++RS +L A + ++++
Sbjct: 712 RRNISDISENLKRYLLQYFKPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAA 771
Query: 527 SKFNGWMEKG--FRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSE 575
F+ WME IP ++ ++VY G + W +Y + +E
Sbjct: 772 ELFSQWMESSGKLNIPTDVLKIVYSVGAQTTA--GWNYLLEQYELSMSSAE 820
Score = 185 bits (472), Expect = 2e-49
Identities = 68/135 (50%), Positives = 90/135 (66%), Gaps = 4/135 (2%)
Query: 577 YLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGL 636
LA T FEPT AR AFPCFDEP FKA F + I R+ HI+L NMP T ++ GL
Sbjct: 193 ILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELE----GGL 248
Query: 637 LRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMD 696
L D F+ +V+MSTYLVA++VCD+ +++ T+ GV VS+YA PD Q +AL S ++D
Sbjct: 249 LEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLD 308
Query: 697 FYEEFFGVPYPLPKQ 711
FYE++F + YPL K
Sbjct: 309 FYEKYFDIYYPLSKL 323
Score = 59.8 bits (145), Expect = 2e-09
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 2 LEYSAGQQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKKY 55
L Y A +Q+ + E L Y + + + +L EGFY S+Y T G+ +
Sbjct: 140 LSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTLGGETRI 193
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 350 bits (899), Expect = e-110
Identities = 105/308 (34%), Positives = 148/308 (48%), Gaps = 45/308 (14%)
Query: 56 QWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTS 115
QWFG+LVTM+WWNDLWL+E FA+F+ Y +D + P W+ F + +T AL D+L +
Sbjct: 270 QWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNT 329
Query: 116 HPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAETK 175
HPI V V DP EI IFD ISY KGA+IL M+E + G R G++ YLN HK+GNAE
Sbjct: 330 HPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGS 389
Query: 176 DFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSAT 235
D W+ + S VK +M+ W + G+PVI++ R + +
Sbjct: 390 DLWTAIEDVSG--KPVKRVMEYWIKNPGYPVIKLKRNGRK----------------ITMY 431
Query: 236 QTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDVTFKLP 295
QTRFLL + +W VP++ E + +
Sbjct: 432 QTRFLLN---------------GEEEGRWPVPVNIKKKDG----VERILLEDEASI---- 468
Query: 296 NSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRLYSF 355
+ IK N + +GFYRV YDD + ++ ++ SP DR L+DD F
Sbjct: 469 EADGLIKINADSAGFYRVLYDDATFSDVMG----HYRDLSPLDRIGLVDDLFAFLLSGHI 524
Query: 356 STEDNLNL 363
E
Sbjct: 525 DPETYRQR 532
Score = 183 bits (466), Expect = 6e-49
Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 20/222 (9%)
Query: 354 SFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFS 413
+ +D + L + IK N + +GFYRV YDD + ++ ++ S
Sbjct: 450 NIKKKDGVERILLEDEASIEAD-GLIKINADSAGFYRVLYDDATFSDVMG----HYRDLS 504
Query: 414 PADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLSEASP 473
P DR L+DD F +G ++ + ++D+ + ++
Sbjct: 505 PLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHA--- 561
Query: 474 YRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWM 533
F+ + + + + L R L ++ +E F +
Sbjct: 562 ---FDDDARAFCRSRMQFLTGKQDENLKIALGRVSRLYVM---VDESYAEEMSKLFKDFD 615
Query: 534 EKGFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSE 575
P +R + A G + + K+ S +
Sbjct: 616 S----AEPEMRSSIATAYALVTG--DLKGLLEKFRSVDRDED 651
Score = 178 bits (453), Expect = 3e-47
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 577 YLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTDDVGFYMGTGL 636
+ TTHFE T AR FPC D P +KA F +++ D+ + ++ NMP +
Sbjct: 94 GMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEVSERK----- 148
Query: 637 LRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKFALNTSTHMMD 696
+FQ++ MSTYL+ + ++ + + + ++K+ L+ + ++
Sbjct: 149 -VVEFQDTPRMSTYLLYVGIGKFRYEYEKYR---DIDLILASLKDIRSKYPLDMARKSVE 204
Query: 697 FYEEFFGVPYPLPKQ 711
FYE +FG+PY LPK
Sbjct: 205 FYENYFGIPYALPKM 219
Score = 36.6 bits (85), Expect = 0.032
Identities = 2/28 (7%), Positives = 10/28 (35%)
Query: 20 KKTNYTLILRYYTRLNQDMEGFYLSSYT 47
+ + + +++ + G Y +
Sbjct: 65 DSQPQKIEISFAGKVSDSLSGIYYAGRE 92
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 220 bits (563), Expect = 3e-65
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 10/231 (4%)
Query: 353 YSFSTEDNLNLFL---SPVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNH 409
+ S D ++ FL LP ++WIK NV +G+Y V Y+D WD+L LK H
Sbjct: 41 FITSKSDMVHRFLLKTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTH 100
Query: 410 EVFSPADRASLIDDAFTLSRAGLVNATVPLELSTYLLKEKDYVPWATALEHFQHWSTSLS 469
S DRASLI++AF L G ++ L+LS YL E + +P L +
Sbjct: 101 TAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLME 160
Query: 470 EASP---YRLFEQYVKKLLTPISHHIGWEDTGSHLEKLMRSDILAAAVLVGVDTVVKESK 526
+ F+ ++ +LL + W D GS E+++RS +L A + V+ ++
Sbjct: 161 KRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAE 220
Query: 527 SKFNGWME--KGFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRVPSE 575
F W E +P ++ V+ + + W ++KY + +E
Sbjct: 221 GYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTE 269
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 214 bits (547), Expect = 7e-61
Identities = 46/276 (16%), Positives = 87/276 (31%), Gaps = 36/276 (13%)
Query: 56 QWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTS 115
W GNLVT WN WL+EG+ +LE + + ++ + +D++
Sbjct: 306 SWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSIDSMKDP 365
Query: 116 HPISV---TVHDPVEIEAIFDTISYSKGAAILYMLEKFLG-QGTLRAGLNDYLNTHKYGN 171
S ++D + + F T+ Y KG +L+ LE LG + + Y +
Sbjct: 366 ERFSTLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKS 425
Query: 172 AETKDFWSVLSKHS--NHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPM 229
+T F L + I +TW + G P ++ +
Sbjct: 426 LDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP-----RPHFITALADNV------ 474
Query: 230 IEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNM-- 287
Y + D + + + Q ++++
Sbjct: 475 --YQLADKWVEMAQHLKTTED-------------FRSEFNAIDIKDFNSNQLVLFLETLT 519
Query: 288 -TDVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDA 322
+ K P W K V + Y D++ +
Sbjct: 520 QNGHSNKKPKDFDWAKFPVASRALLDI-YQDNIVKS 554
Score = 143 bits (362), Expect = 4e-36
Identities = 30/145 (20%), Positives = 44/145 (30%), Gaps = 12/145 (8%)
Query: 567 YNSTRVPSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPITSTD 626
NS + + E +ARS FPCFD P K+ F SI + + I T
Sbjct: 130 LNSKQTKGGKPYVFSQLEAIHARSLFPCFDTPSVKSTFTASI-ESPLPVVFSGIRIEDTS 188
Query: 627 DVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQAKF 686
F++ V + YL+ D + G +VY P L ++
Sbjct: 189 K-------DTNIYRFEQKVPIPAYLIGIASGDLSSAPI----GPRSTVYTEPFRLKDCQW 237
Query: 687 ALNTSTHMMDFYEEFFGVPYPLPKQ 711
E Y
Sbjct: 238 EFENDVEKFIQTAEKIIFEYEWGTY 262
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 208 bits (532), Expect = 8e-59
Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 25/217 (11%)
Query: 56 QWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTS 115
W GNLVT + W+ WL+EG +LE + + + + + +
Sbjct: 306 SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGET 365
Query: 116 HPISVTVHDPVEIEA--IFDTISYSKGAAILYMLEKFL-GQGTLRAGLNDYLNTHKYGNA 172
HP + V D +I+ + ++ Y KG A+L+ LE+ L G L Y+ Y +
Sbjct: 366 HPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSI 425
Query: 173 ETKDFWSVLSKHSNHSIN--VKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMI 230
T D+ L + ++ + + W G P I P + +
Sbjct: 426 TTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPP-----IKPNYDMTLTNA------- 473
Query: 231 EYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVP 267
+ +Q + + D K
Sbjct: 474 CIALSQRWITAKEDDLN--------SFNATDLKDLSS 502
Score = 143 bits (361), Expect = 5e-36
Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 8/149 (5%)
Query: 563 CWAKYNSTRVPSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPI 622
W T E + + + R+ PC D P K + + + ++L +
Sbjct: 122 QWLTPEQT-SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIR 180
Query: 623 TSTDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLP 682
+ + F + V + YL+A VV ++ G V++ + +
Sbjct: 181 DGETPDPEDPSRKIYK--FIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVE 234
Query: 683 QAKFALNTSTHMMDFYEEFFGVPYPLPKQ 711
++ + + + M+ E+ G PY +
Sbjct: 235 KSAYEFSETESMLKIAEDLGG-PYVWGQY 262
Score = 39.0 bits (91), Expect = 0.006
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 7 GQQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKKYQWF 58
G + I L K + + + + + GK+ F
Sbjct: 89 GSPMEISLPIALSKNQEIVIEISF--ETSPKSSALQWLTPEQTSGKEHPYLF 138
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 205 bits (522), Expect = 2e-57
Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 18/222 (8%)
Query: 56 QWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFIL---DKTQQALGLDAL 112
W GNLVT W DLWL+EGF S++E ++ V + + L D + L LDA
Sbjct: 305 SWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNAEILELDAS 364
Query: 113 STSHPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNA 172
T I + DP + F + Y KG L LE+ G+ A + +Y ++H + +
Sbjct: 365 DTQLYIDLKGRDPDD---AFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSL 421
Query: 173 ETKDFWSVLSKHSNH---SINVKAIMDTWSRQMGFPVIRISRITP---------QHSSNS 220
T +F L + +I ++ W + G P +
Sbjct: 422 GTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPTSNAFKVIDKQINQLVTD 481
Query: 221 STTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDY 262
T P +++ + + N P + +++ +D
Sbjct: 482 ELTLEQLPTAQWTLHEWLHFINNLPVDLDHQRMVNLDKAFDL 523
Score = 136 bits (345), Expect = 7e-34
Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 13/148 (8%)
Query: 564 WAKYNSTRVPSEPYLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRDRFHISLFNMPIT 623
W T E + + +ARS P D P + + I D+ +++ +
Sbjct: 127 WLSAEQT-AGKEKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNE 185
Query: 624 STDDVGFYMGTGLLRDDFQESVEMSTYLVAFVVCDYQAITDVTAKGVSVSVYAPPDLLPQ 683
+ F + YL+A V D + +YA +L
Sbjct: 186 PGTE-------RDGDYFFSMPQAIPPYLIAIGVGDLEFKAM----SHQTGIYAESYILDA 234
Query: 684 AKFALNTSTHMMDFYEEFFGVPYPLPKQ 711
A + + M+D E+ +G Y +
Sbjct: 235 AVAEFDDTQAMIDKAEQMYG-KYRWGRY 261
Score = 29.8 bits (67), Expect = 3.7
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 8 QQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKKYQWF 58
+ + N + + Y + + G S GK+K F
Sbjct: 95 DVLGSKLTINTPLNA-KKVRVYYNS--TEKATGLQWLSAEQTAGKEKPFLF 142
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 160 bits (405), Expect = 6e-41
Identities = 60/386 (15%), Positives = 111/386 (28%), Gaps = 81/386 (20%)
Query: 56 QWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTS 115
Q+ GN VT+R W L L EG E + + + D+ S
Sbjct: 306 QYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLS 365
Query: 116 HPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAETK 175
HPI + +E + T Y KG+ ++ M LG+ + G + Y+ + A +
Sbjct: 366 HPIRPESYV--SMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCE 423
Query: 176 DFWSVLSKHSNHSINVKAI----MDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIE 231
DF + + + W Q G P + + +
Sbjct: 424 DFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKY---NYDAEKKQ--------- 471
Query: 232 YSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSY--YTDQTGYKEQEIVWMNMTD 289
YS ++ + ++P+S + G + + +T
Sbjct: 472 YSIHVNQYTKPD------------ENQKEKKPLFIPISVGLINPENGKEMISQTTLELTK 519
Query: 290 VTFKLPNSIKWIKANVNQ-------SGFYRVTYDDHLWDALIQALKTNHEVFSPADRASL 342
S ++ N+ GF Y + + +R L
Sbjct: 520 ------ESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQL--------------TDEERILL 559
Query: 343 I---DDAF----TLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFYRVTYDD 395
+ DAF + + +Y N N FL KL + +
Sbjct: 560 LKYDSDAFVRYNSCTNIYMKQILMNYNEFLKAKNEKLESFQLT-------------PVNA 606
Query: 396 HLWDALIQALKTNHEVFSPADRASLI 421
DA+ L ++ ++
Sbjct: 607 QFIDAIKYLL--EDPHADAGFKSYIV 630
Score = 137 bits (346), Expect = 1e-33
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 577 YLATTHFEPTYARSAFPCFDEPQFKARFKMSIFRD--RFHISLFNMPITSTDDVGFYMGT 634
+ + E T R D P A++ +++ D ++ + L N + ++
Sbjct: 117 NIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEI----PG 172
Query: 635 GLLRDDFQESVEMSTYLVAFVVCDYQAITD-----VTAKGVSVSVYAPPDLLPQAKFALN 689
G F + YL A V D + ++ T K V + V++ + + ++AL
Sbjct: 173 GRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALE 232
Query: 690 TSTHMMDFYEEFFGVPYPLPK 710
M F E++FG+ Y L +
Sbjct: 233 CLKKSMAFDEDYFGLEYDLSR 253
Score = 33.3 bits (76), Expect = 0.36
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 8 QQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSY 46
+ + I K + K ++ + + N + G Y S
Sbjct: 79 EFLTIFSKFVPKSKFAFSSEVIIHPETNYALTGLYKSKN 117
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 150 bits (380), Expect = 6e-38
Identities = 45/269 (16%), Positives = 77/269 (28%), Gaps = 24/269 (8%)
Query: 56 QWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTS 115
W GN VT R W L L EG F + + I Q DA T+
Sbjct: 298 NWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLRQHQFPEDAGPTA 357
Query: 116 HPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAETK 175
HP+ E+ + Y KGA ++ M LG+ + G+ Y H
Sbjct: 358 HPV--RPASYEEMNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQAVTCD 415
Query: 176 DFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSAT 235
DF + ++ + ++ W Q G PV+ + + T
Sbjct: 416 DFRAAMADANGINL---DQFALWYSQAGTPVLEAEGRLKNNI--------------FELT 458
Query: 236 QTRFLLTNEPYGRNDSKLLLP---RSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDVTF 292
+ + P + +++P V Y + + ++
Sbjct: 459 VKQTVPPT-PDMTDKQPMMIPVKVGLLNRNGEAVAFD-YQGKRATEAVLLLTEAEQTFLL 516
Query: 293 KLPNSIKWIKANVNQSGFYRVTYDDHLWD 321
+ S + Y D
Sbjct: 517 EGVTEAVVPSLLRGFSAPVHLNYPYSDDD 545
Score = 127 bits (320), Expect = 2e-30
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 10/141 (7%)
Query: 576 PYLATTHFEPTYARSAFPCFDEPQFKARFKMSIF--RDRFHISLFNMPITSTDDVGFYMG 633
T EP R D P ++F +I + R+ + L N +
Sbjct: 109 GGNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGGEFS---- 164
Query: 634 TGLLRDDFQESVEMSTYLVAFVVCDYQAITD----VTAKGVSVSVYAPPDLLPQAKFALN 689
G +++ +YL A V D D ++ + V + Y P+ FA+
Sbjct: 165 DGRHWVKWEDPFSKPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVE 224
Query: 690 TSTHMMDFYEEFFGVPYPLPK 710
+ + M + E FG+ Y L
Sbjct: 225 SLKNAMKWDETRFGLEYDLDI 245
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 138 bits (349), Expect = 4e-34
Identities = 55/320 (17%), Positives = 91/320 (28%), Gaps = 42/320 (13%)
Query: 56 QWFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTS 115
W GN VT R W L L EG F + + + DA +
Sbjct: 323 NWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMA 382
Query: 116 HPISVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQGTLRAGLNDYLNTHKYGNAETK 175
HPI +E+ + Y KGA ++ M+ LG+ + G+ Y H A
Sbjct: 383 HPIRP--DMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCD 440
Query: 176 DFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSAT 235
DF + SN + + W Q G P++ + +Y+
Sbjct: 441 DFVQAMEDASNVDL---SHFRRWYSQSGTPIVTVKD-------------------DYNPE 478
Query: 236 QTRFLLTNE----PYGRNDSKLLLPRSPYDYKWYVPLSYYTDQT----GYKEQEIVWMNM 287
++ LT K P + + L + +N+
Sbjct: 479 TEQYTLTISQRTPATPDQAEKQ-----PLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNV 533
Query: 288 TD----VTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLI 343
T F S ++ Y L ++ FS D A +
Sbjct: 534 TQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSD-QQLTFLMRHARNDFSRWDAAQSL 592
Query: 344 DDAFTLSRLYSFSTEDNLNL 363
+ + L+L
Sbjct: 593 LATYIKLNVARHQQGQPLSL 612
Score = 123 bits (311), Expect = 2e-29
Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 10/141 (7%)
Query: 576 PYLATTHFEPTYARSAFPCFDEPQFKARFKMSIF--RDRFHISLFNMPITSTDDVGFYMG 633
T E R D P ARF I + ++ L N + ++
Sbjct: 134 GDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELE---- 189
Query: 634 TGLLRDDFQESVEMSTYLVAFVVCDYQAITD--VTAKG--VSVSVYAPPDLLPQAKFALN 689
G +Q+ YL A V D+ + D T G V++ +Y L +A +A+
Sbjct: 190 NGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMT 249
Query: 690 TSTHMMDFYEEFFGVPYPLPK 710
+ + M + EE FG+ Y L
Sbjct: 250 SLKNSMKWDEERFGLEYDLDI 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 2e-05
Identities = 104/671 (15%), Positives = 191/671 (28%), Gaps = 225/671 (33%)
Query: 5 SAGQQVYIEFKENLRKKTNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKKYQWFGNLVTM 64
S +++ +F E + + NY ++ + RD
Sbjct: 73 SKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRD-------------- 117
Query: 65 RWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTSHPISVTVHD 124
R +ND ++ FA Y V + P K +QAL L +V +
Sbjct: 118 RLYND---NQVFAK----YNVSRLQP---------YLKLRQAL----LELRPAKNVLID- 156
Query: 125 PVEIEAIFDTISYSKGAAILYMLEKFLGQG--TLRA-GLNDYLNTHKYGNAETKDFW-SV 180
G +L G G + Y K K FW ++
Sbjct: 157 ---------------G-----VL----GSGKTWVALDVCLSYKVQCKMDF---KIFWLNL 189
Query: 181 LSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFL 240
+ +S ++ ++ + + I P +S S + I + R L
Sbjct: 190 KNCNSPETV-LEMLQKLLYQ-----------IDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 241 LTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKW 300
L ++PY + L+L + V + K
Sbjct: 238 LKSKPY--ENCLLVL-----L-----------N---------VQ------------NAKA 258
Query: 301 IKANVNQSGFYRV---TYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRLYSFST 357
A ++ T + D L A T H SL + +
Sbjct: 259 WNAFNLSC---KILLTTRFKQVTDFL-SAATTTHI--------SLDH------HSMTLTP 300
Query: 358 EDNLNLFLSPV---TFKLPNS--------IKWIKANVNQSGFYRVTYDDHL-WDALIQAL 405
++ +L L + LP + I ++ + G H+ D L +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTII 359
Query: 406 KTNHEVFSPADRASLIDDAF-----------TLSR--AGLVNATVPL---ELSTYLLKEK 449
+++ V PA+ + D LS ++ + V + +L Y L EK
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 450 DYVPWATALEHFQHWSTSLSEASPY----RLFEQY--VKKL----LTP------ISHHIG 493
++ + + + Y + + Y K L P HIG
Sbjct: 420 QPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 494 WEDTGSHLEKLMRSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIK 553
HL+ + + + +V +D F ++E+ R +
Sbjct: 479 H-----HLKNIEHPERMTLFRMVFLD---------FR-FLEQKIR----------HDSTA 513
Query: 554 YGGVKEWQNCWA---KYNSTRVPSEPYLATTHFEPTYAR--SAFPCFDEPQFKARFKMSI 608
+ N Y +PY+ P Y R +A F P+ + S
Sbjct: 514 WNASGSILNTLQQLKFY-------KPYICDND--PKYERLVNAILDF-LPKIEENLICSK 563
Query: 609 FRDRFHISLFN 619
+ D I+L
Sbjct: 564 YTDLLRIALMA 574
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 4e-04
Identities = 77/556 (13%), Positives = 134/556 (24%), Gaps = 217/556 (39%)
Query: 290 VTFKLPNSIKWIKANVNQSGFYR--------VTYDD------HLW-------DALIQALK 328
+P + + A+ Q F + DD L +L++ K
Sbjct: 18 HVLLVPTAS-FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 329 TNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLF----LSPVTFKLPNSIKWIKANVN 384
F L F + ++++ L L + + IK
Sbjct: 77 VGQ--FDQVLNLCL--TEFE----NCYLEGNDIHALAAKLLQENDTTLVKTKELIKN--- 125
Query: 385 QSGFYRVTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLV-------NATV 437
+ A F ++L A LV N
Sbjct: 126 ---YI-------------TARIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQGNTDD 168
Query: 438 PL-EL-STYLLKEKDYVPWATAL-----EHFQHWSTSLSEASPYRLFEQY--VKKLLT-- 486
EL Y + Y L E + +A F Q + + L
Sbjct: 169 YFEELRDLY----QTYHVLVGDLIKFSAETLSELIRTTLDAEKV--FTQGLNILEWLENP 222
Query: 487 ------------PIS----------HHI------GWEDTGSHLEKLMRS------DILAA 512
PIS H++ G+ T L ++ ++ A
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF--TPGELRSYLKGATGHSQGLVTA 280
Query: 513 AVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREVVYYAGIKYGGVKEWQNCWAKYNSTRV 572
+ D+ W E F V+++ G++ C+ Y +T +
Sbjct: 281 VAIAETDS-----------W-ESFFVSVRKAITVLFFIGVR---------CYEAYPNTSL 319
Query: 573 PSEP---YLATTHFEPTYARSAFPCFDEPQFK-----ARFKMSIFRDR-FHISLFNMP-- 621
P L P+ S + Q + + + + ISL N
Sbjct: 320 PPSILEDSLENNEGVPSPMLS---ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 622 --ITSTDDVGF----YMGTGL---LR------DDFQESVEMSTYLVAFVV---------- 656
++ G Y GL LR Q + S + F
Sbjct: 377 LVVS-----GPPQSLY---GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 657 CDY------QAITDVTAKGVSVS-------VYA--------------PPDLLPQA----- 684
D+ VS + VY ++
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 685 ---KFALNTSTHMMDF 697
+TH++DF
Sbjct: 489 KWETTTQFKATHILDF 504
Score = 40.0 bits (93), Expect = 0.003
Identities = 49/263 (18%), Positives = 82/263 (31%), Gaps = 83/263 (31%)
Query: 332 EVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSGFY-R 390
+V+ +RA D Y FS D + P ++ + G R
Sbjct: 1644 DVW---NRA----DNHFKDT-YGFSILD--------IVINNPVNLTIH--FGGEKGKRIR 1685
Query: 391 VTYDDHLWDALIQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATV---P----LELST 443
Y +++ ++ ++F + F S GL++AT P +E +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINE-HSTSYTFR-SEKGLLSATQFTQPALTLMEKAA 1743
Query: 444 Y-LLKEKDYVPWATALE-HFQHWSTSLSE--ASPYRLFEQYVKKLLTPISHHIGWEDT-- 497
+ LK K +P H SL E A L ++ + E
Sbjct: 1744 FEDLKSKGLIPADATFAGH------SLGEYAA-------------LASLADVMSIESLVE 1784
Query: 498 -----GSHLEKLM------RSDILAAAVLVGVDTVVKESKSKFNGWMEKGFRIPPNLREV 546
G ++ + RS+ A+ G V F+ E L+ V
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPG--RVAA----SFS--QEA-------LQYV 1829
Query: 547 VYYAGIKYGGVKEWQNCWAKYNS 569
V G + G + E N YN
Sbjct: 1830 VERVGKRTGWLVEIVN----YNV 1848
Score = 38.1 bits (88), Expect = 0.011
Identities = 68/402 (16%), Positives = 114/402 (28%), Gaps = 173/402 (43%)
Query: 7 GQ---QVYIEFKENLRK--KTNYT-----LILRYYTRLNQDMEGFYLSSYTTRDGKKKYQ 56
GQ Y F+E LR +T Y LI L++ L TT D +K +
Sbjct: 162 GQGNTDDY--FEE-LRDLYQT-YHVLVGDLIKFSAETLSE------LIR-TTLDAEKVF- 209
Query: 57 WFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMMDQFILDKTQQALGLDALSTSH 116
++G +++ W L+ D L +
Sbjct: 210 ----------------TQGL----------NIL-EW-------LENPSNTPDKDYLLSI- 234
Query: 117 PIS-------------VTVH----DPVEIEAIFDTIS-YSKG---AAILYM---LEKFLG 152
PIS VT P E+ + + +S+G A + E F
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-- 292
Query: 153 QGTLRAGLNDYLNTHKYGNAETKDFWSVLSKH---SNHSINVKAIMDTWSRQMGFP---- 205
+++ K A T F+ + + N S+ + D+ G P
Sbjct: 293 ----------FVSVRK---AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 206 -VIRISR------IT------PQHSS------NSSTT------P--------------AP 226
+ +++ + P N + P AP
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 227 PPM----IEYS----ATQTRFLLTNEPYGRNDSKLLLPRSP--------YDYKWY----- 265
+ I +S RFL P+ S LL+P S + +
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPF---HSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 266 VPLSYYTDQTGY---KEQEIVWMNMTDVTFKLPNSIKWIKAN 304
+P+ Y T G + + D +LP +KW
Sbjct: 457 IPV-YDTF-DGSDLRVLSGSISERIVDCIIRLP--VKWETTT 494
Score = 37.3 bits (86), Expect = 0.020
Identities = 86/528 (16%), Positives = 161/528 (30%), Gaps = 185/528 (35%)
Query: 74 EGFASFLEYYGVDHVMPGWNMMDQF--ILDKTQQALGLDALSTS--HPI--SVTVHDPVE 127
E FL Y V ++ + + QF +L+ L + H + + +
Sbjct: 59 ELVGKFLGY--VSSLVE-PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 128 IEAIFDTI-SY-----------------------SKGAAILYMLEKFLGQGTLRAGLNDY 163
+ + I +Y +G A L + F GQG +DY
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--FGGQGN----TDDY 169
Query: 164 L----NTHKYGNAETKDFWS----VLSKHSNHSINVKAIMDTWSRQMGFPVIR-ISRITP 214
+ ++ + D LS+ +++ + + G ++ +
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-----FTQGLNILEWL----- 219
Query: 215 QHSSNSSTTPAPP---------PMIEYSATQ-TRFLLTNEPYGRNDSKLLLPRSPYDYKW 264
N S TP P+I Q +++T + G +L
Sbjct: 220 ---ENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGEL----------- 263
Query: 265 YVPLSYYTDQTGYKEQEIV----------WMNMTDVTFKLPNSIK------WIKANVNQS 308
SY TG+ Q +V W + + K +I ++
Sbjct: 264 ---RSYLKGATGHS-QGLVTAVAIAETDSWESFFV------SVRKAITVLFFIGVRCYEA 313
Query: 309 GFYRVTYDDHLWDALIQ-ALKTNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFL-S 366
Y T L ++++ +L+ N V SP S+ + T ++ + + N +L
Sbjct: 314 --YPNTS---LPPSILEDSLENNEGVPSPM--LSISN--LTQEQVQDYVNKTNSHLPAGK 364
Query: 367 PVTFKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQALKTNHEVFSPAD---------- 416
V L N K N+ SG + Y L L + +P+
Sbjct: 365 QVEISLVNGAK----NLVVSGPPQSLY------GLNLTL---RKAKAPSGLDQSRIPFSE 411
Query: 417 RASLIDDAFTLSRAGLVNATVP-----LELSTYLLKE---KDYVPW-ATAL--------- 458
R + F L P L ++ L+ + K+ V + A +
Sbjct: 412 RKLKFSNRF------LP-VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 459 -EHFQHWSTSLSEASPYRLFEQYVKKLLTPISHHIGWEDT----GSHL 501
+ S S+SE R+ + I + WE T +H+
Sbjct: 465 GSDLRVLSGSISE----RIVDCI-------IRLPVKWETTTQFKATHI 501
Score = 36.6 bits (84), Expect = 0.035
Identities = 47/293 (16%), Positives = 92/293 (31%), Gaps = 89/293 (30%)
Query: 270 YYTDQTGYKEQEIVWMNMTDVT--FKLPNSIKWIKANVNQSGFYRVTYDDHLWDALIQAL 327
++ D G+ +IV N ++T F K I+ N Y +++ ++
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKG-KRIREN----------YSAMIFETIVDGK 1700
Query: 328 KTNHEVFSPADRASLIDDAFTLSRLYSFSTEDNLNLFLSPVTFKLPNSIKWIKANVNQSG 387
++F + S Y+F +E L L + T Q
Sbjct: 1701 LKTEKIFKEINEH---------STSYTFRSEKGL-LSATQFT---------------QPA 1735
Query: 388 FYRVTYDDHLWDALIQALKTNHEVFSPADRA--SL--------------IDDAFTL--SR 429
+ A + LK+ + + A A SL I+ + R
Sbjct: 1736 LTLMEK------AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 430 AGLVNATVP---LELSTYLLKEKDYVPWATAL----EHFQHWSTSLSEASPYRL----F- 477
+ VP L S Y + + P A E Q+ + + + + + +
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAIN--PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 478 ---EQYVKKLLTPIS-HHIGWEDTGSHLE--KLMRSDILAAAVLVGVDTVVKE 524
+QYV + + + L KL + DI+ + ++ V+
Sbjct: 1848 VENQQYV------AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE-VEG 1893
Score = 35.0 bits (80), Expect = 0.11
Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 45/156 (28%)
Query: 92 WNMMDQFILDKTQQALGLDAL--STSHPISVTVHDPVE----IEAIFDTISYSKGAAILY 145
WN D + G L ++P+++T+H E I + + +
Sbjct: 1646 WNRADNH----FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 146 MLEKFLGQGTLRAGLNDYLNTHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFP 205
EK + +N++ ++ + + + +LS A+ + F
Sbjct: 1702 KTEKIFKE------INEHSTSYTFRSEK-----GLLSATQFTQP---ALT-LMEKAA-FE 1745
Query: 206 VIRISRITPQ------HSSNSSTTPAPPPMI-EYSA 234
++ + P HS + EY+A
Sbjct: 1746 DLKSKGLIPADATFAGHS------------LGEYAA 1769
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.016
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 660 QAITDVTAKGVSVSVYAPPDLLPQAKFALNTS 691
QA+ + A S+ +YA D P A A+ +
Sbjct: 20 QALKKLQA---SLKLYA-DDSAP-A-LAIKAT 45
Score = 31.8 bits (71), Expect = 0.40
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 402 IQALKTNHEVFSPADRASLIDDAFTLSRAGLVNATV 437
++ L+ + ++++ D A L+ + AT+
Sbjct: 22 LKKLQASLKLYAD-------DSAPALA----IKATM 46
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 32.9 bits (74), Expect = 0.43
Identities = 18/161 (11%), Positives = 36/161 (22%), Gaps = 13/161 (8%)
Query: 157 RAGLNDYLNTHKYGNAE--TKDFWSVLSKHSNHSINV--KAIMDTWSRQMGFPVIRISRI 212
+A ++ N H Y N V K + + + I
Sbjct: 400 KAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVI 459
Query: 213 TPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYV------ 266
+ + I+ + N+ P
Sbjct: 460 PMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGL 519
Query: 267 ---PLSYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKAN 304
+ Y YK ++ ++PNS+ W+
Sbjct: 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRF 560
>4dv8_A Lethal factor; endopeptidase, zinc dependent, hydrolase; HET: 0LX;
1.63A {Bacillus anthracis} PDB: 1yqy_A* 2l0r_A
Length = 526
Score = 30.6 bits (68), Expect = 1.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 451 YVPWATALEHFQHWSTSLSEASPYRLFEQYVKKLLTPI 488
Y W +H+QHWS SLSE +KKL PI
Sbjct: 18 YEKWEKIKQHYQHWSDSLSEEG-----RGLLKKLQIPI 50
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 29.6 bits (67), Expect = 4.5
Identities = 9/66 (13%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 258 SPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDVTFKLPNSIKWIKANV----NQSGFYRV 313
+P ++ +++ D +G + I + ++D + + + + + + + + V
Sbjct: 182 APPEHDL---VAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYV 238
Query: 314 TYDDHL 319
T D+ L
Sbjct: 239 TKDETL 244
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 28.7 bits (65), Expect = 7.4
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 119 SVTVHDPVEIEAIFDTISYSKGAAILYMLEKFLGQG 154
+ DP +E +K L + G+G
Sbjct: 43 LALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRG 78
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl
transferase, editosome, transferase/RNA binding protein
complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4
d.218.1.10 PDB: 2b51_A* 2b56_A*
Length = 468
Score = 28.7 bits (63), Expect = 8.4
Identities = 6/66 (9%), Positives = 16/66 (24%), Gaps = 1/66 (1%)
Query: 22 TNYTLILRYYTRLNQDMEGFYLSSYTTRDGKKKYQWFGNLVTMRWWNDLWLSEGFASFLE 81
T+Y + + + L + + + + + L F
Sbjct: 298 TSYAVTVMFIYYL-LVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFI 356
Query: 82 YYGVDH 87
+Y
Sbjct: 357 FYAHHF 362
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 28.4 bits (62), Expect = 9.1
Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 24/153 (15%)
Query: 57 WFGNLVTMRWWNDLWLSEGFASFLEYYGVDHVMPGWNMM---DQFILDKTQQALGLDALS 113
L + LW EG S+ D + + + +++ ++ +
Sbjct: 290 LPYQLEKESYTEQLWFYEGMTSYF-----DDYLLHTSGIIDEKRYLKLLGDTLSRVERGA 344
Query: 114 ---------TSHPISVTVHDPVEIEAIFDTISYSKGAAILYML-----EKFLGQGTLRAG 159
+S + E Y+KGA I L + + TL
Sbjct: 345 GQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGALIALSLDLMLRLQSDHKLTLARV 404
Query: 160 LNDYLNTHKYGNA--ETKDFWSVLSKHSNHSIN 190
+ + + + + L+++ I+
Sbjct: 405 MKELWHEFGKTSIGTADDTVINWLNQYPGIDIS 437
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.416
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,211,031
Number of extensions: 675621
Number of successful extensions: 1589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1518
Number of HSP's successfully gapped: 49
Length of query: 711
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 611
Effective length of database: 3,909,693
Effective search space: 2388822423
Effective search space used: 2388822423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)